BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480768
Length=1242
Score E
Sequences producing significant alignments: (Bits) Value
AT2G18650.1 | Symbols: MEE16 | RING/U-box superfamily protein |... 1707 0.0
AT4G30400.1 | Symbols: | RING/U-box superfamily protein | chr4... 161 1e-38
> AT2G18650.1 | Symbols: MEE16 | RING/U-box superfamily protein
| chr2:8086860-8088131 REVERSE LENGTH=1272
Length=1272
Score = 1707 bits (924), Expect = 0.0
Identities = 1157/1261 (92%), Gaps = 49/1261 (4%)
Strand=Plus/Plus
Query 8 AGAATTTGATCTCTTCTTcaccaccaccaccaccaTTGATACCTCTCAAATCAAACACAA 67
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 35 AGAATTTGATCTCTTCTT---CACCACCACCACCATTGATACCTCTCAAATCAAACACAA 91
Query 68 GC-T-TC-GATTTAAACAACAAAATCACACCAAATATTCTTCTAATAATCATAATCCTCT 124
|| | || ||||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct 92 GCTTGTCAAATTTAAACAGCAAAATCACTCCAAATATTCTTCTAATAATCATAATCCTCT 151
Query 125 CGATCATCTTCTTCATCTCTGGTCTTCTCCATATCCTTGTCAAATTCCTCCTCACACCAT 184
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 152 CGATCATCTTCTTCATCTCTGGTCTTCTCCATATTCTTGTCAAATTCCTCCTCACACCAT 211
Query 185 CAACACAAAACAGAGAAGATTACTTCGACAATGTTACAGCTCTTCAAGGCCAGCTTCAAC 244
||| | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 212 CAAGAGAAAGCAGAGAAGATTACTTCGACAATGTTACAGCTCTTCAAGGCCAGCTTCAAC 271
Query 245 AACTCTTTAACCTCCATGATTCTGGCGTCGACCAATCCTTAATCGACACGTTACCTGTAT 304
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 272 AACTCTTTAACCTCCATGATTCTGGCGTTGACCAATCCTTAATCGACACGTTACCTGTTT 331
Query 305 TTCATTACAAATCTATCATTGGTCTCAAAATCTCTCCTTTTGATTGTCCTGTTTGTCTCT 364
|||||||||| || || | ||||||||||||||||||||||||||||||||||||||||
Sbjct 332 TTCATTACAAGTCCATTGTCGGTCTCAAAATCTCTCCTTTTGATTGTCCTGTTTGTCTCT 391
Query 365 GTGAGTTCGAAACAGAGGACAAACTTAGACTCTTGCCTAAATGCAGCCATGCCTTTCACG 424
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 392 GTGAGTTTGAAACAGAGGATAAACTTAGACTCTTGCCTAAATGCAGCCATGCCTTTCACG 451
Query 425 TTGAGTGTATCGATACGTGGCTTCTCTCTCACTCTACTTGTCCCTTGTGTAGATCTAACC 484
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 452 TTGAGTGTATCGACACGTGGCTTCTCTCTCACTCTACTTGTCCCTTGTGTAGATCTAATC 511
Query 485 TCCTCTCTGGTTTCTCGTCTCACCACAATCTAAGCTCCTCGTATCTACTTGTTCTTGAGA 544
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 512 TCCTCTCTGGTTTTTCGTCTCACCACAATCTAAGCTCCTCGTATCTACTTGTTCTTGAGA 571
Query 545 GTGAACAAAGCTCGAGAGATATGGTTCCTGTTCTTGAGTCTAATTCCCAACT-GTGTATT 603
||||||||||||||||||||||||||||||||||||||||||| || ||||| | || |
Sbjct 572 GTGAACAAAGCTCGAGAGATATGGTTCCTGTTCTTGAGTCTAACTCTCAACTAG-GT-T- 628
Query 604 GATGATGGGAACAATGATTTTGAGTCGACCCGGATTAGGTCGGGTCGTAAATCATGTGAC 663
|||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 629 -ATGATGTGAACAATGATTCTGAGTCGACCCGGATTAGGTCGGGTCGTAAATCATGTGAC 687
Query 664 CCGGATGGTGA-ATTGGATGGTTTAGATGGAAAGGTTGTTCCTTTAGAAGTTAAGTTAGG 722
||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 688 CCGGATGGTGACAT-GGATGGTTTAGATGAAAAGGTTGTTCCTTTAGAAGTTAAGTTAGG 746
Query 723 GAAATTTAGGAACATAGATCATGTCAATGAAGGAAGTGACAACGACAACAAAAATAGCAT 782
||| |||||||||||||||||||| ||||||||||||| | || | |||||||||||
Sbjct 747 GAAGTTTAGGAACATAGATCATGTTGGTGAAGGAAGTGACCA-GA-AG-AAAAATAGCAT 803
Query 783 AAGTGGTAATAGCATTAATGTAGATGGAAGGAGGTGTTTGTCAATGGGATCATATGAGTA 842
|||||||||||| | ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 804 AAGTGGTAATAGTAAAAATGTGGATGGAAGGAGGTGTTTGTCAATGGGATCATATGAGTA 863
Query 843 TATTATGGACCAAGAAGCTACACTTAAGGTTCACATTTCGACCAAGAAACTA-CC--A-- 897
||||||||| ||||||||||||||||||||||| ||||||||||||||||| || |
Sbjct 864 TATTATGGATCAAGAAGCTACACTTAAGGTTCATGTTTCGACCAAGAAACTATCCGGAAA 923
Query 898 -G---G----C--A---ACAGGGCCGTTGTGTCCGAATGCGGTTTGGATCCAACAGTTAA 944
| | | | ||||| ||||| |||||||||||||||| ||||||||||||||
Sbjct 924 AGACCGGGTGCCGAGCCACAGGACCGTTATGTCCGAATGCGGTTTTGATCCAACAGTTAA 983
Query 945 GGGAATCGAGAAGAGTGTTGTGGAAAGAGAGAGCTTTTCTTTGTCGAAAATTTGGCTAGG 1004
|||||| ||||||||||||||||| || |||||||||||||| ||||||||||||||| |
Sbjct 984 GGGAATTGAGAAGAGTGTTGTGGAGAGGGAGAGCTTTTCTTTATCGAAAATTTGGCTAAG 1043
Query 1005 GGGTAAAAAGGAGAAGCAAAAGGGTTCTAGTGCTAGAGAT-CAGGATTGTTCTT-CGGTG 1062
|||||||||||||||||||||||| |||||||||||||| | ||||||||||| || ||
Sbjct 1044 GGGTAAAAAGGAGAAGCAAAAGGGGACTAGTGCTAGAGATTC-GGATTGTTCTTTCG-TG 1101
Query 1063 TCTTCCTCCTCACTCCGATTTCCAAACCATCGGATATC-TCGCGAGATCAATGAAGAGAG 1121
|||||||| |||||||| ||||||||||||||||| || || | | ||||||||
Sbjct 1102 TCTTCCTCTTCACTCCGGTTTCCAAACCATCGGAT-TCCTC-C-----C---GAAGAGAG 1151
Query 1122 TCAAAAGAGCGAAAATTCGGAGTCTTTGGAGACGAAAACGCCATCTTTTGCTAGGAGGAC 1181
|| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1152 TCTTAAGAGCGAAAATTCGGAATCTTTGGAGACGAAAACGCCATCTTTTGCTAGGAGGAC 1211
Query 1182 CATGCTTTGGCTTGCAGGGAGACAAAACAAGGTTGTTCAGCCTTCTACATCCAATGTTTA 1241
||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct 1212 CATGCATTGGCTTGCAGGGAGACAAAACAAGATTGTTCAGCCTTCTACATCCAATGTCTA 1271
Query 1242 G 1242
|
Sbjct 1272 G 1272
> AT4G30400.1 | Symbols: | RING/U-box superfamily protein | chr4:14866946-14868628
FORWARD LENGTH=1683
Length=1683
Score = 161 bits (87), Expect = 1e-38
Identities = 105/114 (92%), Gaps = 0/114 (0%)
Strand=Plus/Plus
Query 1114 GAAGAGAGTCAAAAGAGCGAAAATTCGGAGTCTTTGGAGACGAAAACGCCATCTTTTGCT 1173
||||| | ||||||| ||||||| ||||||||||||||||| ||||| ||||||||||||
Sbjct 1410 GAAGATAATCAAAAGTGCGAAAACTCGGAGTCTTTGGAGACTAAAACACCATCTTTTGCT 1469
Query 1174 AGGAGGACCATGCTTTGGCTTGCAGGGAGACAAAACAAGGTTGTTCAGCCTTCT 1227
|||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1470 AGGAGGACTATGCTTTGGCTTGCAGGGAGACAAAACAAGGTTGTTCATTCTTCT 1523
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61043862720
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5