BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480796
Length=2296
Score E
Sequences producing significant alignments: (Bits) Value
AT2G16270.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 2026 0.0
> AT2G16270.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures;
EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G16630.1);
Has 1844 Blast hits to 1256 proteins in 271 species: Archae
- 6; Bacteria - 283; Metazoa - 434; Fungi - 153; Plants - 91;
Viruses - 52; Other Eukaryotes - 825 (source: NCBI BLink).
| chr2:7045538-7048326 REVERSE LENGTH=2499
Length=2499
Score = 2026 bits (1097), Expect = 0.0
Identities = 1401/1540 (91%), Gaps = 52/1540 (3%)
Strand=Plus/Plus
Query 1 TTTTAATCACTCATGGCTTCTCCTACCAACAAAACCCCCTCCTTTTCTCCTCCAATCCCT 60
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2 TTTTAATCACTCATGGCTTCTCCTACCAACAAAAATCCCTCCTTTTCTCCTCCAATCCCT 61
Query 61 AACAGACCAAACCCTAAACCCAGAAACTCAGAAGCCGGTGACCCTTTACGGCGGAGCTTT 120
|||||||||||||||||||| |||||||||||||||||||| || ||||| ||||| |||
Sbjct 62 AACAGACCAAACCCTAAACCTAGAAACTCAGAAGCCGGTGATCCGTTACGCCGGAGTTTT 121
Query 121 GGTGGCAACCCTTTTCCGGGGAATACAAAAATCAACATTCCCTCAGATTAT-TCTAGAAG 179
||||||||||||||||||| |||| ||||| ||||||| |||||||||| | |||| ||
Sbjct 122 GGTGGCAACCCTTTTCCGGCGAATTCAAAAGTCAACATCCCCTCAGATT-TGACTAGGAG 180
Query 180 GAACTCTTTTGGTGGAGATAAAGAGAACGAGACCAAACCTGTT---CTAACTCCAAAAAG 236
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 181 GAACTCTTTTGGTGGAGATAAAGAGAACGAGACCAAACCTGTTCAACTAACTCCAAAAGG 240
Query 237 TTCCAAGAACTTTATGTCGCCAACAATTTCAGCGGTTTCTAAAATCAATCCATCTCCAAG 296
|||||||||||| ||||| |||||||||||||| ||||||||||||||| | || |||||
Sbjct 241 TTCCAAGAACTTCATGTCACCAACAATTTCAGCAGTTTCTAAAATCAATGCGTCACCAAG 300
Query 297 GAAGAGAGTGTTGTCTGATAAAAACGAAATGTCTCGATCCTTCTCTGATGTTAAAGGTCT 356
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 301 GAAGAGAGTGTTGTCTGATAAAAACGAAATGTCTCGCTCCTTCTCTGATGTTAAAGGTCT 360
Query 357 AATTTTGGAGGATGATAGCAAAAGAAATCATCACCGAGCTAAGTCTTGTGTTTCATTTTC 416
||| ||||||||||||| ||||||||||||||||||||||||||| |||||||| |||||
Sbjct 361 AATCTTGGAGGATGATAACAAAAGAAATCATCACCGAGCTAAGTCATGTGTTTCGTTTTC 420
Query 417 GGATGTCTTACACACTATTTGTGTCGATGA-GAAGAAGAAGTTTGTGGAATCTCATGACA 475
||||||||| || ||||||||| ||||||| | ||||||||||||||||||| |||||||
Sbjct 421 GGATGTCTTGCATACTATTTGTATCGATGATG-AGAAGAAGTTTGTGGAATCACATGACA 479
Query 476 TGACTGTGACTGATTTTGATGAGAAGGAAGTTTATGAGAACAAGGGGATTACATATTCTG 535
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 480 TGACTGTGACTGATTTTGATGAGAAGGAAGTTTATGAGAACAAAGGGATTACGTATTCTG 539
Query 536 ATCCAAGATTTAGGATTAGTCCTCGTCCTTCTGTTCCATATACATCTCCTGAATTTGCAG 595
|||| || |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 540 ATCCGAGGTTTAGGATTAGTCCTCGTCCTTCTGTTCCATATACATCTCCTGAGTTTGCAG 599
Query 596 CTTGTGAAGTTGATACATTGTTGCCTCCTTATGATCCGAAGAAGAATTTTCTGTCGCCGA 655
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 600 CTTGTGAAGTTGATACATTGTTGCCTCCTTATGATCCCAAGAAGAATTTTCTGTCGCCGA 659
Query 656 GGCCTCAGTTTCTTCATTATAAGCCGAATCCAAGAATCGAGAAGCGTTTTGATGAGTGCA 715
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 660 GGCCTCAGTTTCTTCATTATAAGCCGAATCCAAGAATCGAGAAGCGTTTTGATGAGTGTA 719
Query 716 AGCAACTTGAGGAACTTTTCATCTCTGAAAGCTCTTCTTCGGAGACTGAATTGTCTGTAG 775
|||| ||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 720 AGCAGCTTGAGGAACTTTTCATCTCTGAAAGCTCTTCTGATGACACTGAATTGTCTGTAG 779
Query 776 AAGAATCTGATGAACAAGAGAAGGATGGAGCTGAGG---TGGTAGTAGAAGATGAAACCA 832
|||||||||| ||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 780 AAGAATCTGAGGAACAAGAGAAGGATGGAGCTGAGGAGGTGGTAGTAGAAGAAGAAACCG 839
Query 833 AAGATGTGGAGCAATCCGAAGCAGAGAGTGATGAAGAGATGGTTTGTGAGAGCGTTAAAG 892
|||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |||
Sbjct 840 AAGATGTGGAGCAATCAGAAGCAGAGAGTGATGAAGAAATGGTTTGTGAGAGCGTTGAAG 899
Query 893 AAACAACAAGTCATGTTCCAAAGCAGTCTGGTTTCAGGAAGTTCAAGTTCCTTGGTTGGT 952
||||||||||||| |||||||| |||||||||| |||||| |||||||||||||||||||
Sbjct 900 AAACAACAAGTCAAGTTCCAAAACAGTCTGGTTCCAGGAAATTCAAGTTCCTTGGTTGGT 959
Query 953 TTTTGGCTTTGGCCATGGCGTATTTGTTGGTTTCAGCAACCTTTTCTCCACCGATGAAAT 1012
|||||||| |||| ||| |||||||||||||||||| ||||||||||||| ||||||||
Sbjct 960 TTTTGGCTCTGGCTTTGGGGTATTTGTTGGTTTCAGCGACCTTTTCTCCACTGATGAAAT 1019
Query 1013 CAAGTTTCAACGAGTTTCATATCCCAAGAGAGATCACAGAGTTTGCAAAAGCTAATAACT 1072
|||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1020 CAAGTTTCAACGAGTTCCATATCCCAAAAGAGATCACAGAGTTTGCAAAAGCTAATAACT 1079
Query 1073 TGGA-CAAGTTGAGTGAAAAGCTCTATACTTTGACAGAGTCATCACTTGTGTACATGGAT 1131
|||| || ||||||||| ||||||| ||||||||||| |||||||||||||||||||||
Sbjct 1080 TGGATCA-GTTGAGTGATAAGCTCTGGACTTTGACAGAATCATCACTTGTGTACATGGAT 1138
Query 1132 AAGCTGATCTCAAGTCTTGGAGGAGGTAATGAGGTATATGGTCAGCTGCAATTTCATAAC 1191
|||||||||||| |||||||| |||| ||||||| |||| ||||| | ||||||||||||
Sbjct 1139 AAGCTGATCTCACGTCTTGGACGAGGAAATGAGGAATATAGTCAGTTACAATTTCATAAC 1198
Query 1192 TTGACATATACTCTGGAAGATAATACTGTTTTCCAGTCAACAAGTGTTGAAATCAATGAA 1251
|||||||||||||| || |||| |||||||||| || ||||| |||||||||||| | ||
Sbjct 1199 TTGACATATACTCTTGAGGATAGTACTGTTTTCAAGCCAACATGTGTTGAAATCATTCAA 1258
Query 1252 GAACCATTACAAGAGAAGAGCA-AAGTTGAAACCAATCTTGAAGATGTCTACATAGAAGA 1310
||||||||||||||||| |||| |||| |||| | | | | | || | |||||
Sbjct 1259 GAACCATTACAAGAGAATAGCAGAAGT-GAAA--A--C---A-G-T--CT---T-GAAGA 1302
Query 1311 TGGCTCTGTCAATGAATTTGAGGAGGAGAGTGGAACAGAGGAAAACTCTGAAGTGGTTAG 1370
||||||||| | ||| ||||||||||||||| |||| |||||||||||||| | |
Sbjct 1303 TGGCTCTGT---T-AAT--GAGGAGGAGAGTGGAGCAGAAGAAAACTCTGAAGT--T--G 1352
Query 1371 TGATGCAGAAACTACTGAATTTGATGAAC-AGGCTGAGGTGAAACCGAGCACAGATATAG 1429
|| || | | |||||||||||| || ||||||||||||||||||| |||||||
Sbjct 1353 TG-TG-------T-C--AATTTGATGAACTAG-CTGAGGTGAAACCGAGCACGGATATAG 1400
Query 1430 AATCCAATGACGGTGAAGGAAACTTGAAAGCTCTTTTCGAAGATGGCTTAGAGTTGACCA 1489
|||| |||||||||||| ||||||||||||||||||| ||||||||||||||||||| ||
Sbjct 1401 AATCAAATGACGGTGAAAGAAACTTGAAAGCTCTTTTTGAAGATGGCTTAGAGTTGAACA 1460
Query 1490 TTGAAAAACTGAGAGAGTCTGAGATGAGTCCTGAAGAAAA 1529
||||| ||||||||||||||||||||||||||||||||||
Sbjct 1461 TTGAAGAACTGAGAGAGTCTGAGATGAGTCCTGAAGAAAA 1500
Score = 462 bits (250), Expect = 6e-129
Identities = 468/564 (83%), Gaps = 51/564 (9%)
Strand=Plus/Plus
Query 1653 TGCTGAAAGTGGATCAAAAGAAGCTTTT-GAGGAAACTGCAGCAGAAACTAGTGATGATC 1711
|||||||||||||||| |||||| |||| || |||| |||||||||||||||||||||||
Sbjct 1708 TGCTGAAAGTGGATCAGAAGAAGGTTTTGGA-GAAATTGCAGCAGAAACTAGTGATGATC 1766
Query 1712 TTCATCCTAAAGTAAGGTCTTCTAATAAGACTG-ATAATGATTCCACAAAGGCGGTGATA 1770
|||||| |||||||||||||||||||||| | | ||||||||||||| ||| | |||||
Sbjct 1767 TTCATCTTAAAGTAAGGTCTTCTAATAAGGC-GTATAATGATTCCACCAAGTTGATGATA 1825
Query 1771 GTATTGTCCTCGACAGTGCTGGTTCTACTCGCAGTGGCTTCTTTCTTATTTGCTAAGAAG 1830
||||||||||| || |||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 1826 GTATTGTCCTCCACGGTGCTGGTTCTACTCGCAGTGGCTTCTTTCGTATTCGCTAAGAAG 1885
Query 1831 ACAAAACCCGTAGCT-C--CTAAACCATACCCTGAGACCACCCTGGAGCTAAACTTGGGT 1887
||||||| ||| ||| | |||||||| |||||||| | | |||||||||||||| ||
Sbjct 1886 ACAAAACTCGTGGCTGCTACTAAACCAGCCCCTGAGAGTAACATGGAGCTAAACTTGAGT 1945
Query 1888 CATGTGCCAG-------T------A--GAGAAGCCCTTTTCACTGAATTTCGAGGAAGAA 1932
|||||||||| | | ||||||| ||||||||||||||| |||||||||
Sbjct 1946 CATGTGCCAGAAGAGAATCTGGTGAAAGAGAAGCTCTTTTCACTGAATTTTGAGGAAGAA 2005
Query 1933 GTTGATGACAGAATGAGTAACAGTTACCATCA-AAG---T---G--A-AG-GAGGC--AA 1979
|||||||||| |||||||||||||| ||| | ||| | | | | || | ||
Sbjct 2006 GTTGATGACAAAATGAGTAACAGTTTCCAAAAGAAGAGCTCATGCCACAAAGAACCTCAA 2065
Query 1980 -G-AA-GAAT--AACAAGAATAGCAG---TAGCAG---CA--A-GTTGAGGAGAGAATCA 2025
| || | | || ||||||| || |||||| || | ||||||||||||||||
Sbjct 2066 AGCAAAGGAGGCAAGAAGAATAACAACAATAGCAGTAGCAGCAAGTTGAGGAGAGAATCA 2125
Query 2026 ATGGCATCTTCAGCATCAGAATACTCTGTTGGCTCCTTCTCTTACGGAAGTTTCACAACG 2085
|||||||||||||||||||||||||| ||||||| || ||||||||||||||||||||
Sbjct 2126 ATGGCATCTTCAGCATCAGAATACTCCATTGGCTCTTTTTCTTACGGAAGTTTCACAACA 2185
Query 2086 TACGAGAAAATACCCATCAAAAGTGGTGATAGA-GAAGAAGAGATGATTACACCAGTGAG 2144
|||||||| |||||||||||||||||| | ||| ||||| ||||||||||||||||||||
Sbjct 2186 TACGAGAAGATACCCATCAAAAGTGGT-AGAGAAGAAGAGGAGATGATTACACCAGTGAG 2244
Query 2145 ACGTTCAAGCCGGATTAGGAACAA 2168
||||||||||||||||| ||||||
Sbjct 2245 ACGTTCAAGCCGGATTAAGAACAA 2268
Score = 87.9 bits (47), Expect = 4e-16
Identities = 51/53 (96%), Gaps = 0/53 (0%)
Strand=Plus/Plus
Query 1578 AACCAAAAAGAAGTTGGAAGAAACTGAATCTGAAGCTATCTACAAAAACCAGC 1630
|||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1507 AACCGAAAAGAAGTTGGAAGAAACTGAATCTGAAGCTATCTACATAAACCAGC 1559
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 113955237150
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5