BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480800
Length=1837
Score E
Sequences producing significant alignments: (Bits) Value
AT2G16370.1 | Symbols: THY-1 | thymidylate synthase 1 | chr2:70... 2610 0.0
AT4G34570.1 | Symbols: THY-2 | thymidylate synthase 2 | chr4:16... 1539 0.0
> AT2G16370.1 | Symbols: THY-1 | thymidylate synthase 1 | chr2:7081783-7084557
REVERSE LENGTH=1924
Length=1924
Score = 2610 bits (1413), Expect = 0.0
Identities = 1734/1880 (92%), Gaps = 57/1880 (3%)
Strand=Plus/Plus
Query 1 CTCAAAGATTCTTCCTTTCGCCTTTAAATCGTCTCTGCTTTGGCTTTGTAATAGCCATCG 60
||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct 1 CTCAAAGATTCTTCCTTTCTCCTTTAAATCGTCTCTGCTTTGGCTTTGTACTAGCCATCG 60
Query 61 C-A---ATC--CATCTATTGCAAGTATCATCTCCAAGGTTTTGATTTCCACCATGGCAAC 114
| | ||| ||||||||||||| | ||||||||||||||||||||||| ||||||||
Sbjct 61 CAATTCATCATCATCTATTGCAAG--T-ATCTCCAAGGTTTTGATTTCCACAATGGCAAC 117
Query 115 AACAACTCTAAATGGCAATGACACTACTAGACTTGCTTCAGAGCCTCAAAGGACTTACCA 174
||| ||||| |||| || || ||| |||| ||||||||||||||||||||||||||||||
Sbjct 118 AACTACTCTCAATGACAGTGTCACCACTACACTTGCTTCAGAGCCTCAAAGGACTTACCA 177
Query 175 AGTTGTTGTTGCTGCAACTAAAGAAATGGGTATTGGTAAAGATGGGAAATTGCCATGGAA 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 AGTTGTTGTTGCTGCAACTAAAGAAATGGGTATTGGTAAAGATGGGAAATTGCCATGGAA 237
Query 235 TTTGCCTACAGATCTCAAGTTCTTTAAAGACATTACTTTGACCACTTCAGATTCCTCTAA 294
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 TTTGCCAACAGATCTCAAGTTCTTTAAAGACATTACTTTGACCACTTCAGATTCCTCTAA 297
Query 295 GAAAAATGCTGTTGTGATGGGTAGAAAGACTTGGGAGGCTATTCCAATTAAGCATAGGCC 354
||||||||||||||||||||||||||||||||||||| ||||||| |||||| |||||||
Sbjct 298 GAAAAATGCTGTTGTGATGGGTAGAAAGACTTGGGAGTCTATTCCCATTAAGTATAGGCC 357
Query 355 GCTTTCGGGTCGGCTTAACGTTGTTTTAACTCGCTCTGGTGGGTTTGATATAGCTAACAC 414
||||||||||||||||||||||||| ||||||| |||||||||||||||||||| |||||
Sbjct 358 GCTTTCGGGTCGGCTTAACGTTGTTCTAACTCGTTCTGGTGGGTTTGATATAGCCAACAC 417
Query 415 TGAGAATGTTGTCACTTGCAGTAGTGTAGATTCTGCTCTTGATTTATTAGCTGCACCGCC 474
|||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||||
Sbjct 418 TGAGAATGTTGTCACTTGTAGTAGTGTAGATTCTGCTCTTGATTTGTTAGCTGCGCCGCC 477
Query 475 GTATTGTTTATCTATTGAGAGGGTGTTTGTTATAGGAGGTGGTGACATATTGAGGGAAGC 534
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 478 GTATTGTTTATCTATTGAGAGGGTTTTTGTTATAGGAGGTGGTGACATATTGAGGGAAGC 537
Query 535 ATTGAACAGGCCTAGTTGTGATGCTATCCATTTAACTGAGATTGATACAAGTATTGAATG 594
|||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 538 ATTGAATAGGCCTAGTTGTGATGCTATCCATTTAACTGAGATTGATACAAGTGTTGACTG 597
Query 595 TGATACGTTTATACCTGCGGTTGACACAACTGTTTATCAGCCTTGGTGTTCATCGTTTCC 654
||||||||||||||||||| |||| || |||||||||||||||||| ||||||||||||
Sbjct 598 TGATACGTTTATACCTGCGATTGATACTTCTGTTTATCAGCCTTGGTCTTCATCGTTTCC 657
Query 655 AGTAACTGAAAATGGACTTCGGTTTTGCTTCACGACTTTTGTCCGTGTAAAAAG-T-T-C 711
||||||||||||||||||||||||||||||||||||||||||||||||||| || | | |
Sbjct 658 AGTAACTGAAAATGGACTTCGGTTTTGCTTCACGACTTTTGTCCGTGTAAAGAGTTCTGC 717
Query 712 ---T--A----CTGATGAAAGCAATGTGTCACAGTCTCTTCAATTTGATGGGAAGAAGTT 762
| | ||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 718 TGATGAATCTTCTGATGAAAGCAATGGGTCACAGTCTCTTCAATTTGATGGGAAGAAGTT 777
Query 763 TTTGTTTCTTCCCAAGATGGTTTTTGATCAGCATGAGGAATTTCTGTATTTGAATATGGT 822
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 778 TTTGTTTCTTCCTAAGATGGTTTTTGATCAGCATGAGGAGTTTCTGTATTTGAATATGGT 837
Query 823 TGAAGATATCATCTCTAATGGCAATGCGAAGAATGATAGGACCGGGACTGGTACATTATC 882
||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 838 TGAAGATATTATCTCTAATGGCAATGTGAAGAATGATAGGACCGGGACTGGTACATTATC 897
Query 883 AAAATTTGGTTGCCAGATGAAACTCAATTTACGCAGAAGTTTTCCACTTCTGACAACTAA 942
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct 898 AAAATTTGGTTGCCAGATGAAATTCAATTTACGCAGAAGTTTTCCACTTCTGACAACAAA 957
Query 943 GAGAGTTTTTTGGAGAGGTGTTGTTGAGGAACTTCTATGGTTTATAAGCGGTTCAACCAA 1002
| ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 958 GCGAGTTTTCTGGAGAGGTGTTGTTGAGGAACTTCTATGGTTCATAAGCGGTTCAACCAA 1017
Query 1003 TGCAAAGGTTCTTCAGGAAAAAGGTATCCATATATGGGATGGGAATGCGTCAAGAGAGTA 1062
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 TGCAAAAGTCCTTCAGGAAAAAGGTATCCATATATGGGATGGGAATGCGTCAAGAGAGTA 1077
Query 1063 TCTCGATGGTATCGGTCTGACAGAGAGAGAGGAAGGCGACCTTGGACCTGTATACGGATT 1122
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 TCTCGATGGTATCGGCCTGACAGAGAGAGAGGAAGGCGACCTTGGACCTGTATACGGATT 1137
Query 1123 TCAATGGCGACACTTTGGTGCTAAGTACACGGATATGCACGCTGATTATACTGGTCAAGG 1182
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 1138 TCAATGGCGACACTTTGGTGCTAAGTACACAGATATGCATGCTGATTATACTGGTCAAGG 1197
Query 1183 TTTTGATCAACTCT-TAGATGTAATTGACAAAATCAAGAACAATCCTGATGATCGGCGTA 1241
||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1198 ATTTGATCAACT-TGTAGATGTAATTGACAAAATCAAGAACAATCCTGATGATCGGCGTA 1256
Query 1242 TTATAATGTCAGCTTGGAATCCTTCTGACCTCAAGTTGATGGCACTTCCTCCATGCCATA 1301
|||||||||||||||||||||||||||| || ||| ||||||||||||||||||||||||
Sbjct 1257 TTATAATGTCAGCTTGGAATCCTTCTGATCTTAAGCTGATGGCACTTCCTCCATGCCATA 1316
Query 1302 TGTTTGCACAGTTCTATGTGGCAGAAGGGGAACTCTCATGTCAAATGTATCAGCGTTCAG 1361
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1317 TGTTTGCACAATTTTATGTGGCAGAAGGGGAACTCTCATGTCAAATGTATCAGCGTTCAG 1376
Query 1362 CGGATATGGGCCTTGGTGTGCCATTTAACATTGCTTCCTACTCTCTTCTTACTTGCATGC 1421
| |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 1377 CAGATATGGGCCTTGGTGTGCCGTTTAACATTGCTTCTTACTCTCTTCTTACTTGCATGC 1436
Query 1422 TGGCTCACGTGTGTGATCTTGTTCCTGGTGATTTTATCCATGTTATTGGGGATGCTCATG 1481
||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1437 TGGCTCATGTGTGTGATCTTGTTCCTGGTGATTTTATCCATGTTCTTGGGGATGCTCATG 1496
Query 1482 TGTACAAAACTCATGTAATGCCTCTGCAAGAGCAACTTCTGAACCCACCTAAACCTTTTC 1541
| ||||||||||| || | |||||||||||||||||||||||| | || ||||| ||||
Sbjct 1497 TATACAAAACTCACGTGAGGCCTCTGCAAGAGCAACTTCTGAATCTTCCAAAACCCTTTC 1556
Query 1542 CTGTTTTGAAGATAAACCCAGAGAAGAAACAAATTGATTCTTTTGTGGCTGCTGACTTTG 1601
|||| ||||||||||||| |||||||||||||| ||||||||||||||| |||||||||
Sbjct 1557 CTGTAATGAAGATAAACCCGGAGAAGAAACAAATCGATTCTTTTGTGGCTTCTGACTTTG 1616
Query 1602 ACCTCACAGGATATGATCCTCACAAGAAGATAGAGATGAAAATGGCGGTTTAGT------ 1655
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1617 ACCTCACAGGCTATGATCCTCACAAGAAGATAGAAATGAAAATGGCGGTTTAGTTCTCAT 1676
Query 1656 -----------GGATATGACCAAAAGGAGACTACCGACAAATTGATTGTGTAATATCCTT 1704
|||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 1677 CTCTTACTATAGGATATGACCAAAAGGAGACTACCGACAAATTGATTGTGTAAAAT--TT 1734
Query 1705 CTCTTT---TCAGTTTT-T--CTTTGAA-GTAGTCTACCGACAAATTACCAAACTGT-GT 1756
| || |||| | | | | || ||| | || || |||||| || | ||
Sbjct 1735 ATGATTGAATCAGATGAATGACCATCAATGTA-TGGACT--CATATTACC---CTTTTGT 1788
Query 1757 GGGTGATAACTTGTCATTAAACATGTGTTGGAATCCTCTAGTTCCACAGGGTTCTAGAGC 1816
||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct 1789 GGGTGATAACTTGTCAT-AAACATGTGTTGGAATCCTCTAGTTCCACATGGTTCTAGAGC 1847
Query 1817 GATTTAGGAGTTTATACTTC 1836
||||||||| ||||||||||
Sbjct 1848 GATTTAGGATTTTATACTTC 1867
> AT4G34570.1 | Symbols: THY-2 | thymidylate synthase 2 | chr4:16511001-16514343
REVERSE LENGTH=1957
Length=1957
Score = 1539 bits (833), Expect = 0.0
Identities = 1353/1599 (85%), Gaps = 55/1599 (3%)
Strand=Plus/Plus
Query 88 CAAGGTTTTGATTTCCACCATGGCAACAACAACTCTAAATGGCAATGACACTACTAGACT 147
|||||||| ||||| |||||||| | ||| ||||| ||||| |||| | | | |
Sbjct 254 CAAGGTTTCAATTTCAACCATGGC-A-AAC-ACTCTCAATGGAAATGTGA-T-C---A-- 303
Query 148 TG-CTTCAGAGCCTCAAAGGACTTACCAAGTTGTTGTTGCTGCAACTAAAGAAATGGGTA 206
|| ||||| ||||||| || |||||||||||||| || |||||||| || ||||||||||
Sbjct 304 TGACTTCAAAGCCTCAGAGTACTTACCAAGTTGTGGTAGCTGCAACCAAGGAAATGGGTA 363
Query 207 TTGGTAAAGATGGGAAA-TTGCCATGGAATTTGCCTACAGATCTCAAGTTCTTTAAAGAC 265
|||||||||| || ||| || ||||||||||||||||| |||||||||||||| || ||
Sbjct 364 TTGGTAAAGACGGAAAACTT-CCATGGAATTTGCCTACCGATCTCAAGTTCTTCAAGGA- 421
Query 266 ATT-ACTTTGACCACTTCAGATTCCT-CTAAGAAAAATGCTGTTGTGATGGGTA-GAAAG 322
|| |||||| ||||||| |||| || ||||||| || |||||||| ||||||| ||||
Sbjct 422 TTTAACTTTGTCCACTTCGGATT-CTGCTAAGAAGAACGCTGTTGTTATGGGTAGGAAA- 479
Query 323 ACTTGGGAGGCTATT-CCAATTAAGCATAGGCCGCTTTCGGGTCGGCTTAACGTTGTTTT 381
|| |||||| ||||| |||| ||| ||||||| || || ||||| || || ||||| ||
Sbjct 480 ACGTGGGAGTCTATTCCCAA-AAAGTATAGGCCACTCTCTGGTCGCCTGAATGTTGTCTT 538
Query 382 AACTCGCTCTGGTGGGTTT-GATATAGCTAACACTGAGAATGTTGTCACTTGCAGTAGTG 440
|||| ||| | ||||| |||||||| |||||||| |||||||| |||||||||||
Sbjct 539 GTCTCGTTCTAG-CGGTTTCGATATAGCCAACACTGAAAATGTTGTAACTTGCAGTAGCA 597
Query 441 TAGATTCTGCTCTTGATTTATTAGCTGCACCGCCGTATT-GTTTATCTATTGAGAGGGTG 499
||||||||||||| || |||||||||||||| |||| || || | || ||||||| |||
Sbjct 598 TAGATTCTGCTCTAGACTTATTAGCTGCACCTCCGT-TTAGTCTGTCCATTGAGAAAGTG 656
Query 500 TTTGTTATAGGAGGTGGTGACATATTGAGGGAAGCATTGAACAGGCCTAGTTGTGATGCT 559
||||| ||||||||||| ||||||||||||||||| ||||| | || || ||||| ||
Sbjct 657 TTTGTAATAGGAGGTGGCGACATATTGAGGGAAGCTTTGAATAAACCGAGCTGTGAAGCC 716
Query 560 ATCCATTTAACTGAGATTGATACAAGTATTGAATGTGATACGTTTATACCTGCGGTTGAC 619
||||| |||||||||||||||||||||| || |||||||| ||||| || ||||||||
Sbjct 717 ATCCACATAACTGAGATTGATACAAGTATCGACTGTGATACATTTATTCCCACGGTTGAC 776
Query 620 ACAACTGTTTATCAGCCTTGGTGTTCATCGTTTCCAGTAACTGAAAATGGACTTCGGTTT 679
|| ||| ||||||||||||||||| ||||||||| || ||||||||| ||||| |||
Sbjct 777 ACTTCTGCATATCAGCCTTGGTGTTCGTCGTTTCCAATATGTGAAAATGGTCTTCGATTT 836
Query 680 TGCTTCACGACTTTTGTCCGTGTAAAAAG----T-T--C--T--A----CTGATGAAAGC 724
| |||||||||| ||| |||||||| || | | | | | ||||||| ||
Sbjct 837 TCCTTCACGACTCATGTTCGTGTAAAGAGTTCTTCTGCCGGTGAAGCCTCTGATGAGAGT 896
Query 725 AATGTGTCACA-GTCTCTTCAATTTGATGGGAAGAAG-TTT-TTGT-TTCTTCCCAAGAT 780
||| |||| | || ||||||| ||||| |||||||| ||| || | ||||||| || ||
Sbjct 897 GATGGGTCAAAGGT-TCTTCAAGTTGATTGGAAGAAGTTTTCTTCTGTTCTTCCTAAAAT 955
Query 781 GGTTTTTGATCAGCATGAGGAATTTCTGTATTTGAATATGGTTGAAGATATCATCTCTAA 840
| ||||||| | ||||||||||| ||| || || ||| |||| |||| || ||||| ||
Sbjct 956 GATTTTTGACCGGCATGAGGAATATCTCTACTTAAATCTGGTCAAAGAGATAATCTCAAA 1015
Query 841 TGGCAA-TGCGAAGAATGATAGGACCGGGACTGGTACATTATCAAAATTTGGTTGCCAGA 899
||| || | ||| | |||||||| ||||||||||||||||| ||||||||||| ||||
Sbjct 1016 TGGAAACTTAAAAG-ACGATAGGACAGGGACTGGTACATTATCTAAATTTGGTTGTCAGA 1074
Query 900 TGAAACTCAATTTACGCA-GAAGTTTTCCACTTCTGACAACTAAGAGAGTTTTTTGGAGA 958
||||| |||||||||||| ||| ||||||||||||||| || ||||||||||| ||||||
Sbjct 1075 TGAAATTCAATTTACGCAGGAA-TTTTCCACTTCTGACGACAAAGAGAGTTTTCTGGAGA 1133
Query 959 GGTGTTGTTGAGGAACTTCTATGGTTTATAAGCGGTTCAACCAATGCAAAGGTTCTTCAG 1018
|||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 1134 GGTGTTGTTGAGGAACTTCTATGGTTCATAAGCGGTTCAACCAATGCAAAGGTACTTCAA 1193
Query 1019 GAAAAAGGTATCCATATATGGGATGGGAATGCGTCAAGAG-AGTATCTCGATGGTATCGG 1077
||||| ||||||| ||||||||||||||||||||| |||| | ||||| |||||||| ||
Sbjct 1194 GAAAAGGGTATCCGTATATGGGATGGGAATGCGTCGAGAGCA-TATCTTGATGGTATTGG 1252
Query 1078 TCTGACAGAGAGAGAGGAAGGCGACCTTGGACCTGTATACGGATTTCAATGGCGACACTT 1137
||||| |||||||||||||| ||||||||||| || || |||||||| ||| |||||||
Sbjct 1253 ACTGACTGAGAGAGAGGAAGGTGACCTTGGACCCGTTTATGGATTTCAGTGGAGACACTT 1312
Query 1138 TGGTGCTAAGTACACGGATATGCACGCTGATTATACTGGTCAAGGTTTTGATCAACTCTT 1197
||||||||||||||| |||||||| |||||||||||||| ||||| |||||||| |||||
Sbjct 1313 TGGTGCTAAGTACACAGATATGCATGCTGATTATACTGGCCAAGGATTTGATCAGCTCTT 1372
Query 1198 AGATGTAATTGACAAAATCAAGAACAATCCTGATGATCGGCGTATTATAATGTCAGCTTG 1257
|||||||||| |||| ||||||||||||||||||||||| || |||||||||||||||||
Sbjct 1373 AGATGTAATTAACAAGATCAAGAACAATCCTGATGATCGACGGATTATAATGTCAGCTTG 1432
Query 1258 GAATCCTTCTGACCTCAAGTTGATGGCACTTCCTCCATGCCATATGTTTGCACAGTTCTA 1317
|||||||||||| || ||| |||||||||||||||||||||| |||||||||||||| ||
Sbjct 1433 GAATCCTTCTGATCTTAAGCTGATGGCACTTCCTCCATGCCACATGTTTGCACAGTTTTA 1492
Query 1318 TGTGGCAGAAGGG-GAACTCTCATGTCAAATGTATCAGCGTTCAGCGGATATGGGCCTTG 1376
||| ||| || || ||||| |||||||||||||||||||||||||| |||||||| || |
Sbjct 1493 TGTTGCA-AATGGAGAACTTTCATGTCAAATGTATCAGCGTTCAGCCGATATGGGTCTCG 1551
Query 1377 GTGTGCCATTTAACATTGCTTCCTACTCTCTTCTTACTTGCATGCTGGCTCACGTGTGTG 1436
| || || ||||||||||| || ||||| |||||||| ||||| || |||||||| || |
Sbjct 1552 GCGTACCGTTTAACATTGCCTCATACTCCCTTCTTACATGCATTCTTGCTCACGTCTGCG 1611
Query 1437 ATCTTGTTCCTGGTGATTTTATCCATGTTATTGGGGATGCTCATGTGTACAAAA-CTCAT 1495
|||||||||||||||||||||||||||| ||||| ||||||||||| ||||||| | |||
Sbjct 1612 ATCTTGTTCCTGGTGATTTTATCCATGTGATTGGAGATGCTCATGTTTACAAAAAC-CAT 1670
Query 1496 GTAATGCCTCTGCAAGAGCAACTTCTGAACCCACCTAAACCTTTTCCTGTTTTGAAGATA 1555
|| | ||||||||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 1671 GTCAGGCCTCTGCAAGAGCAACTTGAGAACCCACCAAAACCTTTTCCTGTTTTGAAGATA 1730
Query 1556 AACCCAGAGAAGAAACAAATTGATTCTTTTGTGGCTGCTGACTTTGACCTCACAGGATAT 1615
|| |||||||||||| | || ||||||||||| || | ||||||||| |||| || |||
Sbjct 1731 AATCCAGAGAAGAAAGATATAGATTCTTTTGTTGCGGATGACTTTGAGCTCATTGGCTAT 1790
Query 1616 GATCCTCACAAGAAGATAGAGATGAAAATGGCGGTTTAG 1654
|||||||||||||| ||||| ||||||||||| ||||||
Sbjct 1791 GATCCTCACAAGAAAATAGATATGAAAATGGCTGTTTAG 1829
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90913186995
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5