BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480759
Length=1550
Score E
Sequences producing significant alignments: (Bits) Value
AT2G18510.1 | Symbols: emb2444 | RNA-binding (RRM/RBD/RNP motif... 2423 0.0
AT2G14550.1 | Symbols: | pseudogene, putative pre-mRNA splicin... 147 4e-34
> AT2G18510.1 | Symbols: emb2444 | RNA-binding (RRM/RBD/RNP motifs)
family protein | chr2:8031182-8033619 REVERSE LENGTH=1566
Length=1566
Score = 2423 bits (1312), Expect = 0.0
Identities = 1495/1577 (95%), Gaps = 38/1577 (2%)
Strand=Plus/Plus
Query 1 TAACTTCTAGAAAAATCGCCAGAAGTGACGAAATTGAAAACCTCAGATTTCTC--AATCG 58
|||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct 1 TAACTTCTAGAAAAATCGCCAGAAGTGACGAAATTGAAAATCTCAGATTTCTCTTAATCG 60
Query 59 GCGACGGAGTAACGAAAC----A-AAG-AGAAGAAGAAG---ATGACGACTCGAATCGCT 109
|||||||||||||||||| | ||| ||||||||||| ||||||||||||||||||
Sbjct 61 GCGACGGAGTAACGAAACAAGGAGAAGAAGAAGAAGAAGAAAATGACGACTCGAATCGCT 120
Query 110 CCTGGTGTTGGAGCTAATCTTCTCGGCCAACACTCCGCTGAGAGGAACCAAGACGCCACT 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CCTGGTGTTGGAGCTAATCTTCTCGGCCAACACTCCGCTGAGAGGAACCAAGACGCCACT 180
Query 170 GTTTACGTCGGCAATCTCGATGCTCAGCTTTCTGAAGAATTGCTTTGGGAATTGTTCGTT 229
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GTTTACGTCGGTGGTCTCGATGCTCAGCTTTCTGAAGAATTGCTTTGGGAATTGTTCGTT 240
Query 230 CAAGCTGGTCCTGTTGTTAATGTCTATGTTCCGAAAGATAGAGTGACAAATCTTCATCAG 289
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 241 CAAGCTGGACCTGTTGTTAATGTCTATGTACCGAAAGATAGAGTGACAAATCTTCATCAG 300
Query 290 AACTATGGATTCATTGAATATCGTAGTGAGGAAGATGCTGATTATGCGATTAAGGTTCTC 349
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AACTATGGATTCATTGAATATCGTAGTGAGGAAGATGCTGATTATGCGATTAAGGTTCTT 360
Query 350 AACATGATTAAGGTACATGGGAAGCCTATACGTGTTAACAAGGCATCTCAAGATAAGAAA 409
|||||||||||| | || |||||||||||||||||||||||||||||||||||||||||
Sbjct 361 AACATGATTAAGCTCCACGGGAAGCCTATACGTGTTAACAAGGCATCTCAAGATAAGAAG 420
Query 410 AGCTTGGATGTTGGTGCTAACCTTTTCATTGGGAACCTTGACCCTGATGTGGATGAGAAG 469
||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 421 AGCCTGGATGTTGGTGCTAACCTTTTCATTGGAAACCTTGACCCTGATGTGGATGAGAAG 480
Query 470 CTCTTGTATGATACTTTCAGTGCATTTGGTGTGATTGCTTCTAATCCTAAGATAATGAGA 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 CTCTTGTATGATACTTTCAGTGCATTTGGTGTGATTGCTTCTAATCCTAAGATAATGAGA 540
Query 530 GATCCCGATACTGGAAACTCACGAGGTTTTGGTTTCATCAGCTATGACTCCTTTGAGGCA 589
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 541 GATCCCGATACTGGAAACTCACGAGGTTTTGGTTTCATCAGCTATGACTCCTTTGAAGCA 600
Query 590 TCTGATGCGGCTATCGAGGCAATGACTGGACAATATCTCAGTAATCGTCAAATAACAGTC 649
|||||||| ||||| ||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct 601 TCTGATGCTGCTATTGAGTCAATGACTGGACAATATCTCAGTAATCGTCAAATCACAGTC 660
Query 650 TCTTACGCATACAAGAAAGACACCAAAGGAGAGCGCCATGGTACTCCAGCAGAGAGGCTT 709
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 TCTTACGCATACAAGAAAGACACCAAAGGAGAGCGCCATGGTACTCCAGCAGAGAGGCTT 720
Query 710 TTGGCAGCCACAAATCCAGCTGCCCAGAAAAGCAGACCCCATACGCTATTCGCAAGT-GG 768
|||||||||||||||||| |||||||||||||||||||||||||||||||||||| | ||
Sbjct 721 TTGGCAGCCACAAATCCAACTGCCCAGAAAAGCAGACCCCATACGCTATTCGCAA-TGGG 779
Query 769 CCCTCCATCCAATGCTCCTCAAGTTAATGGTCTACCACGTCCGTTTGCTAACGGCAGCAT 828
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 CCCTCCATCCAGTGCTCCTCAAGTTAATGGTCTACCACGTCCGTTTGCTAACGGCAGCAT 839
Query 829 GCAACCTGTCCCGA-TCCCAGCCCCCCGTCAACCACCACCACCACCTCCACAAGTATATC 887
|||||||||||||| |||| || |||||||||||||||||||| ||||||||||||||||
Sbjct 840 GCAACCTGTCCCGATTCCC-GCTCCCCGTCAACCACCACCACCTCCTCCACAAGTATATC 898
Query 888 AAACTCAGCCACCATCCTGGCCATCTCAGCCACAACAACAGGGCTTTGTCCCACCGCCCA 947
|||||||||||||||||||||||||||||||||||||||| || | |||||||| ||||
Sbjct 899 AAACTCAGCCACCATCCTGGCCATCTCAGCCACAACAACACAGCATGGTCCCACCACCCA 958
Query 948 TGCAATTCCGTCCGCCTCAAGGTATGCCTCCGCCACCACCTCCTCAGTTTCTAAATCACC 1007
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 959 TGCAATTCCGTCCACCTCAGGGTATGCCTCCGCCACCACCTCCTCAGTTTCTAAATCACC 1018
Query 1008 AACAAGGTTTCGGTGGTCCGAGGCCGCCGCCACCACCTCAAGCCATGGGAATGCACCAAC 1067
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 AACAAGGTTTCGGTGGTCCGAGGCCGCCGCCACCACCTCAAGCCATGGGAATGCACCAAC 1078
Query 1068 ATGGAGGATGGCCACCGCAACACATGCAGCAGCAAGGTGGaccaccacaacaacaacaac 1127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 ATGGAGGATGGCCACCGCAACACATGCAGCAGCAAGGTGGACCACCACAACAACAACAAC 1138
Query 1128 caccaccataccaacaccatcacatgtctatgcctccaccaccaccacaccaaGGTTGAT 1187
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 CACCA---TACCAACACCATCACATGTCTATGCCTCCACCACCACCACACCAAGGTTGAT 1195
Query 1188 AGTAATCATCTCTTCAGTCTCGAACCAAATCAACTATTTGTAAACCCTTTCTTT-CATGA 1246
| |||||||| | ||||| ||| ||||| |||||||| |||||||||||||||| | ||
Sbjct 1196 AATAATCATCGCCTCAGTTTCGGACCAATTCAACTATATGTAAACCCTTTCTTTAC-TGG 1254
Query 1247 CAAGTAATCACAAGGATTTTGCC-TTTTAGATTCAATGAAACCT--TAGGgagagagaga 1303
||||||||| | |||||||| || |||||||||||||||||||| ||||||||||||||
Sbjct 1255 CAAGTAATCCCGAGGATTTT-CCGTTTTAGATTCAATGAAACCTAATAGGGAGAGAGAGA 1313
Query 1304 gagagagagagaga-----A-A-A-A-A-CACAATTAATATTCCCTATTGTCTTGTCTGC 1353
||||| ||||||| | | | | | |||||||||||||| |||||||||||||||
Sbjct 1314 AAGAGAAAGAGAGAGGGTGAGAGAGAGATCACAATTAATATTCTATATTGTCTTGTCTGC 1373
Query 1354 AGAGAATCTCTTATCTTCGGTTTagagagagagagagagagCGTAGAAATTAGTGCCAAT 1413
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1374 AGAGAATCTCTTATCTTCGGTTTAGAGAGAGAGAGAG----CGTAGAAATTAGTGCCAAT 1429
Query 1414 GTGTGTCTGGTTTTTAGTGATGTTATTTCTTGTTTGTGTTGCAGAATCTCTGATGCCGTG 1473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1430 GTGTGTCTGGTTTTTAGTGATGTTATTTCTTGTTTGTGTTGCAGAATCTCTGATGCCGTG 1489
Query 1474 TGCTTTAATATTTACCAAAACTGTGCTGTAAAATCTCAATAATTTAACTTCTGACCTTTG 1533
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1490 TGCTTTAATATTTACCAAAACTGTGCTGTAAAATCTCAATAATTTTACTTCTGACCTTTG 1549
Query 1534 AGGTTGCTTTTTACTCT 1550
|||||||||||||||||
Sbjct 1550 AGGTTGCTTTTTACTCT 1566
> AT2G14550.1 | Symbols: | pseudogene, putative pre-mRNA splicing
factor, non-consensus splice donor TA at exon 5; blastp
match of 67% identity and 1.1e-68 P-value to GP|28374170|gb|AAH45264.1||BC045264
Similar to splicing factor 3b, subunit
4, 49kD {Xenopus laevis} | chr2:6202988-6204746 FORWARD LENGTH=1759
Length=1759
Score = 147 bits (79), Expect = 4e-34
Identities = 87/91 (96%), Gaps = 0/91 (0%)
Strand=Plus/Plus
Query 606 AGGCAATGACTGGACAATATCTCAGTAATCGTCAAATAACAGTCTCTTACGCATACAAGA 665
|||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||||
Sbjct 1158 AGGCAATGACTGGACAATATCTGAGTAATCGTCAAATAACAGTCACTTATGCATACAAGA 1217
Query 666 AAGACACCAAAGGAGAGCGCCATGGTACTCC 696
|||||||||||||||||||||| ||||||||
Sbjct 1218 AAGACACCAAAGGAGAGCGCCACGGTACTCC 1248
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76505630580
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5