BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480760
Length=1352
Score E
Sequences producing significant alignments: (Bits) Value
AT2G18520.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 1895 0.0
AT4G36680.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 702 0.0
> AT2G18520.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr2:8033882-8035363 REVERSE LENGTH=1482
Length=1482
Score = 1895 bits (1026), Expect = 0.0
Identities = 1186/1262 (94%), Gaps = 16/1262 (1%)
Strand=Plus/Plus
Query 1 ATGACGCCGTCTCATTTCTGTCTCCGCTTCCTCCGCCGCTTCTCCACCG---CC-G-CT- 54
|||||| | |||| ||| |||||| |||||||||||||||||||||| || | |
Sbjct 72 ATGACGTCATCTCGCCTCTATCTCCGTTTCCTCCGCCGCTTCTCCACCGCCACCGGTATA 131
Query 55 G-----C-AACCAATG-TTTCTTCCGGCGCAATCACTATCTCCAAAGCTAAATCCAAACT 107
| | ||||| || || | |||||||||||||||| ||||||||||||||||||||
Sbjct 132 GATTCTCAAACCACTGCTTAC-CCCGGCGCAATCACTATGTCCAAAGCTAAATCCAAACT 190
Query 108 CCGCAAAGTCCACGATCCAGACAAAGCCTTAGCGATTTACAAATCCGTCTCCAACAACTC 167
||||||||| || |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 191 CCGCAAAGTACAAGATCCAGACAAAGCCTTAGCGATTTACAAATCCGTCTCCAACAATTC 250
Query 168 CTCATCTCCACTCTCCTCTCGCTACGCCATGGAGCTCACAGTCCAACGTCTCGCTAAATC 227
| ||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||
Sbjct 251 CACATCTCCACTCTCCTCTCGTTACGCAATGGAGCTTACAGTCCAACGTCTCGCTAAATC 310
Query 228 TCAACGCTTCTCTGACATAGAAGCTCTAATTGAGTCTCACAAAAACAACCCAAAGATCAA 287
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 311 TCAACGCTTCTCCGACATAGAAGCTCTAATTGAGTCTCACAAAAACAACCCAAAGATCAA 370
Query 288 AACAGAGACTTTTCTCTCTACACTTATCAGATCTTATGGACGAGCTTCAATGTTTGATCA 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 AACAGAGACTTTTCTCTCTACACTTATCAGATCTTATGGACGAGCTTCAATGTTTGATCA 430
Query 348 TGCTATGAAGATGTTCGAGGAGATGGATCAGATCGGGACACCAAGAACCGTTGTTTCCTT 407
|||||||||||||||||||||||||||| || | || ||||| |||||||||||||||||
Sbjct 431 TGCTATGAAGATGTTCGAGGAGATGGATAAGCTTGGCACACCCAGAACCGTTGTTTCCTT 490
Query 408 CAATGCCTTACTCGCTGCTTGTCTTCATTCTGATTTGTTTGAAAGAGTCCCCCAACTGTT 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 491 CAATGCCTTACTCGCTGCTTGTCTTCATTCTGATTTGTTTGAAAGAGTCCCCCAACTGTT 550
Query 468 CGACGAAATTCCTCAGAGGTATAATAATATTACTCCTGATAAAGTCTCTTATGGTATGTT 527
||||||| |||||||||||||||||||||| |||||||||||| ||||||| ||||||||
Sbjct 551 CGACGAATTTCCTCAGAGGTATAATAATATCACTCCTGATAAAATCTCTTACGGTATGTT 610
Query 528 GATTAAGTCGTATTGTGACTCTGGTTCGCCTGAAAAAGCTATGGAGATTATGAGAGATAT 587
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 611 GATTAAGTCGTATTGTGACTCTGGTAAGCCTGAAAAAGCTATGGAGATTATGAGAGATAT 670
Query 588 GGAGGTTAAAGGTGTGGAAGTTACTATCATTGCTTTCACTACCATTTTAGGATCTTTGTA 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 671 GGAGGTTAAAGGTGTGGAAGTTACTATCATTGCTTTCACTACCATTTTAGGATCTTTGTA 730
Query 648 CAAGAATGGTTTAGTCGATGTAGCGGAAAGCTTGTGGACCGAGATGGTGAATAAAGGCTG 707
||||||||||||||||||| |||||| |||||||||| ||||||||||| ||||| ||
Sbjct 731 TAAGAATGGTTTAGTCGATGAAGCGGAGAGCTTGTGGATTGAGATGGTGAACAAAGGTTG 790
Query 708 TGAATTGGATAACACTGTTTATAATGTTAGACTTATGAATGCTGCGAAGGAAAGTCCCGA 767
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 791 TGACTTGGATAACACAGTTTATAATGTTAGACTTATGAATGCTGCGAAGGAAAGTCCCGA 850
Query 768 AAGAGTTGGGGAATTGATGGAAGAAATGAGTAGTGTAGGATTGAAACCTGATACGGTTAG 827
|||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 851 GAGAGTTAAGGAATTGATGGAAGAAATGAGTAGTGTAGGATTGAAACCTGATACTGTTAG 910
Query 828 CTATAACTATCTTATGACTGCGTACTGCGTGAAAGGAATGATGGGTGAAGCCAAGAAAGT 887
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 911 CTATAACTATCTTATGACTGCGTACTGCGTGAAAGGAATGATGAGTGAAGCCAAGAAAGT 970
Query 888 GTATGAAGGGCTTGAGCAACCAAACGCAGCGACGTTCAGGACATTGATATTTCATCTGTG 947
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 971 GTATGAAGGGCTTGAGCAACCAAACGCAGCGACGTTCAGGACATTGATATTTCATCTGTG 1030
Query 948 TATAAATGGGTTGTATGATCAAGGTTTAACGGTGTTTAAGAAGAGTGCGATTGTGCACAA 1007
|||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 1031 TATAAACGGGTTGTATGATCAAGGTTTAACGGTGTTTAAGAAGAGCGCGATAGTGCACAA 1090
Query 1008 GATTCCGGATTTCAAAACTTGTAAGCATTTGACTGAAGGGTTGGTGAAAAATAACAGAAT 1067
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 1091 GATTCCGGATTTCAAAACTTGTAAGCATTTGACTGAAGGATTGGTGAAGAATAACAGAAT 1150
Query 1068 GGAAGATGCAAGAGGAGTGGCTAGGA-CTGTGAAGAAGAAATTCCCTCCGCGTTTAGTAA 1126
||||||||||||||||||||| |||| | |||||||||||||||||||||||||| || |
Sbjct 1151 GGAAGATGCAAGAGGAGTGGCCAGGATC-GTGAAGAAGAAATTCCCTCCGCGTTTGGTGA 1209
Query 1127 CCGAGTGGAAGAAACTAGAGGAGAAGCTGGGTTTGTATTCGAAGGCTAATGCAGCTGCTG 1186
||||||||||||||||||||||||||||||| |||||||| |||| ||||||||||||||
Sbjct 1210 CCGAGTGGAAGAAACTAGAGGAGAAGCTGGGATTGTATTCAAAGGGTAATGCAGCTGCTG 1269
Query 1187 TTTCATCTTCTTCTCAAACTAGAGAAGTGTTAGAACAAGAAAGAGAGGATGCTGCATACA 1246
|||||||||||||||||||||||||||||||||| |||||||||||||||| || ||| |
Sbjct 1270 TTTCATCTTCTTCTCAAACTAGAGAAGTGTTAGATCAAGAAAGAGAGGATGATGTATAAA 1329
Query 1247 GC 1248
||
Sbjct 1330 GC 1331
> AT4G36680.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr4:17292229-17293822 REVERSE LENGTH=1594
Length=1594
Score = 702 bits (380), Expect = 0.0
Identities = 903/1145 (79%), Gaps = 78/1145 (7%)
Strand=Plus/Plus
Query 67 TCTTCCGGCGCAATCACTATCTCCAAAGCTAAATCCAAACTCCGCAAAGTCCACGATCCA 126
||||| ||| |||| || ||||||||||||| |||| ||||| |||| ||||||||
Sbjct 184 TCTTCAGGCAAAATCTCTGTCTCCAAAGCTAAGTCCACTCTCCGGAAAGAACACGATCCC 243
Query 127 GACAAAGC-CTTAGCGATTTA--CAAATCCGTCTCC-AACAACTCCTCATCTCCACTCTC 182
|||||||| |||| ||| || | ||| |||||| | | |||| | ||||| | ||
Sbjct 244 GACAAAGCTCTTA-AGATCTACGCCAAT--GTCTCCGATC-ACTCAGCCTCTCCTGTTTC 299
Query 183 CTCTCGCTACG-CCATGGAGCTCACAGTCCAACGTCTCGCTAAATCTCAACGCTTCTCTG 241
|||||||||| ||| |||||||| || | || ||||| || | || || ||||| |
Sbjct 300 ATCTCGCTACGCCCA-AGAGCTCACTGTTCGTCGCCTCGCCAAGTGTCGCCGTTTCTCAG 358
Query 242 ACATAGAAGCTCTAATTGAGTCTCACAAAAA-CAACCCAAAGATCAAA-ACAGAGACTTT 299
|||| ||| | |||||||| || |||||||| | |||||| |||||| | ||| || ||
Sbjct 359 ACATCGAAACCCTAATTGAATCCCACAAAAATGATCCCAAA-ATCAAAGA-AGA-ACCTT 415
Query 300 TCT-CTCTACACTTATCAGATCTTATGGACGAGCTTCAATGTTTGATCATGCTATGAAG- 357
||| |||||| |||||||||||||| || | ||| || |||||| |||| || ||| ||
Sbjct 416 TCTACTCTACGCTTATCAGATCTTACGGCCAAGCCTCTATGTTTAATCACGCCATG-AGA 474
Query 358 ATGTTCGAGGAGATGGATCAGAT-CGGGACACCAAGAACCGTTGTTTCCTTCAATGCCTT 416
| |||||| |||||||||| || ||| ||||| ||| | | |||||||||||| |||||
Sbjct 475 ACCTTCGAGCAGATGGATCA-ATACGGCACACCCAGATCAGCTGTTTCCTTCAACGCCTT 533
Query 417 ACTC-GCTGCTTGTCTTCATT-C-TGATTTGTTTGA-AAGAGTCCCCCAACTGTTCGACG 472
||| | |||||||| |||| | || | || || || ||||||||||||||||||||
Sbjct 534 GCTCAAC-GCTTGTCTCCATTCCAAGA-AT-TTCGATAA-AGTCCCCCAACTGTTCGACG 589
Query 473 AAATTCCTCAGAGGTATAATAATATTACTCC-TGATAAAGTCTCTTATGGTATGTTGATT 531
|||||||||||||||| ||||| || | ||| ||| ||| ||||||| ||||| ||||||
Sbjct 590 AAATTCCTCAGAGGTACAATAAGATCA-TCCCTGACAAAATCTCTTACGGTATATTGATT 648
Query 532 AAGTCGTATTGTGACTCTGGTTCGCCTGAAAAAGCTATGGAGATTATGAGAGATATGGA- 590
||||| || |||||||||||| | ||||||||||| || |||||||||||| | ||| |
Sbjct 649 AAGTCATACTGTGACTCTGGTACCCCTGAAAAAGCCATTGAGATTATGAGACAGATGCAA 708
Query 591 GGTTAAAGGTGTGGAAGTTACTATCATTGCTTTCACTACCATTTT-AGGATCTTTGTACA 649
||| ||||| |||||||||||| |||||||||||| |||||||| || || ||||| |
Sbjct 709 GGT-AAAGGCATGGAAGTTACTACCATTGCTTTCACCACCATTTTGAGT-TCATTGTATA 766
Query 650 AGAATGGTTTAG-TCGATGTAGCGGA-AAGCTTGTGGACCGAGATGGTGAATAAAGGCTG 707
|||| ||| || |||| ||||| || || |||||||| ||||||||||| ||||||||
Sbjct 767 AGAAAGGTG-AGCTCGAGGTAGCTGATAA-CTTGTGGAATGAGATGGTGAAGAAAGGCTG 824
Query 708 TGAATTGGATAACACTGTTTATAATGTTAG-ACTTATGAATGCTGCGAA-GGAAAGTCCC 765
|||||||||||| | | ||||||||| | | | |||| |||| | || |||||| |||
Sbjct 825 TGAATTGGATAATGCAGCGTATAATGTTCGTA-TAATGAGTGCT-CAAAAGGAAAG-CCC 881
Query 766 -GAAAGAGTTGGGGAATTGATGGAAGAAATGAGTAGTGTAGGATTGAAACCTGATACGGT 824
||||||||| ||| ||||| ||||||||||||||| | |||||||||||||||||| |
Sbjct 882 TGAAAGAGTTAAGGAGTTGATTGAAGAAATGAGTAGTATGGGATTGAAACCTGATACGAT 941
Query 825 TAGCTATAACTATCTTATGACTGCGTACTGCGTGAAAGGAATGATGGGTGAAGCCAAGAA 884
||||||||||||||||||||||||||| || | || ||||||| ||| ||||| |||||
Sbjct 942 TAGCTATAACTATCTTATGACTGCGTATTGTGAGAGAGGAATGTTGGACGAAGCTAAGAA 1001
Query 885 AGTGTATGAAGGGCTTGA-G----CAAC----CA---AACGCAGCGACGTTCAGGACATT 932
|||||||||||| ||||| | |||| | |||||||| || || ||||||||
Sbjct 1002 AGTGTATGAAGGACTTGAAGGTAACAACTGTGCTCCCAACGCAGCTACTTTTAGGACATT 1061
Query 933 GATATTTCATCTGTGT-ATAAATGGGTTGTATGATCAAGGTT-TAACGGTGTTTAAGAAG 990
|||||||||||| ||| ||| | ||||| || ||||| | | || | || ||||||
Sbjct 1062 GATATTTCATCTTTGTTATAGCCGA-TTGTACGAGCAAGGCTATG-CGATCTTCAAGAAG 1119
Query 991 AGTGCG-ATTGTGCACAAGATTCCGGATTTCAAAACTT-GTAAGCATTTGACTGAAGGG- 1047
|||| | || ||||||||||||| |||||||| |||| | ||||||||| || |||
Sbjct 1120 AGTGTGTATA-TGCACAAGATTCCAGATTTCAACACTTTG-AAGCATTTGGTTGT-GGGA 1176
Query 1048 TTGGTGAAAAATAACAGAATG-GAAGATGC-AAGAGGAGTGGCT-AGGACTGTGAAGAAG 1104
|||||| | || || | || | || || || || ||| || | | || || |||||||||
Sbjct 1177 TTGGTGGAGAACAAGAAAA-GAGATGACGCTAA-AGG-GTTGATTAGAACGGTGAAGAAG 1233
Query 1105 AAATTCCCTCCGCGTTTAGT-AACCGAGTGGAAGAAACTAGAGGAG-AAGCT-GGGTTTG 1161
|||||||||||| |||| | || | |||||||||||| |||||| || || ||| | |
Sbjct 1234 AAATTCCCTCCGAGTTTCTTGAAT-GCGTGGAAGAAACTCGAGGAGGAA-CTCGGGCT-G 1290
Query 1162 TATTC 1166
|||||
Sbjct 1291 TATTC 1295
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66565922670
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5