BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg480768 Length=1242 Score E Sequences producing significant alignments: (Bits) Value AT2G18650.1 | Symbols: MEE16 | RING/U-box superfamily protein |... 1707 0.0 AT4G30400.1 | Symbols: | RING/U-box superfamily protein | chr4... 161 1e-38 > AT2G18650.1 | Symbols: MEE16 | RING/U-box superfamily protein | chr2:8086860-8088131 REVERSE LENGTH=1272 Length=1272 Score = 1707 bits (924), Expect = 0.0 Identities = 1157/1261 (92%), Gaps = 49/1261 (4%) Strand=Plus/Plus Query 8 AGAATTTGATCTCTTCTTcaccaccaccaccaccaTTGATACCTCTCAAATCAAACACAA 67 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 35 AGAATTTGATCTCTTCTT---CACCACCACCACCATTGATACCTCTCAAATCAAACACAA 91 Query 68 GC-T-TC-GATTTAAACAACAAAATCACACCAAATATTCTTCTAATAATCATAATCCTCT 124 || | || ||||||||| ||||||||| ||||||||||||||||||||||||||||||| Sbjct 92 GCTTGTCAAATTTAAACAGCAAAATCACTCCAAATATTCTTCTAATAATCATAATCCTCT 151 Query 125 CGATCATCTTCTTCATCTCTGGTCTTCTCCATATCCTTGTCAAATTCCTCCTCACACCAT 184 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 152 CGATCATCTTCTTCATCTCTGGTCTTCTCCATATTCTTGTCAAATTCCTCCTCACACCAT 211 Query 185 CAACACAAAACAGAGAAGATTACTTCGACAATGTTACAGCTCTTCAAGGCCAGCTTCAAC 244 ||| | ||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 212 CAAGAGAAAGCAGAGAAGATTACTTCGACAATGTTACAGCTCTTCAAGGCCAGCTTCAAC 271 Query 245 AACTCTTTAACCTCCATGATTCTGGCGTCGACCAATCCTTAATCGACACGTTACCTGTAT 304 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | Sbjct 272 AACTCTTTAACCTCCATGATTCTGGCGTTGACCAATCCTTAATCGACACGTTACCTGTTT 331 Query 305 TTCATTACAAATCTATCATTGGTCTCAAAATCTCTCCTTTTGATTGTCCTGTTTGTCTCT 364 |||||||||| || || | |||||||||||||||||||||||||||||||||||||||| Sbjct 332 TTCATTACAAGTCCATTGTCGGTCTCAAAATCTCTCCTTTTGATTGTCCTGTTTGTCTCT 391 Query 365 GTGAGTTCGAAACAGAGGACAAACTTAGACTCTTGCCTAAATGCAGCCATGCCTTTCACG 424 ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 392 GTGAGTTTGAAACAGAGGATAAACTTAGACTCTTGCCTAAATGCAGCCATGCCTTTCACG 451 Query 425 TTGAGTGTATCGATACGTGGCTTCTCTCTCACTCTACTTGTCCCTTGTGTAGATCTAACC 484 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | Sbjct 452 TTGAGTGTATCGACACGTGGCTTCTCTCTCACTCTACTTGTCCCTTGTGTAGATCTAATC 511 Query 485 TCCTCTCTGGTTTCTCGTCTCACCACAATCTAAGCTCCTCGTATCTACTTGTTCTTGAGA 544 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 512 TCCTCTCTGGTTTTTCGTCTCACCACAATCTAAGCTCCTCGTATCTACTTGTTCTTGAGA 571 Query 545 GTGAACAAAGCTCGAGAGATATGGTTCCTGTTCTTGAGTCTAATTCCCAACT-GTGTATT 603 ||||||||||||||||||||||||||||||||||||||||||| || ||||| | || | Sbjct 572 GTGAACAAAGCTCGAGAGATATGGTTCCTGTTCTTGAGTCTAACTCTCAACTAG-GT-T- 628 Query 604 GATGATGGGAACAATGATTTTGAGTCGACCCGGATTAGGTCGGGTCGTAAATCATGTGAC 663 |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 629 -ATGATGTGAACAATGATTCTGAGTCGACCCGGATTAGGTCGGGTCGTAAATCATGTGAC 687 Query 664 CCGGATGGTGA-ATTGGATGGTTTAGATGGAAAGGTTGTTCCTTTAGAAGTTAAGTTAGG 722 ||||||||||| || |||||||||||||| |||||||||||||||||||||||||||||| Sbjct 688 CCGGATGGTGACAT-GGATGGTTTAGATGAAAAGGTTGTTCCTTTAGAAGTTAAGTTAGG 746 Query 723 GAAATTTAGGAACATAGATCATGTCAATGAAGGAAGTGACAACGACAACAAAAATAGCAT 782 ||| |||||||||||||||||||| ||||||||||||| | || | ||||||||||| Sbjct 747 GAAGTTTAGGAACATAGATCATGTTGGTGAAGGAAGTGACCA-GA-AG-AAAAATAGCAT 803 Query 783 AAGTGGTAATAGCATTAATGTAGATGGAAGGAGGTGTTTGTCAATGGGATCATATGAGTA 842 |||||||||||| | ||||| |||||||||||||||||||||||||||||||||||||| Sbjct 804 AAGTGGTAATAGTAAAAATGTGGATGGAAGGAGGTGTTTGTCAATGGGATCATATGAGTA 863 Query 843 TATTATGGACCAAGAAGCTACACTTAAGGTTCACATTTCGACCAAGAAACTA-CC--A-- 897 ||||||||| ||||||||||||||||||||||| ||||||||||||||||| || | Sbjct 864 TATTATGGATCAAGAAGCTACACTTAAGGTTCATGTTTCGACCAAGAAACTATCCGGAAA 923 Query 898 -G---G----C--A---ACAGGGCCGTTGTGTCCGAATGCGGTTTGGATCCAACAGTTAA 944 | | | | ||||| ||||| |||||||||||||||| |||||||||||||| Sbjct 924 AGACCGGGTGCCGAGCCACAGGACCGTTATGTCCGAATGCGGTTTTGATCCAACAGTTAA 983 Query 945 GGGAATCGAGAAGAGTGTTGTGGAAAGAGAGAGCTTTTCTTTGTCGAAAATTTGGCTAGG 1004 |||||| ||||||||||||||||| || |||||||||||||| ||||||||||||||| | Sbjct 984 GGGAATTGAGAAGAGTGTTGTGGAGAGGGAGAGCTTTTCTTTATCGAAAATTTGGCTAAG 1043 Query 1005 GGGTAAAAAGGAGAAGCAAAAGGGTTCTAGTGCTAGAGAT-CAGGATTGTTCTT-CGGTG 1062 |||||||||||||||||||||||| |||||||||||||| | ||||||||||| || || Sbjct 1044 GGGTAAAAAGGAGAAGCAAAAGGGGACTAGTGCTAGAGATTC-GGATTGTTCTTTCG-TG 1101 Query 1063 TCTTCCTCCTCACTCCGATTTCCAAACCATCGGATATC-TCGCGAGATCAATGAAGAGAG 1121 |||||||| |||||||| ||||||||||||||||| || || | | |||||||| Sbjct 1102 TCTTCCTCTTCACTCCGGTTTCCAAACCATCGGAT-TCCTC-C-----C---GAAGAGAG 1151 Query 1122 TCAAAAGAGCGAAAATTCGGAGTCTTTGGAGACGAAAACGCCATCTTTTGCTAGGAGGAC 1181 || ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1152 TCTTAAGAGCGAAAATTCGGAATCTTTGGAGACGAAAACGCCATCTTTTGCTAGGAGGAC 1211 Query 1182 CATGCTTTGGCTTGCAGGGAGACAAAACAAGGTTGTTCAGCCTTCTACATCCAATGTTTA 1241 ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| || Sbjct 1212 CATGCATTGGCTTGCAGGGAGACAAAACAAGATTGTTCAGCCTTCTACATCCAATGTCTA 1271 Query 1242 G 1242 | Sbjct 1272 G 1272 > AT4G30400.1 | Symbols: | RING/U-box superfamily protein | chr4:14866946-14868628 FORWARD LENGTH=1683 Length=1683 Score = 161 bits (87), Expect = 1e-38 Identities = 105/114 (92%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 1114 GAAGAGAGTCAAAAGAGCGAAAATTCGGAGTCTTTGGAGACGAAAACGCCATCTTTTGCT 1173 ||||| | ||||||| ||||||| ||||||||||||||||| ||||| |||||||||||| Sbjct 1410 GAAGATAATCAAAAGTGCGAAAACTCGGAGTCTTTGGAGACTAAAACACCATCTTTTGCT 1469 Query 1174 AGGAGGACCATGCTTTGGCTTGCAGGGAGACAAAACAAGGTTGTTCAGCCTTCT 1227 |||||||| |||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1470 AGGAGGACTATGCTTTGGCTTGCAGGGAGACAAAACAAGGTTGTTCATTCTTCT 1523 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 61043862720 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5