BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg480802

Length=414
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G16385.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   512    9e-145


> AT2G16385.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: endomembrane system; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT4G34600.1); Has 
35333 Blast hits to 34131 proteins in 2444 species: Archae 
- 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants 
- 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 
| chr2:7094799-7095759 FORWARD LENGTH=537
Length=537

 Score =  512 bits (277),  Expect = 9e-145
 Identities = 355/392 (91%), Gaps = 7/392 (2%)
 Strand=Plus/Plus

Query  24   AATTCCTAGGAGAGCTAATAAAGTTATGGGTGTGTCACCATTAATGGTGAAGAAACTTGG  83
            |||||| ||||||| |||| ||||||||||| |||||||||||| |||||||||||||||
Sbjct  59   AATTCCAAGGAGAGATAATTAAGTTATGGGTATGTCACCATTAACGGTGAAGAAACTTGG  118

Query  84   TTTCATCTTCATGATTGTTTTAGCTTCTGCTCTTTCTGTCTCTTTTGCAGGCCGACCATC  143
            |||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct  119  TTTCATCTTCATGATTGTTTCAGCTTCTGCTCTTTCTGTCTCCTTTGCAGGCCGACCATC  178

Query  144  GGTTCTAGTCCATACACATATAGATCTTCGTGATGAGATGGTGGAAAGAAGCATGCATGA  203
            | || | || |||| | | ||| ||||||| || ||||||||||||||||||||||||||
Sbjct  179  GATTTTTGTTCATAAAAAAATAAATCTTCGCGAAGAGATGGTGGAAAGAAGCATGCATGA  238

Query  204  TCATGAGAGGCTTTTAAGAATGAACACAAAGGATTATGGGCACAACAGTCCGTCGCCAAG  263
             |||||||||||| |||||||||||||||||||||||||| ||||||||||||| || ||
Sbjct  239  GCATGAGAGGCTTCTAAGAATGAACACAAAGGATTATGGGAACAACAGTCCGTCACCTAG  298

Query  264  ACTTGAGAGGCCTCCTTTCAAGCTTATTCCCAATTGATGACATCAGAATTGGTTCTAATC  323
            ||||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct  299  ACTTGAGAGACCTCCTTTCAAGCTTATACCCAATTGATGACATTAGAATTGGTTCTAATC  358

Query  324  CACATTAATTAatataaatatatacatatataGGTTTAATTAGTTTCAGTGACTATATAG  383
            ||  |   |||| |||| |||||||||||||||||  |||||||||||||||||||||||
Sbjct  359  CA--TCC-TTAA-ATAA-TATATACATATATAGGTAGAATTAGTTTCAGTGACTATATAG  413

Query  384  TTTCATCGAAATT-GAGAGATGTAATATAAAT  414
            || |||||||||| | ||||||||||||||||
Sbjct  414  TTCCATCGAAATTTG-GAGATGTAATATAAAT  444



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19604422110


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5