BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480795
Length=2724
Score E
Sequences producing significant alignments: (Bits) Value
AT2G16250.1 | Symbols: | Leucine-rich repeat protein kinase fa... 4145 0.0
AT2G16245.1 | Symbols: | other RNA | chr2:7039677-7040592 FORW... 405 1e-111
> AT2G16250.1 | Symbols: | Leucine-rich repeat protein kinase
family protein | chr2:7039682-7042933 REVERSE LENGTH=2748
Length=2748
Score = 4145 bits (2244), Expect = 0.0
Identities = 2589/2753 (94%), Gaps = 34/2753 (1%)
Strand=Plus/Plus
Query 1 ATGGTTGATCAAAGAAGAAGCGCATTGGGTTTTGTCTTCTTGATGTTGTGTTTGGTACTG 60
|||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 1 ATGGTTGATCAAAGAAGAAGCGCATTGGGTTTTGTCTTGTTGTTGTTGTGTTTGGTACTG 60
Query 61 ---TTCGACTCTGTTGTTGTTGGTCAAACACAGACTCGATTCAGTGAGAAACTCATTTTG 117
||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 61 TTCTTCGACTGTGTTGTTGTTGGTCAAACACAGAGTCGATTCAGTGAGAAACTCATTTTG 120
Query 118 CTTAATCTCAGGTCTTCTTTAGGGTTAAGAGGAACAGATTGGCCAATTAAAGGTGACCCT 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CTTAATCTCAGGTCTTCTTTAGGGTTAAGAGGAACAGATTGGCCAATTAAAGGTGACCCT 180
Query 178 TGTGTTGTTTGGAGAGGAATACAATGTGAGAATGGTAGTATCATTGGGATCAATATTTCT 237
||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 181 TGTGTTGATTGGAGAGGTATACAATGTGAGAATGGTAGTATCATTGGGATCAATATCTCT 240
Query 238 GGGTTTAGGAGAACAAGAATTGGTAAGCAAAACCCACAATTCGCTGTTGATCCTCTTCGT 297
|||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct 241 GGGTTTAGGAGAACAAGAATTGGTAAGCTAAACCCACAATTCTCTGTTGATCCTCTTCGT 300
Query 298 AATCTTACCCGTTTGTCGTATTTTAACGCGTCCGGGTTAGCGTTACCGGGGACTATACCT 357
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AATCTAACTCGTTTGTCGTATTTTAACGCGTCCGGGTTAGCGTTACCGGGGACTATACCT 360
Query 358 GAGTGGTTTGGTGTTAGTTTGTTGGCATTGCAAGTGTTGGATCTTAGTTCTTGCTCTGTT 417
|||||||||||||||||||||||||||||| |||| |||||||||||||| || ||||||
Sbjct 361 GAGTGGTTTGGTGTTAGTTTGTTGGCATTGGAAGTATTGGATCTTAGTTCGTGTTCTGTT 420
Query 418 AGTGGTGTTATTCCTTTTACTCTTGGTAATCTCACTAGTTTAAGGACTTTGAATCTGTCT 477
| |||||| |||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 421 AACGGTGTTGTTCCTTTTACTCTTGGTAATCTCACTAGTTTAAGAACTTTGAATCTGTCT 480
Query 478 CAGAACAGTCTTACAAGTTTAGTTCCTAGTAGTTTAGGACAGTTGTTGAATTTATCAGAG 537
|||||||||||||| |||||||||||||| ||||||||||||||||||||| ||||| ||
Sbjct 481 CAGAACAGTCTTACTAGTTTAGTTCCTAGCAGTTTAGGACAGTTGTTGAATCTATCACAG 540
Query 538 CTTGATCTCTCTAGGAATTCACTCACTGGAATTCTTCCTCAATCTTTTAGCTCTCTGAAG 597
||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||
Sbjct 541 CTTGATCTCTCTAGGAACTCATTCACTGGTGTTCTTCCTCAATCTTTTAGCTCTCTGAAG 600
Query 598 AATCTGTTGACTCTTGATGTTTCTTCCAATTACCTTACTGGACCTATCCCTCCTGGTTTA 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 AATCTGTTGACTCTTGATGTTTCTTCCAATTACCTTACTGGACCTATCCCTCCTGGTTTA 660
Query 658 GGAACGTTATCGAAGCTTCTTCATTTGAATTTTTCAAGCAATAGTTTCTCGTCTCCGATT 717
||| ||||||| |||||| | ||| |||| ||||||||||||||||||||||||||||||
Sbjct 661 GGAGCGTTATCAAAGCTTATCCATCTGAACTTTTCAAGCAATAGTTTCTCGTCTCCGATT 720
Query 718 CCTCCAGAGCTCGGTGATCTTGTCAATTTAGTTGACTTTGATCTCAGCATCAATTCATTG 777
||| ||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 721 CCTTCAGAGCTTGGTGATCTTGTCAATCTGGTTGACTTTGATCTCAGCATCAATTCATTG 780
Query 778 TCTGGTTCAGTTCCTCAGGAGTTGAGAAAGTTAAGGAATTTGCAGCTAATGGCGATTGGC 837
||||||||||||||||||||| | ||||||||||| || |||||||||||||||||||||
Sbjct 781 TCTGGTTCAGTTCCTCAGGAGCTAAGAAAGTTAAGTAAGTTGCAGCTAATGGCGATTGGC 840
Query 838 GATAACCTTTTGAGTGGTACTTTACCAGTAGATTTGTTTAGTGCTGAGAGCCAACTGCAA 897
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 GATAACCTTTTGAGTGGTACTTTACCAGTAGATTTGTTTAGTGCTGAGAGCCAACTGCAA 900
Query 898 ACTTTAGTTTTGAGGGAAAACGGTTTCTCCGGTAGTCTACCTGATGTGTGTTGGTCATTG 957
|||||||||||||||||||| |||||||| |||||||||||||||||||| ||||| |||
Sbjct 901 ACTTTAGTTTTGAGGGAAAATGGTTTCTCTGGTAGTCTACCTGATGTGTGCTGGTCGTTG 960
Query 958 CCGAAATTGCGGATTCTTGACATTGCTAAGAACAACTTCACAGGAATGCTGCCAAATTCT 1017
|| |||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 961 CCAAAATTGCGGATTCTTGACATTGCTAAGAACAACTTCACAGGACTGCTGCCATATTCT 1020
Query 1018 AGTTCTTATCCAGACCAGTTAGCTGAAATGGTTGATATCTCATCGAACACATTCTATGGA 1077
|||| | || |||||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct 1021 AGTTATGATTCAGACCAGATAGCTGAAATGGTTGATATCTCTTCGAACACATTCTATGGA 1080
Query 1078 GAGCTCACACCGATTCTTAGAAGGTTCAGGGA-AGTGGACCTCTCTGGTAACTATTTCGA 1136
||||||||||||||||||||| |||||| ||| | |||||||||||||||| ||||||||
Sbjct 1081 GAGCTCACACCGATTCTTAGACGGTTCA-GGATAATGGACCTCTCTGGTAATTATTTCGA 1139
Query 1137 GGGTAAGGTTCCGGATTATGTGACCGGGGAAAATGTGTCTGTTACTAGCAATTGTCTTCA 1196
|||||| |||| |||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 1140 AGGTAAGCTTCCTGATTATGTGACCGGGGAAAATGTGTCTGTTACAAGCAATTGCCTTC- 1198
Query 1197 G-AATGAGAGGAGACAGAAGCCATCAGCAATATGTTCAGCATTCTATAAATCTAGAGGAT 1255
| |||||||||||||||||||| |||||||||||| ||||||||||||| ||||||||||
Sbjct 1199 GAAATGAGAGGAGACAGAAGCCGTCAGCAATATGTGCAGCATTCTATAAGTCTAGAGGAT 1258
Query 1256 TAGATTTTGATGATTTCGGACGTCCTAATTCT-ACACAACCGACATCGAAAAATGCTTCT 1314
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 1259 TAGATTTTGATGATTTCGGACGTCCTAATT-TGACACAACCGACATCGAAAAATGCTTCT 1317
Query 1315 TCAGGGATAAGCCACAGGACAGTAATTATATT-G--GCAGTGGCTGGTGGAGTTGGTTTT 1371
||||||||||||| ||| |||||||||||||| | ||||||| ||||||||||| ||||
Sbjct 1318 TCAGGGATAAGCCGCAGAACAGTAATTATATTGGCAGCAGTGGGTGGTGGAGTTGCTTTT 1377
Query 1372 ATTCTGATTTTTGTTATCTTGCCAATTATTCTGGTTCTATGCATACGCCATAGACGCAGA 1431
||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1378 ATTCTTCTTTTTGTTATCTTGCCAATTATTCTGGTTCTATGCATGCGCCATAGACGCAGA 1437
Query 1432 GCAGCTCAAAGAGGAAATAACGACAGGCCTAAGCCTGCCGGGGAAGCTTCACAACAACCA 1491
|| || ||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 1438 GCGGCACAAAGAGGAAATAACGACAGGCCAAAACCTGCCGGGGAAGCTTCACAACAACCA 1497
Query 1492 CCTAAAGGAGCACAGACCTTTGATTTGTCACGGCTTGGAAATGCATTTTCATATGAGCAG 1551
|||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 1498 CCTAAAGGAGCACAAACCTTTGATTTGTCACGTCTTGGAAATGCATTTTCTTATGAGCAG 1557
Query 1552 CTTCTCCAAGCAACAGAGGAATTTAATGATGCCAATCTGATAAAACATGGCCATTCTGGG 1611
||||| || |||||||||||||| |||||||| ||||||||||||| ||| ||||| |||
Sbjct 1558 CTTCTTCAGGCAACAGAGGAATTCAATGATGCTAATCTGATAAAACGTGGTCATTC-GGG 1616
Query 1612 G-ATTTGTTTCGTGGTTTCTTGGAAAATGGTATACCCGTTGTTATAAAAAAGATCGATGT 1670
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1617 GAATCTGTTTCGTGGTTTCTTGGAAAATGGTATACCCGTTGTTATAAAAAAGATCGATGT 1676
Query 1671 GCGGGAAAGTAAAAGTGAAGGCTATATATCAGAACTTGAGTTGTTTAGTAAGGCTGGACA 1730
||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1677 GCGGGAAGGTAAAAGTGAAGGCTATATATCAGAACTGGAGTTGTTTAGTAAGGCTGGACA 1736
Query 1731 CCAGAGGCTGGTTCCATTTCTGGGACACTGCTTAGAGAATGAGAGCCAAAAGTTCTTGGT 1790
||||||||||||||| ||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct 1737 CCAGAGGCTGGTTCCCTTTTTGGGACACTGCTTGGAGAATGAGAGCCAAAAGTTCTTGGT 1796
Query 1791 CTACAAGTTTATGAGACACGGTGATTTGGCTAGCTCTTTGTTCAGGAAATCCGAAAACGA 1850
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1797 ATACAAGTTTATGAGACACGGTGATTTGGCTAGCTCTTTGTTCAGGAAATCCGAAAACGA 1856
Query 1851 AGGTGATGGATTGAAGTCTTTGGATTGGATAACAAGGTTGAAAATTGCTCTTGGTGCAGC 1910
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1857 AGGTGATGGATTGAAGTCTTTGGATTGGATAACAAGGTTGAAAATTGCTCTTGGTGCAGC 1916
Query 1911 AGAGGGACTATCTTATTTGCATCACGAGTGTTCGCCACCTCTAGTTCATAGGGATGTACA 1970
|||||||| |||||||||||||| |||||||| || |||||||||||||||||||||||
Sbjct 1917 TGAGGGACTCTCTTATTTGCATCATGAGTGTTCACCGCCTCTAGTTCATAGGGATGTACA 1976
Query 1971 AGCAAGTAGCATACTTCTTGATGATAAATTTGAGGTACGGCTAGGAAGCCTAAGCGAGGT 2030
||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 1977 AGCAAGTAGCATACTTCTTGATGATAAATTTGAGGTACGTCTTGGAAGCCTAAGCGAGGC 2036
Query 2031 ATATGCTCAAGGCGATGCTTATCAAAGCAGGATTTCTCGTTTACTTCGGTTACCACAATC 2090
|||||||||||| ||||||||||||||||| ||||||||||||||||| ||||| |||||
Sbjct 2037 ATATGCTCAAGGTGATGCTTATCAAAGCAGAATTTCTCGTTTACTTCGATTACCGCAATC 2096
Query 2091 GACTGAACCTTCCTCGTCAGGTGCAACAAATGCAACATGTTCCTATGATGTCTACTGCTT 2150
|| |||||| || || ||||||| ||||||||||| |||||| |||||||||||||||||
Sbjct 2097 GAGTGAACCATCTTCTTCAGGTGTAACAAATGCAATATGTTCGTATGATGTCTACTGCTT 2156
Query 2151 TGGCAAAGTGTTACTTGAGCTAGTAACGGGGAAACTCGGGATCAGTTCGCCAGACAACGC 2210
||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||
Sbjct 2157 TGGCAAAGTGTTACTTGAGCTAGTAACGGGGAAGCTCGGGATTAGCTCGCCAGACAACGC 2216
Query 2211 ACTTGCAAAAGAGTACATGGAAGAAGCTTTGGCATACATCAGCACAAATGAGAAGGAACT 2270
||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |||||
Sbjct 2217 ACTTGCAAAAGAGTACATGGAAGAAGCTTTGCCATACATCAGCACAAACGAGAAAGAACT 2276
Query 2271 AGTAACAAAGATCTTAGACCCGTCATTAATGGTGGACGAAGACCTTCTAGAAGAAGTATG 2330
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2277 AGTAACCAAGATCTTAGACCCGTCATTAATGGTGGACGAAGACCTTCTAGAAGAAGTATG 2336
Query 2331 GGCAATGGCTATAATTGCAAAGTCATGCCTAAACCCAAAACCAACAAGAAGACCATTAAT 2390
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2337 GGCAATGGCTATCATTGCAAAGTCATGCCTAAACCCAAAACCAACAAGAAGACCATTAAT 2396
Query 2391 GAGACACATTGTGAACGCACTTGAGAACCCACTGAAAGTAGTGAGAGAAGATACCAACTC 2450
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2397 GAGACACATTGTGAACGCACTTGAGAACCCACTGAAAGTAGTAAGAGAAGATACCAACTC 2456
Query 2451 GGGTTCAGGCTCTTCCCGGTTGAGAACAAACTCGTCGAGAGGGTCTTGGAACGCTGCTAT 2510
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2457 GGGTTCAGGCTCTTCCCGGTTAAGAACAAACTCGTCGAGAGGGTCTTGGAACGCTGCTAT 2516
Query 2511 ATTTGGGAGCTGGAGGCAGAGCGCATCGGATGTAACAGCGGTTCAAGCGGGAGCAACAAC 2570
||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||
Sbjct 2517 ATTTGGGAGCTGGAGGCAGAGTGCGTCGGATGTAACAGCTGTTCAAGCGGGAGCAACAAC 2576
Query 2571 AAG---TGGTGGTGGTGGT---------AACGGTTTGAGGAACTCGGGGTC--ATCGTCA 2616
||| ||||||||||||| || |||||||| ||||||||||| | | |
Sbjct 2577 AAGCGGTGGTGGTGGTGGTGGTGGTGGTAATGGTTTGAGAAACTCGGGGTCGCAAGGA-A 2635
Query 2617 --AGCGGAAGAAACAATAACAACAACGGGAATTCATCGTCA---AGAAGACGGCAATCTA 2671
|||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2636 GTAGCGGAAGGAACAATAACAACAACGGGAATTCATCGTCGTCGAGAAGACGGCAATCTA 2695
Query 2672 GTGAGATTGTACCGGAACCTGCTGCTTATGGAGTAGTAGAGGATAATTTATGA 2724
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2696 GTGAGATTGTACCGGAACCTGCTGCTTATGGAGTAGTAGAGGATAATTTATGA 2748
> AT2G16245.1 | Symbols: | other RNA | chr2:7039677-7040592 FORWARD
LENGTH=826
Length=826
Score = 405 bits (219), Expect = 1e-111
Identities = 241/252 (96%), Gaps = 0/252 (0%)
Strand=Plus/Minus
Query 2107 TCAGGTGCAACAAATGCAACATGTTCCTATGATGTCTACTGCTTTGGCAAAGTGTTACTT 2166
||||||| ||||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 551 TCAGGTGTAACAAATGCAATATGTTCGTATGATGTCTACTGCTTTGGCAAAGTGTTACTT 492
Query 2167 GAGCTAGTAACGGGGAAACTCGGGATCAGTTCGCCAGACAACGCACTTGCAAAAGAGTAC 2226
||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||
Sbjct 491 GAGCTAGTAACGGGGAAGCTCGGGATTAGCTCGCCAGACAACGCACTTGCAAAAGAGTAC 432
Query 2227 ATGGAAGAAGCTTTGGCATACATCAGCACAAATGAGAAGGAACTAGTAACAAAGATCTTA 2286
||||||||||||||| |||||||||||||||| ||||| ||||||||||| |||||||||
Sbjct 431 ATGGAAGAAGCTTTGCCATACATCAGCACAAACGAGAAAGAACTAGTAACCAAGATCTTA 372
Query 2287 GACCCGTCATTAATGGTGGACGAAGACCTTCTAGAAGAAGTATGGGCAATGGCTATAATT 2346
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 371 GACCCGTCATTAATGGTGGACGAAGACCTTCTAGAAGAAGTATGGGCAATGGCTATCATT 312
Query 2347 GCAAAGTCATGC 2358
||||||||||||
Sbjct 311 GCAAAGTCATGC 300
Score = 357 bits (193), Expect = 3e-97
Identities = 265/296 (90%), Gaps = 20/296 (7%)
Strand=Plus/Minus
Query 2448 CTCGGGTTCAGGCTCTTCCCGGTTGAGAACAAACTCGTCGAGAGGGTCTTGGAACGCTGC 2507
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 300 CTCGGGTTCAGGCTCTTCCCGGTTAAGAACAAACTCGTCGAGAGGGTCTTGGAACGCTGC 241
Query 2508 TATATTTGGGAGCTGGAGGCAGAGCGCATCGGATGTAACAGCGGTTCAAGCGGGAGCAAC 2567
|||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||
Sbjct 240 TATATTTGGGAGCTGGAGGCAGAGTGCGTCGGATGTAACAGCTGTTCAAGCGGGAGCAAC 181
Query 2568 AACAAG---TGGTGGTGGTGGT---------AACGGTTTGAGGAACTCGGGGTC--ATCG 2613
|||||| ||||||||||||| || |||||||| ||||||||||| | |
Sbjct 180 AACAAGCGGTGGTGGTGGTGGTGGTGGTGGTAATGGTTTGAGAAACTCGGGGTCGCAAGG 121
Query 2614 TCA--AGCGGAAGAAACAATAACAACAACGGGAATTCATCGTCA---AGAAGACGGCAAT 2668
| |||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 120 A-AGTAGCGGAAGGAACAATAACAACAACGGGAATTCATCGTCGTCGAGAAGACGGCAAT 62
Query 2669 CTAGTGAGATTGTACCGGAACCTGCTGCTTATGGAGTAGTAGAGGATAATTTATGA 2724
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CTAGTGAGATTGTACCGGAACCTGCTGCTTATGGAGTAGTAGAGGATAATTTATGA 6
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 135300245271
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5