BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480767
Length=1134
Score E
Sequences producing significant alignments: (Bits) Value
AT2G18640.1 | Symbols: GGPS4 | geranylgeranyl pyrophosphate syn... 1674 0.0
> AT2G18640.1 | Symbols: GGPS4 | geranylgeranyl pyrophosphate synthase
4 | chr2:8083740-8084888 REVERSE LENGTH=1149
Length=1149
Score = 1674 bits (906), Expect = 0.0
Identities = 1059/1135 (93%), Gaps = 2/1135 (0%)
Strand=Plus/Plus
Query 1 TATTGTTGATCAAAATGGAAGCTCAAAATATCTTTCTCTATCTTTTAATCGTCTTTCTAT 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 3 TATTGTTGATCAAAATGGAAGCTCAAAATATCTTTCTCTATCTTTTGATCGTCTTTCTAT 62
Query 61 CTCTACATTTTGTGTTTGCAACTCTGAAAGGACGGCTGAGTCCGGCTAATACACGGCGGC 120
||||||| || |||||| ||||||||||||||||||||||||| || |||||||||||||
Sbjct 63 CTCTACACTTCGTGTTTACAACTCTGAAAGGACGGCTGAGTCCCGCGAATACACGGCGGC 122
Query 121 TTATCCGCCTTCTCCATCTCCCGATCAAATCACCAGCCGCCGCTGCTATTTTCGCCAGAA 180
||||||||||||||||| ||||||||||||| || | |||||||||||||||||| ||||
Sbjct 123 TTATCCGCCTTCTCCATATCCCGATCAAATCTCCGGTCGCCGCTGCTATTTTCGCTAGAA 182
Query 181 AAGACATCCGTGAGTTTCTTGATTCATCAATCAAATTAGTAAACGAAGAAGATGATTTCG 240
|||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 183 AAGACACCCGTGAGTTTCTTGATTCATCAATCAAATTAGTAAACGAAGAAGACGATTTCG 242
Query 241 GCTTCAACTTCGATTTCAAACCATACATGATCAACAAAGCAGAGACAATAAACAGAGCAT 300
| |||| |||||||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct 243 GTTTCAGTTTCGATTTCAAACCGTACATGATCAGCAAAGCAGAGACAATAAACAGAGCAT 302
Query 301 TAGACGAAGCCATTCCACTCATTGAGCCTCTCAACATCCACAAGGCAATGCGTTACGCGA 360
|||| ||||| |||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 303 TAGATGAAGCAATTCCACTTATTGAGCCACTCAACATCCACAAGGCAATGCGTTACGCGA 362
Query 361 TTCTCGCCGGAGGCAAACGTGTCAGGCCAATACTCTGCCTCGCTGCGTGTGAGCTAGTCG 420
||||||| || || |||||||||||||||||||||||||| || || || ||||||||||
Sbjct 363 TTCTCGCAGGCGGAAAACGTGTCAGGCCAATACTCTGCCTAGCCGCTTGCGAGCTAGTCG 422
Query 421 GCGGGGAAGAGCGTTTGGCGATTCAAGCGGCTTGTGCGGTTGAAATGATCCACACAATGT 480
|||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 423 GCGGGGAAGAGCGTTTAGCGATTCAAGCGGCTTGTGCAGTTGAAATGATTCACACAATGT 482
Query 481 CACTCATCAAAGACGATCTTCCTTGTATGGATAACGACGATCTCCGGCGAGGCAAACCAA 540
||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||
Sbjct 483 CACTCATCAAAGACGATCTTCCTTGTATGGACAACGACGATCTCCGACGAGGGAAACCAA 542
Query 541 CAACACACAAAGTATTCGGAGAAAGTGTAGCTATTCTCTCCGGCGGCGCACTTTTAGCTC 600
||||||| ||||| ||||||||||| ||||| || |||||||||||||||||||||||||
Sbjct 543 CAACACATAAAGTCTTCGGAGAAAGCGTAGCCATACTCTCCGGCGGCGCACTTTTAGCTC 602
Query 601 TAGCTTTCGAGCATTTGACGGAAGCTGACGTGTCTTCCAAGAAAATGGTTCGAGTCGTTA 660
|||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct 603 TAGCTTTCGAGCATTTGACGGAAGCTGACGTGTCATCCAAGAAAATGGTTCGAGCCGTTA 662
Query 661 AAGAATTGGCTAAGTCTATTGGAACGAAAGGACTTGTGGCGGGACAAGCGATGGATTTAA 720
|||||||||||||||||||||||||||||||||| || |||||||| |||| ||||||||
Sbjct 663 AAGAATTGGCTAAGTCTATTGGAACGAAAGGACTCGTAGCGGGACAGGCGAAGGATTTAA 722
Query 721 GCAGTGAAGGGCTGGATCCAAACGACGTCGGATTGGAGGATCTTGAATATATTCACGTTC 780
||||||||||| |||| | |||||| |||||||| |||||||||||||||||||||||||
Sbjct 723 GCAGTGAAGGGTTGGAACAAAACGATGTCGGATTAGAGGATCTTGAATATATTCACGTTC 782
Query 781 ATAAAACCGGTGCGTTGCTCGAAGCATCAGCGGTTATCGGAGCGGTTATTGGCGGTGGAT 840
||||||||||| ||||||| |||||||| |||||||||||||||||||| |||||||||
Sbjct 783 ATAAAACCGGTTCGTTGCTTGAAGCATCTGCGGTTATCGGAGCGGTTATAGGCGGTGGAA 842
Query 841 CAGAGGAAGAGATAGAGAAGGTGAGATACTTTGCGAGGTGTATTGGCTTGTTGTTTCAGG 900
||||| ||||||||||||| |||||| |||||||||||||||| || |||||||||||||
Sbjct 843 CAGAGAAAGAGATAGAGAAAGTGAGAAACTTTGCGAGGTGTATCGGATTGTTGTTTCAGG 902
Query 901 TTGTTGATGATATCTTGGATGAGACCAAGTCCTCGGAGGAATTGGGAAAAACCGCCGGAA 960
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 903 TGGTTGATGATATCTTGGATGAGACCAAGTCGTCGGAGGAATTGGGAAAAACCGCCGGAA 962
Query 961 AAGATCAGGTCGCCGGAAAGCTGACGTATCCGAAAGTGATGGGTCTTGAGAAATCTAAGG 1020
||||| ||||||||||||||||||||||||| |||||||| ||| |||||||||||||||
Sbjct 963 AAGATAAGGTCGCCGGAAAGCTGACGTATCCAAAAGTGATTGGTGTTGAGAAATCTAAGG 1022
Query 1021 AGTTCGTGAAGAAGTTGAAGAGAGAAGCTAAAGAACA-CATTCAAGGGTTTGATTCTGAC 1079
|||| ||| |||||||||||||||| || | |||||| | ||||||||||||||||||||
Sbjct 1023 AGTTTGTGGAGAAGTTGAAGAGAGATGCGAGAGAACATC-TTCAAGGGTTTGATTCTGAC 1081
Query 1080 AAAGTGAAACCTTTGATAGCTCTTACTAACTTCATTGCCAACAGAAACAACTGAA 1134
||||| |||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1082 AAAGTCAAACCTTTGATAGCTCTTACTAACTTCATTGCCAACAGAAACCACTGAA 1136
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55622203860
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5