BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480765
Length=1014
Score E
Sequences producing significant alignments: (Bits) Value
AT2G18620.1 | Symbols: | Terpenoid synthases superfamily prote... 728 0.0
AT4G36810.1 | Symbols: GGPS1 | geranylgeranyl pyrophosphate syn... 424 1e-117
> AT2G18620.1 | Symbols: | Terpenoid synthases superfamily protein
| chr2:8078288-8079360 FORWARD LENGTH=1073
Length=1073
Score = 728 bits (394), Expect = 0.0
Identities = 528/592 (89%), Gaps = 12/592 (2%)
Strand=Plus/Plus
Query 425 TTTTCGGCGAAGACGTCGCGGTTTTAGCCGGAGACGCGCTTTTATCTTTCGCGTTTGAGC 484
||||||| ||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct 490 TTTTCGGTGAAGACGTCGCGGTTTTAGCCGGAGACGCGCTTATATCGTTCGCGTTTGAGC 549
Query 485 ATTTAGTGACGGAGACGCCGGAAATTATTTCTCCGGCGAGAGTGGTTCGAGCAATTGGAG 544
| |||| || | | ||| | |||||||||| ||||| ||||||||||| ||||
Sbjct 550 ACTTAGCAAC---GTCAACGG---CTGTTTCTCCGGCTAGAGTTGTTCGAGCAATCGGAG 603
Query 545 AATTAGCGAAAGCTATTGGATCAGAAGGGCTTGTGGCGGGTCAAGTCGTGGATCTAACCA 604
| ||||||||||| ||||||||| ||||||| |||||||||||||| |||||||||||||
Sbjct 604 AGTTAGCGAAAGCCATTGGATCAAAAGGGCTCGTGGCGGGTCAAGTAGTGGATCTAACCA 663
Query 605 GTGAAGGAATGGACCAAAACGACGTCGGATTAGAGCTTCTTGAGTTTATCCACGTTCATA 664
||| |||||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct 664 GTGGAGGAATGGACCAAAACGACGTCGGCTTAGAGGTTCTTGAGTTTATCCACGTTCATA 723
Query 665 AAACCGCCGTGTTGTTAGAGGCGGCGACGGTGTTAGGTGCCATCGTCGGCGGTGGAACTA 724
||||||||||||||||||||||||| ||||||||||| |||||||| || ||||| ||
Sbjct 724 AAACCGCCGTGTTGTTAGAGGCGGCTACGGTGTTAGGAGCCATCGTTGGTGGTGGTTCTG 783
Query 725 ATGAAGA-GATTGAGAGGTTAAGGAAGTTT-GCGAGATGTATTGGTTTGTTGTTTCAGGT 782
||||||| | |||||| | | || ||| || |||||||| ||||| ||||||||||||||
Sbjct 784 ATGAAGAAG-TTGAGAAGCTGAG-AAGATTCGCGAGATGCATTGGATTGTTGTTTCAGGT 841
Query 783 GGTGGACGGTATTTTGGATGTGACGAAGTCGTCGGAGGAATTGGGGAAA-ACCGCCGGGA 841
|||||||| ||||||||| |||||||||||||||||||||||||| ||| |||||||| |
Sbjct 842 GGTGGACGATATTTTGGACGTGACGAAGTCGTCGGAGGAATTGGG-AAAGACCGCCGGAA 900
Query 842 AAGATTTGATCGCCGGTAAGCTGACGTATCCGAAACTAATGGCTCTTGAGAAATCTAAAG 901
||||| |||| |||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 901 AAGATCTGATTGCCGATAAGCTGACGTATCCGAAACTAATGGGTCTTGAGAAATCTAAAG 960
Query 902 ACTTTGCAGATAAATTATTGAGAGATGCTCAAGAACAACTTCATGGATTTGATTCGAATA 961
||||||||||||| || ||||| |||||||| ||||| |||||||| |||||||||| ||
Sbjct 961 ACTTTGCAGATAAGTTGTTGAGCGATGCTCACGAACAGCTTCATGGGTTTGATTCGAGTA 1020
Query 962 AAGTTAAACCTTTATTAGCTTTGGCTAATTACATTGGCAAAAGACAGAATTA 1013
||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct 1021 GAGTTAAACCTTTACTAGCTTTGGCTAATTACATTGCCAAAAGACAGAATTA 1072
Score = 399 bits (216), Expect = 2e-110
Identities = 373/445 (84%), Gaps = 26/445 (6%)
Strand=Plus/Plus
Query 1 AAAAACACTTGAGTTTCGAG--A--ACCATGACTACTCTAACTAAATCTATCAACCTGTC 56
||||| |||||||||| ||| | |||||||||| | ||| |||||||||| | ||
Sbjct 2 AAAAAAACTTGAGTTTAGAGAAATCACCATGACTA--C--ACTCAATCTATCAATTTTTC 57
Query 57 CATCTG-T-CAA-A---A-C-CCGGATCCGTACCCGGATTCATCAAAATCCAACCTTTAC 108
|||| | | || | | | ||| |||| |||||||||||||||||||||||||||| |
Sbjct 58 CATCAGTTAAAATATCCAGCTCCGCATCCATACCCGGATTCATCAAAATCCAACCTTT-C 116
Query 109 CT-CTCC--C------TCTCTACCGTTTCATCAGTCGTCACCGGAGAAGAAAGTGTCATC 159
|| |||| | |||||||||||| ||| ||| | || |||| ||| || |||||
Sbjct 117 CTTCTCCGTCGGAAGCTCTCTACCGTTTTATCGGTCACCGCCAGAGACGAAGGTATCATC 176
Query 160 CACGACAAATTCGATTTCATGTCTTACATGATCGGAAAAGCAAATTCCGTTAATAAAGCT 219
||| || | |||||||||| ||| ||||||||||||||||| ||| |||| ||| |||||
Sbjct 177 CACAACCATTTCGATTTCACGTCATACATGATCGGAAAAGCTAATGCCGTCAATGAAGCT 236
Query 220 CTTGACTCCGCCGTCTCGCTCCGAGAACCGATCAAGATCCATGCAGCGATGCGTTACTCG 279
|| |||||||||||||||||||||||||| ||||||||||||| |||||| |||||||||
Sbjct 237 CTCGACTCCGCCGTCTCGCTCCGAGAACCAATCAAGATCCATGAAGCGATACGTTACTCG 296
Query 280 CTTCTCGCCGGGGGTAAACGAGTGAGACCCGTGCTCTGCATCGCCGCGTGCGAATAAGTC 339
||||||||| | || ||||||||||||||||||||||| ||||| ||||| || | |||
Sbjct 297 CTTCTCGCCAGAGGCAAACGAGTGAGACCCGTGCTCTGTATCGCAGCGTGTGAGTTAGTG 356
Query 340 GGCGGCGAAGAATCCCTCGCGTTACCGGCGGCCTGCGCCGTGGAAATGATCCACACGATG 399
||||||||||||||| | |||||||||||||| ||||||||||||||||||||||| |||
Sbjct 357 GGCGGCGAAGAATCCGTGGCGTTACCGGCGGCGTGCGCCGTGGAAATGATCCACACAATG 416
Query 400 TCGTTGATTCACGACGATCTTCCAT 424
|||||||| ||||||||||||||||
Sbjct 417 TCGTTGATCCACGACGATCTTCCAT 441
> AT4G36810.1 | Symbols: GGPS1 | geranylgeranyl pyrophosphate synthase
1 | chr4:17343374-17344865 FORWARD LENGTH=1492
Length=1492
Score = 424 bits (229), Expect = 1e-117
Identities = 481/600 (80%), Gaps = 28/600 (5%)
Strand=Plus/Plus
Query 426 TTTCGGCGAAGACGTCGCGGTTTTAGCCGGAGACGCGCTTTTATCTTTCGCGTTT-GAGC 484
||| || ||||||||||| ||||||||||||||||||||| | |||||||| ||| ||||
Sbjct 665 TTT-GGTGAAGACGTCGCTGTTTTAGCCGGAGACGCGCTTCTCTCTTTCGC-TTTCGAGC 722
Query 485 ATTTAG-TGACGGAGAC--G-CCGGAAATTATTTCTCCGGCGAGAGTGGTTCGAGCAATT 540
|||||| | ||| ||| | | || || ||||||||| ||||||||||||||| ||
Sbjct 723 ATTTAGCT-TCGGCGACGAGTTCTGATGTTGTTTCTCCGGTGAGAGTGGTTCGAGCCGTT 781
Query 541 GGAGAATTAGCGAAAGCTATTGGATCAGAAGGGCTT-GTGGCGGGTCAAGTCGTGGATCT 599
|||||||| || ||||| || ||| |||||||| || ||||||||||||||||||||| |
Sbjct 782 GGAGAATTGGCTAAAGCGATAGGAACAGAAGGG-TTAGTGGCGGGTCAAGTCGTGGATAT 840
Query 600 AACCAGTGAAGGAATGGACCAAAACGACGTCGGATTAGAGC-TTCTTGAGTTTATCCACG 658
| |||||||| | || |||||||||||| ||||||| || | |||||||||||
Sbjct 841 TAGTAGTGAAGGGTTAGATTTAAACGACGTCGGTTTAGAGCATT-TGGAGTTTATCCA-T 898
Query 659 TT-CATAAAACCGCCGTGTTG-TTAGAGGCGGC-GACGGTGTTAGGTGCCATCGTCGGCG 715
|| |||||||| || | |||| || || || | | | || || || || || || || |
Sbjct 899 TTGCATAAAACGGCGGCGTTGCTT-GAAGCTTCTG-CTGTTTTGGGAGCTATTGTTGGTG 956
Query 716 GTGGAACTAATGAAGAGATTGAGAGGTTAAGGAAGTTTGCGAGATGTATTGGTTTGTTGT 775
| |||| | |||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 957 GAGGAAGTGATGATGAGATTGAGAGGTTAAGAAAGTTTGCGAGATGTATTGGTTTGTTGT 1016
Query 776 TTCAGGTGGTGGACGGTATTTTGGATGTGACGAAGTCGTCGGAGGAATTGGGGAAAACCG 835
|||||||||| || | ||| |||||||||||||| |||||| | || || |||||||| |
Sbjct 1017 TTCAGGTGGTTGATGATATCTTGGATGTGACGAAATCGTCGAAAGAGTTAGGGAAAACTG 1076
Query 836 CCGGGAAAGATTTGATCGCCGGTAAGCTGACGTATCCGAA-ACTAATGGCTCTTG-AGAA 893
| |||||||||||||| || | |||| |||||||||| || | || ||| | ||| ||||
Sbjct 1077 CTGGGAAAGATTTGATTGCTGATAAGTTGACGTATCCTAAGATTA-TGGGT-TTGGAGAA 1134
Query 894 ATCTAAAGACTTTGCAGATAAATT-ATTGAGAGATGCTCAAGAACAACTTC-ATGGATTT 951
||| | ||| ||||| || ||||| | | ||||| |||| || || ||| | || |||
Sbjct 1135 ATCGAGAGAGTTTGCTGAGAAATTGAAT-AGAGAGGCTCGTGATCAGCTTTTAGGG-TTT 1192
Query 952 GATTC-GAATAAAGTTAAACCTTTATTAGCTTTGGCTAATTACATTGGCAAAAGACAGAA 1010
||||| || ||| ||| ||||| || ||||||||||||||||||| | | ||||||||
Sbjct 1193 GATTCTGA-TAAGGTTGCTCCTTTGTTGGCTTTGGCTAATTACATTGCCTATAGACAGAA 1251
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49681571383
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5