BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480770
Length=870
Score E
Sequences producing significant alignments: (Bits) Value
AT2G18680.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1341 0.0
AT2G18670.1 | Symbols: | RING/U-box superfamily protein | chr2... 1341 0.0
AT2G18690.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 848 0.0
> AT2G18680.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; EXPRESSED IN: male gametophyte,
pollen tube; EXPRESSED DURING: L mature pollen stage,
M germinated pollen stage; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT2G18690.1); Has 30201
Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria
- 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037;
Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
| chr2:8094780-8095779 FORWARD LENGTH=1000
Length=1000
Score = 1341 bits (726), Expect = 0.0
Identities = 823/870 (95%), Gaps = 6/870 (1%)
Strand=Plus/Plus
Query 1 ATGTTCTCAGTCTTGGCATTCCCTCTCTTACTCAATTGTTTAGTTTACTTGTTCAAGGCC 60
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1 ATGTTCTCAGTCTTGGTATTCCCTCTCTTACTCAATTGTTTAGTTTACTTGTTCAACGCC 60
Query 61 ATTGCCATCAAACCCGAGATAACAAACTTGATCCTTGAATCAAGTTTGTTACCTATGACA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ATTGCCATCAAACCCGAGATAACAAACTTGATCCTTGAATCAAGTTTGTTACCTATGACA 120
Query 121 GATCCAAACACCCCGGAATATGCAGCCCATCTTATGAGAGTCTTTGCAGATTTTCGTCAG 180
||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||| |||
Sbjct 121 GATCCAAACACCCCGGAATTTGCTGCCCATCTTATGAGAGTCTTTGTAGATTTTCGCCAG 180
Query 181 TTTGTTAGTTCTTTATACATCATCTTGGCCGTCTCCTCCATCATCAACCTCTTATCCACT 240
||||| | ||||||||||||| || | ||||||||||||||||||||||| |||||||||
Sbjct 181 TTTGTCAATTCTTTATACATCTTCATCGCCGTCTCCTCCATCATCAACCTTTTATCCACT 240
Query 241 CTTGTCATCGTTCACGCATCGGCTCTTACTCATAAAGATGATAGCTTCGAGATCAAAGAT 300
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CTTGTCATGGTTCATGCATCGGCTCTTACTCATAAAGATGATAGCTTCGAGATCAAAGAT 300
Query 301 TTTCCTATTCTGACCCTTAAATATTGGAAGGGACTTCTTGTGACTAATTTCTACATTGCT 360
||||| |||||||| ||||||||||||||||||| ||||||||| |||||||| |||| |
Sbjct 301 TTTCCGATTCTGACGCTTAAATATTGGAAGGGACCTCTTGTGACCAATTTCTATATTGTT 360
Query 361 CTCTTCAGTCTTGGCTATTGGTTCCTATTCGTTATAATCCTTTTTTCTATCTTTTTCTTC 420
|||||||||||||||||||||||||||||| ||||| |||| ||||||||| ||||||||
Sbjct 361 CTCTTCAGTCTTGGCTATTGGTTCCTATTCTTTATAGTCCTATTTTCTATCGTTTTCTTC 420
Query 421 TCTACAAAACTCGATTCCTTGGTAGCCAAATCTCACGCTTTATGGATTCTATTCGCAGTC 480
|||||||||||||||||||||| ||||||||||| |||||||| ||| |||| ||||||
Sbjct 421 TCTACAAAACTCGATTCCTTGGCAGCCAAATCTCGCGCTTTATTCATTGTATTTGCAGTC 480
Query 481 TTTGAGTCTTACTTAGCTATAGTTTGGAACTTATCTATGGTCATATCGATACTCGAGGAA 540
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 481 TTTGAGTCTTACTTAGCTATCGTTTGGAACTTATCTATGGTCATATCGATACTCGAGGAT 540
Query 541 ACTTATGGGATCCAAGCTTTGGGGAAAGCTGCAAAGATTGTTAAAGGGATGAAGCCAAAA 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 ACTTATGGGATCCAAGCTTTGGGGAAAGCTGCAAAGATTGTTAAAGGGATGAAGCCAAAA 600
Query 601 CTATTCCTCTTGAATCTTTTCTTTGGTTTATTGTCATTTGGATTAGTTCAAATCTTGCGA 660
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 601 CTATTCCTCTTGAATCTTTTCTTTGGGTTATTGTCATTTGGATTAGTTCAAATCTTGCGG 660
Query 661 CTGATCGATTGGAGTAGTTCATTCTCGGTTACCTTAACCACCGGTTTGGTCCTTGTGAGT 720
||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 661 CTGGTCGATTGGAGTAGTTCATTCTCGGTTACCTTAACCACCGGTTTGGTCCTTATGAGT 720
Query 721 TCGGTCTTTGTGGTGAGGATGTTTCAGCTTGTGACTTACACCGTTGCCTATTTCCAATGT 780
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 721 TCGGTCTTTGTGGTGAGGATGTTTCAGCTTGTGACTTACACCGTTGCTTATTTCCAATGT 780
Query 781 AAGAGCCTGCAAGGCAAAGACGTTGACTCGCTGAGGGATGTGGAATATACGAAATTGTCC 840
|||||||||||||| | | | | |||||||||||||||| |||||||||||||||||
Sbjct 781 AAGAGCCTGCAAGG-ACA-A-G---ACTCGCTGAGGGATGTTGAATATACGAAATTGTCA 834
Query 841 TCCACTACTATCATGGGAGGATTGCCTTGA 870
||||||||| ||||||||||||||||||||
Sbjct 835 TCCACTACTCTCATGGGAGGATTGCCTTGA 864
> AT2G18670.1 | Symbols: | RING/U-box superfamily protein | chr2:8093220-8095729
FORWARD LENGTH=2072
Length=2072
Score = 1341 bits (726), Expect = 0.0
Identities = 823/870 (95%), Gaps = 6/870 (1%)
Strand=Plus/Plus
Query 1 ATGTTCTCAGTCTTGGCATTCCCTCTCTTACTCAATTGTTTAGTTTACTTGTTCAAGGCC 60
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1123 ATGTTCTCAGTCTTGGTATTCCCTCTCTTACTCAATTGTTTAGTTTACTTGTTCAACGCC 1182
Query 61 ATTGCCATCAAACCCGAGATAACAAACTTGATCCTTGAATCAAGTTTGTTACCTATGACA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1183 ATTGCCATCAAACCCGAGATAACAAACTTGATCCTTGAATCAAGTTTGTTACCTATGACA 1242
Query 121 GATCCAAACACCCCGGAATATGCAGCCCATCTTATGAGAGTCTTTGCAGATTTTCGTCAG 180
||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||| |||
Sbjct 1243 GATCCAAACACCCCGGAATTTGCTGCCCATCTTATGAGAGTCTTTGTAGATTTTCGCCAG 1302
Query 181 TTTGTTAGTTCTTTATACATCATCTTGGCCGTCTCCTCCATCATCAACCTCTTATCCACT 240
||||| | ||||||||||||| || | ||||||||||||||||||||||| |||||||||
Sbjct 1303 TTTGTCAATTCTTTATACATCTTCATCGCCGTCTCCTCCATCATCAACCTTTTATCCACT 1362
Query 241 CTTGTCATCGTTCACGCATCGGCTCTTACTCATAAAGATGATAGCTTCGAGATCAAAGAT 300
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1363 CTTGTCATGGTTCATGCATCGGCTCTTACTCATAAAGATGATAGCTTCGAGATCAAAGAT 1422
Query 301 TTTCCTATTCTGACCCTTAAATATTGGAAGGGACTTCTTGTGACTAATTTCTACATTGCT 360
||||| |||||||| ||||||||||||||||||| ||||||||| |||||||| |||| |
Sbjct 1423 TTTCCGATTCTGACGCTTAAATATTGGAAGGGACCTCTTGTGACCAATTTCTATATTGTT 1482
Query 361 CTCTTCAGTCTTGGCTATTGGTTCCTATTCGTTATAATCCTTTTTTCTATCTTTTTCTTC 420
|||||||||||||||||||||||||||||| ||||| |||| ||||||||| ||||||||
Sbjct 1483 CTCTTCAGTCTTGGCTATTGGTTCCTATTCTTTATAGTCCTATTTTCTATCGTTTTCTTC 1542
Query 421 TCTACAAAACTCGATTCCTTGGTAGCCAAATCTCACGCTTTATGGATTCTATTCGCAGTC 480
|||||||||||||||||||||| ||||||||||| |||||||| ||| |||| ||||||
Sbjct 1543 TCTACAAAACTCGATTCCTTGGCAGCCAAATCTCGCGCTTTATTCATTGTATTTGCAGTC 1602
Query 481 TTTGAGTCTTACTTAGCTATAGTTTGGAACTTATCTATGGTCATATCGATACTCGAGGAA 540
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1603 TTTGAGTCTTACTTAGCTATCGTTTGGAACTTATCTATGGTCATATCGATACTCGAGGAT 1662
Query 541 ACTTATGGGATCCAAGCTTTGGGGAAAGCTGCAAAGATTGTTAAAGGGATGAAGCCAAAA 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1663 ACTTATGGGATCCAAGCTTTGGGGAAAGCTGCAAAGATTGTTAAAGGGATGAAGCCAAAA 1722
Query 601 CTATTCCTCTTGAATCTTTTCTTTGGTTTATTGTCATTTGGATTAGTTCAAATCTTGCGA 660
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1723 CTATTCCTCTTGAATCTTTTCTTTGGGTTATTGTCATTTGGATTAGTTCAAATCTTGCGG 1782
Query 661 CTGATCGATTGGAGTAGTTCATTCTCGGTTACCTTAACCACCGGTTTGGTCCTTGTGAGT 720
||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1783 CTGGTCGATTGGAGTAGTTCATTCTCGGTTACCTTAACCACCGGTTTGGTCCTTATGAGT 1842
Query 721 TCGGTCTTTGTGGTGAGGATGTTTCAGCTTGTGACTTACACCGTTGCCTATTTCCAATGT 780
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1843 TCGGTCTTTGTGGTGAGGATGTTTCAGCTTGTGACTTACACCGTTGCTTATTTCCAATGT 1902
Query 781 AAGAGCCTGCAAGGCAAAGACGTTGACTCGCTGAGGGATGTGGAATATACGAAATTGTCC 840
|||||||||||||| | | | | |||||||||||||||| |||||||||||||||||
Sbjct 1903 AAGAGCCTGCAAGG-ACA-A-G---ACTCGCTGAGGGATGTTGAATATACGAAATTGTCA 1956
Query 841 TCCACTACTATCATGGGAGGATTGCCTTGA 870
||||||||| ||||||||||||||||||||
Sbjct 1957 TCCACTACTCTCATGGGAGGATTGCCTTGA 1986
> AT2G18690.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: membrane; EXPRESSED IN: 17 plant structures;
EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s:
Protein of unknown function DUF975 (InterPro:IPR010380);
BEST Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT2G18680.1); Has 213 Blast hits to 211 proteins in
20 species: Archae - 0; Bacteria - 8; Metazoa - 0; Fungi - 0;
Plants - 205; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink). | chr2:8097420-8098827 FORWARD LENGTH=1408
Length=1408
Score = 848 bits (459), Expect = 0.0
Identities = 755/895 (84%), Gaps = 32/895 (4%)
Strand=Plus/Plus
Query 1 ATGTTCTCAGTCTTGGCATTCCCTCTCTTACTCAATTGTTTAGTTTACTTGTTCAAGGCC 60
|||||||||||||||| ||||||||||||||||||||||||||||||||| || || |
Sbjct 321 ATGTTCTCAGTCTTGGTATTCCCTCTCTTACTCAATTGTTTAGTTTACTTCTTGAACATC 380
Query 61 ATTGCCATCAAACCCGAGATAACAAACTTGATCCTTGAATCAAGTTTGTTACCTAT-GAC 119
||| |||| ||| ||||| |||||||||||||||||| |||||||||| ||| | |||
Sbjct 381 TTTGTCATCGTACCGGAGATCACAAACTTGATCCTTGAAGCAAGTTTGTTGCCT-TCGAC 439
Query 120 AGATCCAAACACCCCGGAATATGCAGCCCATCTTATGAGAGTCTTTGCAGATTTTCGTCA 179
|||||||| | |||||||||| ||||||| ||||||||||||||| |||||||||| ||
Sbjct 440 AGATCCAACCTCCCCGGAATACGCAGCCCGCCTTATGAGAGTCTTTACAGATTTTCGCCA 499
Query 180 GTTTGTTAGTTCTTTATACATCATCTTGGCCGTCTCCTCCATCATCAACCTCTTATCCAC 239
||||| |||||| |||||| || ||| ||||||||||||||||||||||| ||
Sbjct 500 ATTTGTGGGTTCTTCATACATTTTCGCGGCTGTCTCCTCCATCATCAACCTCTTTTCTGT 559
Query 240 TCTTGTCATCGTTCACGCATCGGCTCTTACTCATAAAGATGATAGCTTCGAGATCAAAGA 299
||| |||||||| |||||||||||| |||||| ||||||||| | |||| | ||||||||
Sbjct 560 TCTAGTCATCGTCCACGCATCGGCTATTACTCTTAAAGATGAAAACTTCAATATCAAAGA 619
Query 300 TTTTCCTATTCTGACCCTTAAATATTGGAAGGGACTTCTTGTGACTA-ATTTCTACATTG 358
||||||| |||||| |||||||| ||||||||||| ||||||||| | ||||||||||||
Sbjct 620 TTTTCCTGTTCTGAGCCTTAAATCTTGGAAGGGACCTCTTGTGAC-ATATTTCTACATTG 678
Query 359 CTCTCTTCAGTCTTGGCTATTGG-TTCCTATTCGTTATAATCCTTTTTTCTATCTTTTTC 417
|||| ||||||||||||| |||| ||||| ||| |||||||||||| | ||||| ||||
Sbjct 679 CTCTTTTCAGTCTTGGCT-TTGGCTTCCTCTTCTTTATAATCCTTTGTCCTATCCTTTTG 737
Query 418 TTCTCTACAAAACT-CGATTCCTTGG----TA---G--CCAAATC--TC-A--C----GC 458
||||||| |||| | || |||| ||| || | | | || | | |
Sbjct 738 TTCTCTATAAAA-TCCGGTTCCGTGGAAAATATCGGTTTCTTGGCGGTCGAGGCTGGTGT 796
Query 459 TTTATGGATTCTATTCGCAGTCTTTGAGTCTTACTTAGCTATAGT-TTGGAACTTATCTA 517
||||| |||| ||||| | |||| | |||| || || ||||| | ||||||||||||||
Sbjct 797 TTTATTGATTATATTCACCGTCTCTCAGTCCTATTTTGCTAT-CTATTGGAACTTATCTA 855
Query 518 TGGTCATATCGATACTCGAGGAAACTTATGGGATCCAAGCTTTGGGGAAAGCTGCAAAGA 577
|||||||||||||||| ||||||| ||||||| ||||||||||||||||||| |||||||
Sbjct 856 TGGTCATATCGATACTAGAGGAAAGTTATGGGTTCCAAGCTTTGGGGAAAGCAGCAAAGA 915
Query 578 TTGTTAAAGGGATGAAGCCAAAACTATTCCTCTTGAATCTTTTCTTTGGTTTATTGTCAT 637
||||||||||||||||| ||||||| || ||||||||||||||||||||||||||| |||
Sbjct 916 TTGTTAAAGGGATGAAGACAAAACTGTTTCTCTTGAATCTTTTCTTTGGTTTATTGGCAT 975
Query 638 TTGGATTAGTTCAAATCTTGCGA-CTGATCGAT-TGGAGTAGTTCATTCTCGGTTACCTT 695
||||||| ||||||||||| | |||||| || ||| | || || || ||||||||||
Sbjct 976 CCGGATTAGCTCAAATCTTGC-AGCTGATCAATATGG-GAAGATCGTTAGCGGTTACCTT 1033
Query 696 AACCACCGGTTTGGTCCTTGTGAGTTCGGTCTTTGTGGTGAGGATGTTTCAGCTTGTGAC 755
|||||| ||||| ||||||||| ||| |||||||| ||||||||||||||||||||||||
Sbjct 1034 AACCACAGGTTTTGTCCTTGTGTGTTTGGTCTTTGCGGTGAGGATGTTTCAGCTTGTGAC 1093
Query 756 TTACACCGTTGCCTATTTCCAATGTAAGAGCCTGCAAGGCAAAGACGTTGACTCGCTGAG 815
|||||||||||| |||||||||||||| ||||| ||||||| ||||||||| ||||| ||
Sbjct 1094 TTACACCGTTGCATATTTCCAATGTAAAAGCCTCCAAGGCAGAGACGTTGAGTCGCTCAG 1153
Query 816 GGATGTGGAATATACGAAATTGTCCTCCACTACTATCATGGGAGGATTGCCTTGA 870
|||||||||||||| | |||||| ||||||||| ||| || | |||||||||||
Sbjct 1154 GGATGTGGAATATATGGCATTGTCTTCCACTACTCTCACGGAATGATTGCCTTGA 1208
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42447854215
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5