BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg480765 Length=1014 Score E Sequences producing significant alignments: (Bits) Value AT2G18620.1 | Symbols: | Terpenoid synthases superfamily prote... 728 0.0 AT4G36810.1 | Symbols: GGPS1 | geranylgeranyl pyrophosphate syn... 424 1e-117 > AT2G18620.1 | Symbols: | Terpenoid synthases superfamily protein | chr2:8078288-8079360 FORWARD LENGTH=1073 Length=1073 Score = 728 bits (394), Expect = 0.0 Identities = 528/592 (89%), Gaps = 12/592 (2%) Strand=Plus/Plus Query 425 TTTTCGGCGAAGACGTCGCGGTTTTAGCCGGAGACGCGCTTTTATCTTTCGCGTTTGAGC 484 ||||||| ||||||||||||||||||||||||||||||||| |||| ||||||||||||| Sbjct 490 TTTTCGGTGAAGACGTCGCGGTTTTAGCCGGAGACGCGCTTATATCGTTCGCGTTTGAGC 549 Query 485 ATTTAGTGACGGAGACGCCGGAAATTATTTCTCCGGCGAGAGTGGTTCGAGCAATTGGAG 544 | |||| || | | ||| | |||||||||| ||||| ||||||||||| |||| Sbjct 550 ACTTAGCAAC---GTCAACGG---CTGTTTCTCCGGCTAGAGTTGTTCGAGCAATCGGAG 603 Query 545 AATTAGCGAAAGCTATTGGATCAGAAGGGCTTGTGGCGGGTCAAGTCGTGGATCTAACCA 604 | ||||||||||| ||||||||| ||||||| |||||||||||||| ||||||||||||| Sbjct 604 AGTTAGCGAAAGCCATTGGATCAAAAGGGCTCGTGGCGGGTCAAGTAGTGGATCTAACCA 663 Query 605 GTGAAGGAATGGACCAAAACGACGTCGGATTAGAGCTTCTTGAGTTTATCCACGTTCATA 664 ||| |||||||||||||||||||||||| |||||| |||||||||||||||||||||||| Sbjct 664 GTGGAGGAATGGACCAAAACGACGTCGGCTTAGAGGTTCTTGAGTTTATCCACGTTCATA 723 Query 665 AAACCGCCGTGTTGTTAGAGGCGGCGACGGTGTTAGGTGCCATCGTCGGCGGTGGAACTA 724 ||||||||||||||||||||||||| ||||||||||| |||||||| || ||||| || Sbjct 724 AAACCGCCGTGTTGTTAGAGGCGGCTACGGTGTTAGGAGCCATCGTTGGTGGTGGTTCTG 783 Query 725 ATGAAGA-GATTGAGAGGTTAAGGAAGTTT-GCGAGATGTATTGGTTTGTTGTTTCAGGT 782 ||||||| | |||||| | | || ||| || |||||||| ||||| |||||||||||||| Sbjct 784 ATGAAGAAG-TTGAGAAGCTGAG-AAGATTCGCGAGATGCATTGGATTGTTGTTTCAGGT 841 Query 783 GGTGGACGGTATTTTGGATGTGACGAAGTCGTCGGAGGAATTGGGGAAA-ACCGCCGGGA 841 |||||||| ||||||||| |||||||||||||||||||||||||| ||| |||||||| | Sbjct 842 GGTGGACGATATTTTGGACGTGACGAAGTCGTCGGAGGAATTGGG-AAAGACCGCCGGAA 900 Query 842 AAGATTTGATCGCCGGTAAGCTGACGTATCCGAAACTAATGGCTCTTGAGAAATCTAAAG 901 ||||| |||| |||| |||||||||||||||||||||||||| ||||||||||||||||| Sbjct 901 AAGATCTGATTGCCGATAAGCTGACGTATCCGAAACTAATGGGTCTTGAGAAATCTAAAG 960 Query 902 ACTTTGCAGATAAATTATTGAGAGATGCTCAAGAACAACTTCATGGATTTGATTCGAATA 961 ||||||||||||| || ||||| |||||||| ||||| |||||||| |||||||||| || Sbjct 961 ACTTTGCAGATAAGTTGTTGAGCGATGCTCACGAACAGCTTCATGGGTTTGATTCGAGTA 1020 Query 962 AAGTTAAACCTTTATTAGCTTTGGCTAATTACATTGGCAAAAGACAGAATTA 1013 ||||||||||||| ||||||||||||||||||||| ||||||||||||||| Sbjct 1021 GAGTTAAACCTTTACTAGCTTTGGCTAATTACATTGCCAAAAGACAGAATTA 1072 Score = 399 bits (216), Expect = 2e-110 Identities = 373/445 (84%), Gaps = 26/445 (6%) Strand=Plus/Plus Query 1 AAAAACACTTGAGTTTCGAG--A--ACCATGACTACTCTAACTAAATCTATCAACCTGTC 56 ||||| |||||||||| ||| | |||||||||| | ||| |||||||||| | || Sbjct 2 AAAAAAACTTGAGTTTAGAGAAATCACCATGACTA--C--ACTCAATCTATCAATTTTTC 57 Query 57 CATCTG-T-CAA-A---A-C-CCGGATCCGTACCCGGATTCATCAAAATCCAACCTTTAC 108 |||| | | || | | | ||| |||| |||||||||||||||||||||||||||| | Sbjct 58 CATCAGTTAAAATATCCAGCTCCGCATCCATACCCGGATTCATCAAAATCCAACCTTT-C 116 Query 109 CT-CTCC--C------TCTCTACCGTTTCATCAGTCGTCACCGGAGAAGAAAGTGTCATC 159 || |||| | |||||||||||| ||| ||| | || |||| ||| || ||||| Sbjct 117 CTTCTCCGTCGGAAGCTCTCTACCGTTTTATCGGTCACCGCCAGAGACGAAGGTATCATC 176 Query 160 CACGACAAATTCGATTTCATGTCTTACATGATCGGAAAAGCAAATTCCGTTAATAAAGCT 219 ||| || | |||||||||| ||| ||||||||||||||||| ||| |||| ||| ||||| Sbjct 177 CACAACCATTTCGATTTCACGTCATACATGATCGGAAAAGCTAATGCCGTCAATGAAGCT 236 Query 220 CTTGACTCCGCCGTCTCGCTCCGAGAACCGATCAAGATCCATGCAGCGATGCGTTACTCG 279 || |||||||||||||||||||||||||| ||||||||||||| |||||| ||||||||| Sbjct 237 CTCGACTCCGCCGTCTCGCTCCGAGAACCAATCAAGATCCATGAAGCGATACGTTACTCG 296 Query 280 CTTCTCGCCGGGGGTAAACGAGTGAGACCCGTGCTCTGCATCGCCGCGTGCGAATAAGTC 339 ||||||||| | || ||||||||||||||||||||||| ||||| ||||| || | ||| Sbjct 297 CTTCTCGCCAGAGGCAAACGAGTGAGACCCGTGCTCTGTATCGCAGCGTGTGAGTTAGTG 356 Query 340 GGCGGCGAAGAATCCCTCGCGTTACCGGCGGCCTGCGCCGTGGAAATGATCCACACGATG 399 ||||||||||||||| | |||||||||||||| ||||||||||||||||||||||| ||| Sbjct 357 GGCGGCGAAGAATCCGTGGCGTTACCGGCGGCGTGCGCCGTGGAAATGATCCACACAATG 416 Query 400 TCGTTGATTCACGACGATCTTCCAT 424 |||||||| |||||||||||||||| Sbjct 417 TCGTTGATCCACGACGATCTTCCAT 441 > AT4G36810.1 | Symbols: GGPS1 | geranylgeranyl pyrophosphate synthase 1 | chr4:17343374-17344865 FORWARD LENGTH=1492 Length=1492 Score = 424 bits (229), Expect = 1e-117 Identities = 481/600 (80%), Gaps = 28/600 (5%) Strand=Plus/Plus Query 426 TTTCGGCGAAGACGTCGCGGTTTTAGCCGGAGACGCGCTTTTATCTTTCGCGTTT-GAGC 484 ||| || ||||||||||| ||||||||||||||||||||| | |||||||| ||| |||| Sbjct 665 TTT-GGTGAAGACGTCGCTGTTTTAGCCGGAGACGCGCTTCTCTCTTTCGC-TTTCGAGC 722 Query 485 ATTTAG-TGACGGAGAC--G-CCGGAAATTATTTCTCCGGCGAGAGTGGTTCGAGCAATT 540 |||||| | ||| ||| | | || || ||||||||| ||||||||||||||| || Sbjct 723 ATTTAGCT-TCGGCGACGAGTTCTGATGTTGTTTCTCCGGTGAGAGTGGTTCGAGCCGTT 781 Query 541 GGAGAATTAGCGAAAGCTATTGGATCAGAAGGGCTT-GTGGCGGGTCAAGTCGTGGATCT 599 |||||||| || ||||| || ||| |||||||| || ||||||||||||||||||||| | Sbjct 782 GGAGAATTGGCTAAAGCGATAGGAACAGAAGGG-TTAGTGGCGGGTCAAGTCGTGGATAT 840 Query 600 AACCAGTGAAGGAATGGACCAAAACGACGTCGGATTAGAGC-TTCTTGAGTTTATCCACG 658 | |||||||| | || |||||||||||| ||||||| || | ||||||||||| Sbjct 841 TAGTAGTGAAGGGTTAGATTTAAACGACGTCGGTTTAGAGCATT-TGGAGTTTATCCA-T 898 Query 659 TT-CATAAAACCGCCGTGTTG-TTAGAGGCGGC-GACGGTGTTAGGTGCCATCGTCGGCG 715 || |||||||| || | |||| || || || | | | || || || || || || || | Sbjct 899 TTGCATAAAACGGCGGCGTTGCTT-GAAGCTTCTG-CTGTTTTGGGAGCTATTGTTGGTG 956 Query 716 GTGGAACTAATGAAGAGATTGAGAGGTTAAGGAAGTTTGCGAGATGTATTGGTTTGTTGT 775 | |||| | |||| ||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 957 GAGGAAGTGATGATGAGATTGAGAGGTTAAGAAAGTTTGCGAGATGTATTGGTTTGTTGT 1016 Query 776 TTCAGGTGGTGGACGGTATTTTGGATGTGACGAAGTCGTCGGAGGAATTGGGGAAAACCG 835 |||||||||| || | ||| |||||||||||||| |||||| | || || |||||||| | Sbjct 1017 TTCAGGTGGTTGATGATATCTTGGATGTGACGAAATCGTCGAAAGAGTTAGGGAAAACTG 1076 Query 836 CCGGGAAAGATTTGATCGCCGGTAAGCTGACGTATCCGAA-ACTAATGGCTCTTG-AGAA 893 | |||||||||||||| || | |||| |||||||||| || | || ||| | ||| |||| Sbjct 1077 CTGGGAAAGATTTGATTGCTGATAAGTTGACGTATCCTAAGATTA-TGGGT-TTGGAGAA 1134 Query 894 ATCTAAAGACTTTGCAGATAAATT-ATTGAGAGATGCTCAAGAACAACTTC-ATGGATTT 951 ||| | ||| ||||| || ||||| | | ||||| |||| || || ||| | || ||| Sbjct 1135 ATCGAGAGAGTTTGCTGAGAAATTGAAT-AGAGAGGCTCGTGATCAGCTTTTAGGG-TTT 1192 Query 952 GATTC-GAATAAAGTTAAACCTTTATTAGCTTTGGCTAATTACATTGGCAAAAGACAGAA 1010 ||||| || ||| ||| ||||| || ||||||||||||||||||| | | |||||||| Sbjct 1193 GATTCTGA-TAAGGTTGCTCCTTTGTTGGCTTTGGCTAATTACATTGCCTATAGACAGAA 1251 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 49681571383 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5