BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480774
Length=1836
Score E
Sequences producing significant alignments: (Bits) Value
AT2G18710.1 | Symbols: SCY1 | SECY homolog 1 | chr2:8112084-811... 2885 0.0
> AT2G18710.1 | Symbols: SCY1 | SECY homolog 1 | chr2:8112084-8114485
REVERSE LENGTH=1836
Length=1836
Score = 2885 bits (1562), Expect = 0.0
Identities = 1755/1845 (95%), Gaps = 25/1845 (1%)
Strand=Plus/Plus
Query 1 TCGTTGTTGTGGAGAAGGAGAAGAAGAAGGATAAGGATGATAACGGTAAGCGAAGTTTCC 60
|||||||||||||||| | | |||||||||||||||||||||||||||||||||||||||
Sbjct 1 TCGTTGTTGTGGAGAA-G-G-AGAAGAAGGATAAGGATGATAACGGTAAGCGAAGTTTCC 57
Query 61 TCTTACTCTTCTTCTTCTTCAAACTTCGCGTCTCTGTCTCGTCTCAACT-ACAAATCATC 119
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 58 TCTTACTCTTCTTCTTCTTCAAACTTCGCGTCTCTGTCTCGTCTCAA-TCACAAATCATC 116
Query 120 TTCGAGATTCCGAAGCTCTTCTCTTTATAGAGCAAG---CTTCTCTGTTTCGACAAAGAC 176
||||||||| ||||||||||||||||| | || ||| |||||||||||||||||||||
Sbjct 117 TTCGAGATTGCGAAGCTCTTCTCTTTACAAAGGAAGCTTCTTCTCTGTTTCGACAAAGAC 176
Query 177 C---AGGAACACTTGTAAAGCCAAATCATGGAATCTTGGTCTCGTTATCAACTCTAGAAG 233
| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 177 CAGGAGGAACACTTGTAAAGCCAAATCATGGAATCTCGGTCTTGTTATCAACTCTAGAAG 236
Query 234 CTCTGAGGCTTCGGTTTTTGATCCGTTGGGGATCAATCCAGATGAAACTTCTGGTTTAAG 293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 CTCTGAGGCTTCGGTTTTTGATCCGTTGGGGATCAATCCAGATGAAACTTCTGGTTTAAG 296
Query 294 TAGCATTTGGGAAAGCTTTGTTAGTCTTTTGTCTCCATCATATGAAAGCTCATCCGGTAG 353
||||||||||||||||||||| ||||||||||| ||||||| ||||||||| |||||||
Sbjct 297 TAGCATTTGGGAAAGCTTTGTGAGTCTTTTGTCACCATCATTTGAAAGCTCTTCCGGTAA 356
Query 354 CAAACGAGATAAGCCGTCTTCTGGTCGGGGCGTGGCAGCTGCTATTGAGGACAGTTCCAT 413
|| ||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 357 CAGGCGAGATAAGCCGTCTTCTGGTAGAGGCGTGGCAGCTGCTATTGAGGACAGTTCCAT 416
Query 414 TGATTTTGGAGATTTCTTCAAAGGGCCATTACCAGGGAAGTTTTTGAAGCTTCTTGGATT 473
|||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| ||
Sbjct 417 TGATTTTGGAGATTTCTTCAAAGGGCCATTGCCAGGGAAGTTTCTGAAGCTTCTTGGGTT 476
Query 474 TTTAGCTCTCTCTCGGCTTGGAATATATATACCACTCGGTGGTGTTAATCGAGAAGCTTT 533
|||||||||||||||||||||||| || ||||||||||| || |||||||||||||||||
Sbjct 477 TTTAGCTCTCTCTCGGCTTGGAATTTACATACCACTCGGCGGGGTTAATCGAGAAGCTTT 536
Query 534 TGTTGGAAATTTGGATCAGAATAGCATTTTGAGCACTTTAGATACATTTTCCGGTGGAGG 593
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 537 TGTTGGAAATTTGGATCAGAATAGCATTTTGAGCACTTTGGATACATTTTCTGGTGGAGG 596
Query 594 CATTGGTAGACTTGGTATATGTTCTCTTGGGATTGTTCCTTTCATCAACGCGCAGATTGT 653
||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 597 CATAGGTAGACTTGGTATATGTTCTCTCGGGATTGTTCCTTTCATCAACGCTCAGATTGT 656
Query 654 GTTTCAGCTTCTTGCTCAAGTCTATCCAAAGTTGCAAGATCTTCAGAAAAAAGAAGGTGA 713
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 GTTTCAGCTTCTTGCTCAAGTCTATCCAAAGTTGCAAGATCTTCAGAAAAAAGAAGGTGA 716
Query 714 AGCCGGTAGaaaaaaaaTTCTTCAGTACACTAGATATGCTTCAGTCGGTTTTGCAATAGT 773
||| ||||||||||| ||||||||||| ||||||||||||||||| |||||||| |||||
Sbjct 717 AGCTGGTAGAAAAAAGATTCTTCAGTATACTAGATATGCTTCAGTTGGTTTTGCGATAGT 776
Query 774 ACAAGCAATCGGACAAGTGTTTTACCTTCGTCCTTACGTTAATGACTTCAGCACGGAATG 833
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 ACAAGCAATCGGACAAGTGTTTTACCTTCGTCCTTACGTTAATGACTTCAGCACGGAATG 836
Query 834 GGTTATTTCTTCTGTTACGTTATTAACGCTTGGTTCTGTTCTCACTACATATATTGGAGA 893
|||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 837 GGTTGTTTCTTCTGTTACGTTGTTAACGCTTGGTTCTGTTCTCACTACATATATTGGAGA 896
Query 894 GAGAATCTCTGATCTTAAACTTGGAAATGGCACTTCCCTTTTAATCTTCACAAGTATCAT 953
||||||||||||||| ||||||||||||||||||||||| || || ||||||||||||||
Sbjct 897 GAGAATCTCTGATCTGAAACTTGGAAATGGCACTTCCCTATTGATTTTCACAAGTATCAT 956
Query 954 TTCTTACTTGCCTGCATCGTTCGGTAGAACAGCAGCAGAGGCCTTACAGGAAGGAAACTA 1013
||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct 957 CTCTTACTTGCCTGCATCATTCGGTAGAACAACAGCAGAGGCCTTACAGGAAGGAAACTA 1016
Query 1014 TAGTGGTCTTGCCACCATCGTTGTCTCATTTCTCCTCTTGGTACTCGGGATTGTGTATGT 1073
|| |||||||| ||||||||||| |||||||||||||||||||||||||| || |||||
Sbjct 1017 TACTGGTCTTGGAACCATCGTTGTTTCATTTCTCCTCTTGGTACTCGGGATAGTATATGT 1076
Query 1074 TCAGGAAGCAGAGAGGAAAATTCCACTCAATTATGCCTCGAGATACACCAGCAAAGCCGG 1133
|||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| ||
Sbjct 1077 TCAGGAAGCAGAGAGGAAAATTCCGCTCAATTATGCCTCGCGATACACCAGCAAAGCTGG 1136
Query 1134 CGGGCTTCAGAAATCTGCTTATCTTCCATTCAAGGTCAATAGTGCTGGAGTAATGCCTAT 1193
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1137 TGGGCTTCAGAAATCTGCTTATCTTCCATTCAAGGTCAATAGTGCGGGAGTAATGCCTAT 1196
Query 1194 CATATTCTCCACATCATCTCTTGCTCTTCCTGCTACTCTAGCACGATTTACCGGCATATC 1253
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1197 CATATTCTCCACATCATCTCTTGCTCTTCCTGCTACTTTAGCACGATTTACCGGCATATC 1256
Query 1254 TGCTCTGAAGAATGTTGCTTTTGCTTTAAACCCTGGAGGTTCTTTCTATCTTCCAACCAA 1313
|||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1257 TGCTTTGAAGAATGTTGCTTTTGCTTTAACCCCTGGAGGTTCTTTCTATCTTCCAACCAA 1316
Query 1314 TATACTTCTCATAGCTTTCTTCAACTACTACTACACTTTCTTGCAACTTGACCCGGACGA 1373
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1317 TATACTTCTCATAGCTTTCTTCAACTACTACTACACTTTCTTGCAACTTGACCCGGACGA 1376
Query 1374 TGTGAGTGAACAATTAAAACGCCAAGGTGCATCAATCCCTCTAGTCCGACCTGGTAAAAG 1433
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1377 CGTGAGTGAACAATTAAAACGCCAAGGTGCATCAATCCCTCTAGTCCGACCTGGTAAAAG 1436
Query 1434 CACTGCTCTCTTCATCAAAACAGTCCTTGGTCGAATATCGGTTCTTGGTTCTGCATTTCT 1493
||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||
Sbjct 1437 CACTGCTCTCTTCATCAAAACCGTCCTTGGCCGGATATCGGTTCTTGGTTCTGCATTTCT 1496
Query 1494 GGCTGTTCTAGCTGCTGGTCCCGCTGTAGTCGAACAGATCACTCACTTGACAGCATTCAG 1553
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1497 GGCTGTTCTAGCTGCTGGTCCTGCTGTAGTCGAACAGATCACTCACTTGACAGCATTCAG 1556
Query 1554 AGGATTTGCAGGCACTTCTGTTCTGATCCTTGTCGGGTGTGCGACAGATACTGCAAGAAA 1613
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1557 AGGATTTGCAGGCACTTCTGTTCTGATCCTTGTCGGGTGTGCGACAGATACTGCAAGAAA 1616
Query 1614 GGTTCAAGCAGAGATAATCTCGCAAAAGTACAAGAACATTGAATTTTACGAGCTTGACAA 1673
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1617 GGTTCAAGCAGAGATAATCTCGCAAAAGTACAAGAACATTGAGTTTTACGAGCTTGACAA 1676
Query 1674 GTATGATCCATGAACTGGTACCACCTTCTGTTTTACATATGATACC-ATCGAATCAAGTT 1732
|||||||||||||||||| ||| ||||||||||||||| ||||| ||| || ||||||
Sbjct 1677 GTATGATCCATGAACTGG-ACC---TTCTGTTTTACATATAATACCCATCAAACCAAGTT 1732
Query 1733 ACTGTGTTCTCTTGTCATAGATTCAAACTATGTAACAAATATTTTAA-CTTTGATTAGTA 1791
||||||||||||||||||||||| ||||||||| |||||| ||||||||||||
Sbjct 1733 ACTGTGTTCTCTTGTCATAGATT--------GTAACAAATGTTTTAAACTTTGATTAGTA 1784
Query 1792 TATAATGCACTTTTGTCATGAGCTTGCCAAAGGAAAGTGAAACCT 1836
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1785 TATAATGCACTTTTGTCATGAGCTTGCCAAAGGAAAGTGAAACCT 1829
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90862986450
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5