BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480771
Length=1338
Score E
Sequences producing significant alignments: (Bits) Value
AT2G18690.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1810 0.0
AT2G18670.1 | Symbols: | RING/U-box superfamily protein | chr2... 1070 0.0
AT2G18680.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 839 0.0
> AT2G18690.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: membrane; EXPRESSED IN: 17 plant structures;
EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s:
Protein of unknown function DUF975 (InterPro:IPR010380);
BEST Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT2G18680.1); Has 213 Blast hits to 211 proteins in
20 species: Archae - 0; Bacteria - 8; Metazoa - 0; Fungi - 0;
Plants - 205; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink). | chr2:8097420-8098827 FORWARD LENGTH=1408
Length=1408
Score = 1810 bits (980), Expect = 0.0
Identities = 1198/1297 (92%), Gaps = 40/1297 (3%)
Strand=Plus/Plus
Query 71 TGGTTAGTAGTATATAAGCACTAGGCAGATGGGTTTGATCTTATAAACCCTCACTACCAT 130
||||||||||||||||||| |||| ||||| ||||||||||||||||||||| | |||||
Sbjct 120 TGGTTAGTAGTATATAAGCCCTAGACAGATAGGTTTGATCTTATAAACCCTCGCCACCAT 179
Query 131 TACCAAAAACCAATAAGCCAAGAGCTTTTGTCATTTTTCTTTTTGAAAGCCATGGCTCGA 190
||||||||||||||||||||||||||||| ||||||||||| |||||| |||||||||||
Sbjct 180 TACCAAAAACCAATAAGCCAAGAGCTTTTCTCATTTTTCTTCTTGAAACCCATGGCTCGA 239
Query 191 TTTTCGTTCTTGAATGTTTTAAAGGATGTTGTGGCTATTCTAAATGAATCCCGCAAACTA 250
||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TTTTCCTTCTTGAATGTTGTAAAGGATGTTGTGGCTATTCTAAATGAATCCCGCAAACTG 299
Query 251 TTTCTCAAGAACAAAAAGTTGATGTTCTCAGTCTTGGTATTCCCTCTCTTACTCAATTGT 310
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TTTCTCAAGAACAAAAAGTTGATGTTCTCAGTCTTGGTATTCCCTCTCTTACTCAATTGT 359
Query 311 TTAGTTTACTTCTTTAACCTCTTTGTCATCGTACCGGAGATCACAAACTTGATCCTTGAA 370
|||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 360 TTAGTTTACTTCTTGAACATCTTTGTCATCGTACCGGAGATCACAAACTTGATCCTTGAA 419
Query 371 TCAAGTTTGTTGCCTACGACAGATCCAACCTCCCCGGAATACGCAGCCCGTCTTATGAGA 430
|||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 420 GCAAGTTTGTTGCCTTCGACAGATCCAACCTCCCCGGAATACGCAGCCCGCCTTATGAGA 479
Query 431 GTCTTTGCAGATTTTCGTCAATTTGTGGGT-CATTCATACATTTTCACGGCCGTCTCCTC 489
|||||| |||||||||| |||||||||||| | ||||||||||||| |||| ||||||||
Sbjct 480 GTCTTTACAGATTTTCGCCAATTTGTGGGTTC-TTCATACATTTTCGCGGCTGTCTCCTC 538
Query 490 CATCATCAACCTCTTTTCTGTTCTAGTCATCGTCCACGCATCGGCTCTTACTTTTAAAGA 549
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 539 CATCATCAACCTCTTTTCTGTTCTAGTCATCGTCCACGCATCGGCTATTACTCTTAAAGA 598
Query 550 TGAAAAATTCAAGATCAAAGATTTTCCTGTTCTGAGCCTTAAATCTTGGAAGGGACCTCT 609
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 TGAAAACTTCAATATCAAAGATTTTCCTGTTCTGAGCCTTAAATCTTGGAAGGGACCTCT 658
Query 610 TGTGACGTATTTCTACATTGCTCTTTTCAGTCTTGGCTTTGGGTTCCTCTTCTTTATAAT 669
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 659 TGTGACATATTTCTACATTGCTCTTTTCAGTCTTGGCTTTGGCTTCCTCTTCTTTATAAT 718
Query 670 CCTCTGTCCTGTCCTTTTGTTCTCTACAAAATTCGGTTCCGTGGCAAATATCGGTTTCTT 729
||| |||||| ||||||||||||||| ||||| ||||||||||| |||||||||||||||
Sbjct 719 CCTTTGTCCTATCCTTTTGTTCTCTATAAAATCCGGTTCCGTGGAAAATATCGGTTTCTT 778
Query 730 GGCAGTCGAGGCTGGTGCTTTATTGATTATATTCGCTGTCTCTCAGTCCTATTTCGCTAT 789
||| ||||||||||||| |||||||||||||||| | ||||||||||||||||| |||||
Sbjct 779 GGCGGTCGAGGCTGGTGTTTTATTGATTATATTCACCGTCTCTCAGTCCTATTTTGCTAT 838
Query 790 CTATTGGAACTTATCTATGGTCATATCGATACTAGAGGAAACTTATGGGTTTCAAGCTTT 849
||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 839 CTATTGGAACTTATCTATGGTCATATCGATACTAGAGGAAAGTTATGGGTTCCAAGCTTT 898
Query 850 GGGGAAAGCTGCAAAGATTGTTAAAGGGATGAAGACAAAACTGTTTCTCTTGAATCTTTT 909
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 GGGGAAAGCAGCAAAGATTGTTAAAGGGATGAAGACAAAACTGTTTCTCTTGAATCTTTT 958
Query 910 CTTTAGTTTATTGGCATTCGGATTAGCTCAAATCTTGCAGCTCATCAATTTGGGAAGATC 969
|||| |||||||||||| |||||||||||||||||||||||| |||||| ||||||||||
Sbjct 959 CTTTGGTTTATTGGCATCCGGATTAGCTCAAATCTTGCAGCTGATCAATATGGGAAGATC 1018
Query 970 GTTCA-CGGTTACCTTAACCACCGGTTTGGTCCTTGTGTGTTTGGTCTTTGCGGTGAGGA 1028
||| | |||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 1019 GTT-AGCGGTTACCTTAACCACAGGTTTTGTCCTTGTGTGTTTGGTCTTTGCGGTGAGGA 1077
Query 1029 TGTTTCAGCTTGTGACTTACACCGTTGCATATTTCCAATGTAAGAGCCTCCAAGGCAAAG 1088
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 1078 TGTTTCAGCTTGTGACTTACACCGTTGCATATTTCCAATGTAAAAGCCTCCAAGGCAGAG 1137
Query 1089 ACGTTGAGTCGCTCAGGGATGTGGAATATATGACATTGTCTTCCACTACTACTCTCATGG 1148
|||||||||||||||||||||||||||||||| ||||||||||||||||| ||| | ||
Sbjct 1138 ACGTTGAGTCGCTCAGGGATGTGGAATATATGGCATTGTCTTCCACTACT-CTCAC--GG 1194
Query 1149 GATGATTGCCTTGATATTTCAAGAGAAG---ATAT-T--TA--AT-------CGGTGGAT 1193
||||||||||||||||||||||||||| |||| | || || | ||||||
Sbjct 1195 AATGATTGCCTTGATATTTCAAGAGAAGGGCATATATGATATGATATTTAATCTGTGGAT 1254
Query 1194 TGTT-GTTTGT---A---TAT-GTTGAAGTTCACCATGGATTTTGGTAAAGTGTTTTGAA 1245
|||| |||||| | ||| |||||| |||||||||||||| |||||||| |||||||
Sbjct 1255 TGTTTGTTTGTTTGAGAATATTGTTGAACTTCACCATGGATTT-GGTAAAGTATTTTGAA 1313
Query 1246 TAATCAAAAGTTTGGTTAAATATATGTTTTGtt--tt-ttt-AAGGTTTGGTTGAATATA 1301
|||||||| |||| |||| |||||||||||||| || ||| ||||||||||||||||||
Sbjct 1314 TAATCAAAGGTTTTGTTACATATATGTTTTGTTAATTGTTTTAAGGTTTGGTTGAATATA 1373
Query 1302 TATGGTTTGGCTATATATATAGACAAGATATTTTTGC 1338
| |||||| |||||||| |||| |||| ||||||
Sbjct 1374 TTTGGTTT---TATATATA--GACATGATAGTTTTGC 1405
> AT2G18670.1 | Symbols: | RING/U-box superfamily protein | chr2:8093220-8095729
FORWARD LENGTH=2072
Length=2072
Score = 1070 bits (579), Expect = 0.0
Identities = 996/1188 (84%), Gaps = 66/1188 (6%)
Strand=Plus/Plus
Query 77 GTAGTATATAAGCACTAGGCAGAT-GG-GTTTGATCTTATAAACCCTCACTACCATTACC 134
||| ||||||||||||| |||||| || |||||||| |||||||||||||||||||||||
Sbjct 926 GTAATATATAAGCACTAAGCAGATGGGCGTTTGATCATATAAACCCTCACTACCATTACC 985
Query 135 AAAAACCAATAAGCCAAGAGC---TTTTGTCATTTTTCTTTTTGAAAGCCATGGCTCGAT 191
||||| |||| |||||||||| |||| ||| ||||||||||||||||||||| ||| |
Sbjct 986 AAAAAGCAAT-AGCCAAGAGCTTTTTTTTTCA-TTTTCTTTTTGAAAGCCATGGATCGGT 1043
Query 192 TTTCGTTCTTGAATGTTTTAAAGGATGTTGTGGCTATTCTAAATGAATCCCGCAAACTAT 251
||||||||||||||||| ||| ||| |||| || ||||||||||||||||||||||||
Sbjct 1044 TTTCGTTCTTGAATGTTATAATGGAGGTTGCGGGTATTCTAAATGAATCCCGCAAACT-C 1102
Query 252 TTCTCAAGAACAAAAAGTTGATGTTCTCAGTCTTGGTATTCCCTCTCTTACTCAATTGTT 311
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1103 TCCTCAAGAACAAAAAGTTGATGTTCTCAGTCTTGGTATTCCCTCTCTTACTCAATTGTT 1162
Query 312 TAGTTTACTTCTTTAAC-CTCTTTGTCATCGTACCGGAGATCACAAACTTGATCCTTGAA 370
|||||||||| || ||| | | ||| |||| ||| ||||| ||||||||||||||||||
Sbjct 1163 TAGTTTACTTGTTCAACGC-CATTGCCATCAAACCCGAGATAACAAACTTGATCCTTGAA 1221
Query 371 TCAAGTTTGTTGCCTACGACAGATCCAACCTCCCCGGAATACGCAGCCCGTCTTATGAGA 430
||||||||||| |||| ||||||||||| | ||||||||| || |||| ||||||||||
Sbjct 1222 TCAAGTTTGTTACCTATGACAGATCCAAACACCCCGGAATTTGCTGCCCATCTTATGAGA 1281
Query 431 GTCTTTGCAGATTTTCGTCAATTTGTGGGT-CATTCATACATTTTCA-CGGCCGTCTCCT 488
||||||| ||||||||| || ||||| | | || |||||| |||| || |||||||||
Sbjct 1282 GTCTTTGTAGATTTTCGCCAGTTTGTCAATTCTTT-ATACATCTTCATCG-CCGTCTCCT 1339
Query 489 CCATCATCAACCTCTTT-TCTGTTCTAGTCATCGTCCACGCATCGGCTCTTACTTTTAAA 547
||||||||||||| ||| || ||| ||||| || || ||||||||||||||| ||||
Sbjct 1340 CCATCATCAACCT-TTTATCCACTCTTGTCATGGTTCATGCATCGGCTCTTACTCATAAA 1398
Query 548 GATGAAAAATTCAAGATCAAAGATTTTCCTG-TTCTGA-GCCTTAAATCTTGGAAGGGAC 605
||||| | ||| |||||||||||||||| | |||||| || |||||| |||||||||||
Sbjct 1399 GATGATAGCTTCGAGATCAAAGATTTTCC-GATTCTGACGC-TTAAATATTGGAAGGGAC 1456
Query 606 CTCTTGTGACGTATTTCTACATTGCTCTTTTCAGTCTTGGCT-TTGGGTTCCTCTTCTTT 664
|||||||||| ||||||| |||| ||| ||||||||||||| |||| ||||| ||||||
Sbjct 1457 CTCTTGTGACCAATTTCTATATTGTTCTCTTCAGTCTTGGCTATTGG-TTCCTATTCTTT 1515
Query 665 ATAATCCTCTGTCCTGTCCTTTTGTTCTCTACAAAATTCGGTTCCGTGGCAAATATCGGT 724
||| |||| | | || || |||| |||||||||||| | | | | | | ||
Sbjct 1516 ATAGTCCTATTTTCTATCGTTTTCTTCTCTACAAAA--C--T-C-G----A--T-TC--- 1559
Query 725 TTCTTGGCAGTCGAGGCTGGTGCTTTATTGATTATATTCGCTGTCTCTCAGTCCTATTTC 784
|||||||| | | || | |||||||| ||| |||| || |||| | |||| || ||
Sbjct 1560 --CTTGGCAGCCAAATCTCGCGCTTTATTCATTGTATTTGCAGTCTTTGAGTCTTACTTA 1617
Query 785 GCTATC-TATTGGAACTTATCTATGGTCATATCGATACTAGAGGAAACTTATGGGTTTCA 843
|||||| | |||||||||||||||||||||||||||||| ||||| ||||||||| | ||
Sbjct 1618 GCTATCGT-TTGGAACTTATCTATGGTCATATCGATACTCGAGGATACTTATGGGATCCA 1676
Query 844 AGCTTTGGGGAAAGCTGCAAAGATTGTTAAAGGGATGAAGACAAAACTGTTTCTCTTGAA 903
|||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||
Sbjct 1677 AGCTTTGGGGAAAGCTGCAAAGATTGTTAAAGGGATGAAGCCAAAACTATTCCTCTTGAA 1736
Query 904 TCTTTTCTTTAGTTTATTGGCATTCGGATTAGCTCAAATCTTGCAGCTCATCAATTTGG- 962
|||||||||| | |||||| |||| ||||||| ||||||||||| ||| || ||| ||
Sbjct 1737 TCTTTTCTTTGGGTTATTGTCATTTGGATTAGTTCAAATCTTGCGGCTGGTCGATT-GGA 1795
Query 963 GAAGATCGTTCACGGTTACCTTAACCACCGGTTTGGTCCTTGTGTGTTTGGTCTTTGCGG 1022
| || || ||| ||||||||||||||||||||||||||||| || ||| |||||||| ||
Sbjct 1796 GTAGTTCATTCTCGGTTACCTTAACCACCGGTTTGGTCCTTATGAGTTCGGTCTTTGTGG 1855
Query 1023 TGAGGATGTTTCAGCTTGTGACTTACACCGTTGCATATTTCCAATGTAAGAGCCTCCAAG 1082
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 1856 TGAGGATGTTTCAGCTTGTGACTTACACCGTTGCTTATTTCCAATGTAAGAGCCTGCAAG 1915
Query 1083 G-CAAAGACGTTGAGTCGCTCAGGGATGTGGAATATATGACATTGTCTTCCACTACTACT 1141
| ||| ||| | |||| |||||||| ||||||| || |||||| ||||||||| ||
Sbjct 1916 GACAA-GAC-T-----CGCTGAGGGATGTTGAATATACGAAATTGTCATCCACTACT-CT 1967
Query 1142 CTCATGGGATGATTGCCTTGAT-ATTTCAAG-AGAAGATATTTA-AT-CGGTGGATTGTT 1197
| |||||| |||||||||||| | || | | || | || | || || ||| | |||
Sbjct 1968 C--ATGGGAGGATTGCCTTGATTAGG-CATGTATAATACATAAATATACG-TGGGTCGTT 2023
Query 1198 -GTTTGT-AT-A-TGTTGAAGTTCACCATGGATTTTGGTAAAGTGTTT 1241
|||| | | | |||| ||||||||||||||||| |||||||| |||
Sbjct 2024 TGTTTCTTAAGAATGTTAAAGTTCACCATGGATTT-GGTAAAGTATTT 2070
> AT2G18680.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; EXPRESSED IN: male gametophyte,
pollen tube; EXPRESSED DURING: L mature pollen stage,
M germinated pollen stage; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT2G18690.1); Has 30201
Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria
- 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037;
Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
| chr2:8094780-8095779 FORWARD LENGTH=1000
Length=1000
Score = 839 bits (454), Expect = 0.0
Identities = 832/1006 (83%), Gaps = 60/1006 (6%)
Strand=Plus/Plus
Query 272 ATGTTCTCAGTCTTGGTATTCCCTCTCTTACTCAATTGTTTAGTTTACTTCTTTAAC-CT 330
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |
Sbjct 1 ATGTTCTCAGTCTTGGTATTCCCTCTCTTACTCAATTGTTTAGTTTACTTGTTCAACGC- 59
Query 331 CTTTGTCATCGTACCGGAGATCACAAACTTGATCCTTGAATCAAGTTTGTTGCCTACGAC 390
| ||| |||| ||| ||||| ||||||||||||||||||||||||||||| |||| |||
Sbjct 60 CATTGCCATCAAACCCGAGATAACAAACTTGATCCTTGAATCAAGTTTGTTACCTATGAC 119
Query 391 AGATCCAACCTCCCCGGAATACGCAGCCCGTCTTATGAGAGTCTTTGCAGATTTTCGTCA 450
|||||||| | ||||||||| || |||| ||||||||||||||||| ||||||||| ||
Sbjct 120 AGATCCAAACACCCCGGAATTTGCTGCCCATCTTATGAGAGTCTTTGTAGATTTTCGCCA 179
Query 451 ATTTGTGGGT-CATTCATACATTTTCA-CGGCCGTCTCCTCCATCATCAACCTCTTT-TC 507
||||| | | || |||||| |||| || |||||||||||||||||||||| ||| ||
Sbjct 180 GTTTGTCAATTCTTT-ATACATCTTCATCG-CCGTCTCCTCCATCATCAACCT-TTTATC 236
Query 508 TGTTCTAGTCATCGTCCACGCATCGGCTCTTACTTTTAAAGATGAAAAATTCAAGATCAA 567
||| ||||| || || ||||||||||||||| ||||||||| | ||| |||||||
Sbjct 237 CACTCTTGTCATGGTTCATGCATCGGCTCTTACTCATAAAGATGATAGCTTCGAGATCAA 296
Query 568 AGATTTTCCTG-TTCTGA-GCCTTAAATCTTGGAAGGGACCTCTTGTGACGTATTTCTAC 625
||||||||| | |||||| || |||||| ||||||||||||||||||||| |||||||
Sbjct 297 AGATTTTCC-GATTCTGACGC-TTAAATATTGGAAGGGACCTCTTGTGACCAATTTCTAT 354
Query 626 ATTGCTCTTTTCAGTCTTGGCT-TTGGGTTCCTCTTCTTTATAATCCTCTGTCCTGTCCT 684
|||| ||| ||||||||||||| |||| ||||| ||||||||| |||| | | || || |
Sbjct 355 ATTGTTCTCTTCAGTCTTGGCTATTGG-TTCCTATTCTTTATAGTCCTATTTTCTATCGT 413
Query 685 TTTGTTCTCTACAAAATTCGGTTCCGTGGCAAATATCGGTTTCTTGGCAGTCGAGGCTGG 744
||| |||||||||||| | | | | | | || |||||||| | | || |
Sbjct 414 TTTCTTCTCTACAAAA--C--T-C-G----A--T-TC-----CTTGGCAGCCAAATCTCG 455
Query 745 TGCTTTATTGATTATATTCGCTGTCTCTCAGTCCTATTTCGCTATC-TATTGGAACTTAT 803
|||||||| ||| |||| || |||| | |||| || || |||||| | |||||||||||
Sbjct 456 CGCTTTATTCATTGTATTTGCAGTCTTTGAGTCTTACTTAGCTATCGT-TTGGAACTTAT 514
Query 804 CTATGGTCATATCGATACTAGAGGAAACTTATGGGTTTCAAGCTTTGGGGAAAGCTGCAA 863
||||||||||||||||||| ||||| ||||||||| | ||||||||||||||||||||||
Sbjct 515 CTATGGTCATATCGATACTCGAGGATACTTATGGGATCCAAGCTTTGGGGAAAGCTGCAA 574
Query 864 AGATTGTTAAAGGGATGAAGACAAAACTGTTTCTCTTGAATCTTTTCTTTAGTTTATTGG 923
|||||||||||||||||||| ||||||| || |||||||||||||||||| | ||||||
Sbjct 575 AGATTGTTAAAGGGATGAAGCCAAAACTATTCCTCTTGAATCTTTTCTTTGGGTTATTGT 634
Query 924 CATTCGGATTAGCTCAAATCTTGCAGCTCATCAATTTGG-GAAGATCGTTCACGGTTACC 982
|||| ||||||| ||||||||||| ||| || ||| || | || || ||| ||||||||
Sbjct 635 CATTTGGATTAGTTCAAATCTTGCGGCTGGTCGATT-GGAGTAGTTCATTCTCGGTTACC 693
Query 983 TTAACCACCGGTTTGGTCCTTGTGTGTTTGGTCTTTGCGGTGAGGATGTTTCAGCTTGTG 1042
||||||||||||||||||||| || ||| |||||||| ||||||||||||||||||||||
Sbjct 694 TTAACCACCGGTTTGGTCCTTATGAGTTCGGTCTTTGTGGTGAGGATGTTTCAGCTTGTG 753
Query 1043 ACTTACACCGTTGCATATTTCCAATGTAAGAGCCTCCAAGG-CAAAGACGTTGAGTCGCT 1101
|||||||||||||| |||||||||||||||||||| ||||| ||| ||| | ||||
Sbjct 754 ACTTACACCGTTGCTTATTTCCAATGTAAGAGCCTGCAAGGACAA-GAC-T-----CGCT 806
Query 1102 CAGGGATGTGGAATATATGACATTGTCTTCCACTACTACTCTCATGGGATGATTGCCTTG 1161
|||||||| ||||||| || |||||| ||||||||| ||| |||||| ||||||||||
Sbjct 807 GAGGGATGTTGAATATACGAAATTGTCATCCACTACT-CTC--ATGGGAGGATTGCCTTG 863
Query 1162 AT-ATTTCAAG-AGAAGATATTTA-AT-CGGTGGATTGTT-GTTTGT-AT-A-TGTTGAA 1213
|| | || | | || | || | || || ||| | ||| |||| | | | |||| ||
Sbjct 864 ATTAGG-CATGTATAATACATAAATATACG-TGGGTCGTTTGTTTCTTAAGAATGTTAAA 921
Query 1214 GTTCACCATGGATTTTGGTAAAGTGTTT-TGAATAATCAAAAGTTT 1258
||||||||||||||| |||||||| ||| | ||||||| || ||||
Sbjct 922 GTTCACCATGGATTT-GGTAAAGTATTTCT-AATAATCCAAGGTTT 965
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65863115040
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5