BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480758
Length=1163
Score E
Sequences producing significant alignments: (Bits) Value
AT2G18500.1 | Symbols: ATOFP7, OFP7 | ovate family protein 7 | ... 1533 0.0
> AT2G18500.1 | Symbols: ATOFP7, OFP7 | ovate family protein 7
| chr2:8027034-8028251 FORWARD LENGTH=1218
Length=1218
Score = 1533 bits (830), Expect = 0.0
Identities = 1080/1193 (91%), Gaps = 48/1193 (4%)
Strand=Plus/Plus
Query 13 CTCCACACaaaacaaaaaaaaacaagaaaag--aaaaaaatgacaaaaCGTTTCAAATTA 70
||||| ||||||| | ||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 32 CTCCA-ACAAAAC-ACAAAAAACAAGAAAAGAAAAAAAAATGACGAAACGTTTCAAATTA 89
Query 71 AAGATTTCAAGAATCCTCTCATTCAAATCTTGCCGTTCAAAAGATCCTTCTTCTCTTCCT 130
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 90 AAGATTTCAAGAATCCTCTCATTCAAATCTTGCCGTTTAAAAGATCCTTCTTCTCTTCCT 149
Query 131 TTTAATCCTGTTCCTTCAAGTCTCCGTCGTACTCCTCCACCGGTTAACTCCTCCGCCGTC 190
|||||||||||| ||||||||||||| |||||| |||||| ||||||||||||||||| |
Sbjct 150 TTTAATCCTGTTTCTTCAAGTCTCCGACGTACTTCTCCACTGGTTAACTCCTCCGCCGAC 209
Query 191 GTCACCACCGTGCCAAAACGTCGTCGTTCTTCTTTCAGACTACACGTTTTAACCGTGTTT 250
|||||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 210 GTCACCACCGTGCCGCAACGTCGCCGTTCTTCTTTCAGACTACACGTTTTAACTGTGTTT 269
Query 251 GGCTGCGGACGCTCACCCACGCCGTTGGATGTTGATCTGAGGAATTCGCCGGCGTTATCT 310
|||||||||||||| ||||||||||||||||||||||||| || || |||| |||||||
Sbjct 270 GGCTGCGGACGCTCGTCCACGCCGTTGGATGTTGATCTGAGAAACTCACCGGTGTTATCT 329
Query 311 CCGCCGCTAACGCCGACGTTTCAGTGGGAAAGTGAAGGGAAGTGGCACGTGATTGCTCAA 370
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 330 CCGCCGCAAACGCCGACGTTTCAGTGGGAAAGTGAAGGGAAGTGGCACGTGATTGCTCAA 389
Query 371 GTCACTGAAGAAGAATACGAGACGCCTCGTCGGAAAATATACGACGGTGGATCGGAGAAA 430
|||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||||||
Sbjct 390 GTCACTGAAGAAGAATACGAAACGCCTCGTCGGAAAATATACAACGGTGGGTCGGAGAAA 449
Query 431 GATAATCGCCGGTGTTTAAAGAAGAAGGAGAGATCAACCTCTCGGCGGGGAGGGAGCGTT 490
|||||||||||| |||||||||||||||||| ||||| |||||||||| |||||||| ||
Sbjct 450 GATAATCGCCGGCGTTTAAAGAAGAAGGAGAAATCAAACTCTCGGCGGCGAGGGAGCATT 509
Query 491 TCCTCCGCCGAAGAAGAGACGGATAGAGAGAGTCTCTTACCATCTTCTACAGATCTCTCG 550
|||||||||||||||||||| |||||||||||||||||||||||||||||| | ||||||
Sbjct 510 TCCTCCGCCGAAGAAGAGACTGATAGAGAGAGTCTCTTACCATCTTCTACAAACCTCTCG 569
Query 551 CCGGAATATTCCTCCTCAGAGCTGCCACGTGTTACAAGACGACGGAGAAAACTTCTCAAG 610
|||||||||||||| || ||||| || ||||| |||||||| | |||| |||||||||||
Sbjct 570 CCGGAATATTCCTCTTCCGAGCTACCGCGTGTCACAAGACGTCCGAGACAACTTCTCAAG 629
Query 611 AAAGCAGTGATTGAGGAAGAAAGTGAATCATCATCACCGCCACCGTCTCCGGCTAGACTG 670
|| || ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 630 AAGGCGGTGATCGAGGAAGAAAGTGAATCATCATCACCGCCACCGTCTCCGGCGAGACTG 689
Query 671 TCTTCGTTTGTTCAAAGATTGATGCCGTGTACGACGGCGGCGGCGGTTATGGTGGAAGGA 730
||||||||||| || ||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct 690 TCTTCGTTTGTGCAGAGATTAATGCCGTGTACGATGGCGGCGGCGGTTATGGTGGAAGGA 749
Query 731 GTGGCGGTGGTGAAGAGATCGGAGGATCCATACGAAGATTTCAAAGGATCAATGATGGAG 790
|||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct 750 GTGGCGGTGGTGAAGAAATCGGAGGATCCATACGAAGATTTTAAAGGATCAATGATGGAG 809
Query 791 ATGATAGTAGAGAAGAAGATGTTTGAAGTAGCTGAGCTTGAACAGCTTCTTAGTTGCTTC 850
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 810 ATGATAGTAGAGAAGAAGATGTTTGAAGTAGCTGAGCTTGAACAGCTTCTTAGTTGCTTC 869
Query 851 CTATCGCTAAACGCGAAACGCCACCACCGCGCGATTGTAAGAGCGTTTTCAGAGATATGG 910
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 870 CTATCGCTAAACGCGAAACGCCACCACCGCGCGATTGTAAGAGCGTTTTCAGAGATTTGG 929
Query 911 GTTGCTTTGTTCGCCGGTGGTAATGGTGGTGGTGGTCGGAGGTCGTCTTCCTTCTCGAGT 970
|||||||||||| |||||||| | |||||||||||||||| ||||| ||||||||||||
Sbjct 930 GTTGCTTTGTTCTCCGGTGGT-A--GTGGTGGTGGTCGGAGATCGTCCTCCTTCTCGAGT 986
Query 971 GTTCGA--CT----CT-CG--GA---TTACGAT--GAGTGTTAAAAA-T--AAT--AATG 1011
|||||| || || || || ||| || | ||||||||| | ||| ||
Sbjct 987 GTTCGACTCTCAGACTACGATGAGTGTTAAAATAATAATGTTAAAAATTAAAATCCTCTG 1046
Query 1012 -TTATGATAATGTCTAACTAAA-T-T-CT--A-------GAC-GAT-GT-A--A-ATAAA 1052
||||||||||||||||||||| | | || | || | || | | ||||
Sbjct 1047 TTTATGATAATGTCTAACTAAATTCTACTAAATTTTTTTCACTTTTAGTGACGATGTAAA 1106
Query 1053 TGTT-AATGTAAATTATGCGGCGGTGCAATTATTAAAACTTTAATCATTTATATGCGTAG 1111
|||| ||||||||||||||||||||||||||||||||||| |||||| ||| ||||||||
Sbjct 1107 TGTTAAATGTAAATTATGCGGCGGTGCAATTATTAAAACTGTAATCA-TTAAATGCGTAG 1165
Query 1112 GCTAATTAAAATA-TGTATTTGTACGATTTAGATTCTAATGCATAGATTGCAT 1163
||||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 1166 GCTAATTAAAATATTGTATTTGTGCGATTTAGATTCTAATGCATAGATTGCAT 1218
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57078019665
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5