BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480804
Length=2098
Score E
Sequences producing significant alignments: (Bits) Value
AT2G16400.1 | Symbols: BLH7 | BEL1-like homeodomain 7 | chr2:71... 2765 0.0
> AT2G16400.1 | Symbols: BLH7 | BEL1-like homeodomain 7 | chr2:7101330-7103921
REVERSE LENGTH=2156
Length=2156
Score = 2765 bits (1497), Expect = 0.0
Identities = 1927/2120 (91%), Gaps = 88/2120 (4%)
Strand=Plus/Plus
Query 1 ATAGCTTCAATCAATTTTATTGCAGCAAACAAACAAAAAGGCCAGGGACACGAAAGAGAG 60
||||||||| ||||||||||||||||||||||||| |||||||| | | | ||| |
Sbjct 1 ATAGCTTCATTCAATTTTATTGCAGCAAACAAACAGAAAGGCCA--G--A-G--AGA-CG 52
Query 61 ATAGAGAGAGGCATTAGGGTTTAGGATTACGTTTTAGAGAAGGGTTTAGATCTCTACCAC 120
| ||||||||||||||||||||||||||| |||||||| ||||||||||| ||| |
Sbjct 53 AAAGAGAGAGGCATTAGGGTTTAGGATTAGGTTTTAGAAAAGGGTTTAGA--TCT----C 106
Query 121 TACCAACTGGTTTGTTAAGAACAGAATCTCCTTAACACAtttttactttttaaaacattt 180
||||||||||||||||||||||| |||||||||| |||||||||||| || |||||||||
Sbjct 107 TACCAACTGGTTTGTTAAGAACATAATCTCCTTACCACATTTTTACTCTTGAAAACATTT 166
Query 181 tgtttttgtttttGTTATCTTCACCAAAAGACTTGACTCcaagaaacaacaagaagaaga 240
|| | ||||||||||||||||||||||||||||||||||||| | ||| ||||
Sbjct 167 TG-ATCTGTTTTTGTTATCTTCACCAAAAGACTTGACTCCAAG--A-AAC------AAGA 216
Query 241 agaagaatcaagaagcaagttcaagaaccaaccagc-tttaaag-aa---caaaaggaaa 295
||||||||||||||||||||||||| ||||||| ||||| | || | | |||
Sbjct 217 AGAAGAATCAAGAAGCAAGTTCAAG----AACCAGCTTTTAATGAAATCTCTACTTCAAA 272
Query 296 gTTAA--AAACTTGCTTTAGGGA-GATGGGTCTTTTGTTTTCTTGAATCTTTTGTGT-GG 351
|| |||||||||||| ||| ||||| ||||||||||||||||||||||||||| ||
Sbjct 273 ---AAGGAAACTTGCTTTAAGGAGGATGGATCTTTTGTTTTCTTGAATCTTTTGTGTGGG 329
Query 352 -----------G-----TCAAGATTTTGATTTAAGGAG-----GGGTTTGTTATTAATTT 390
| ||||||||||||||| ||||| | ||||||| |||| ||
Sbjct 330 TAAAACATTTTGTATTATCAAGATTTTGATTTGAGGAGATAAAGAGTTTGTTGTTAAGTT 389
Query 391 TGTGTTCTTGGGATCATCAAGACTT----C------aaaaaaaCAttttttttttccttt 440
|||||||||||||||||||||| || | |||||||||||| ||||||||||
Sbjct 390 TGTGTTCTTGGGATCATCAAGAGTTAAAACAAAAAAAAAAAAACATTTCTTTTTTCCTTC 449
Query 441 ttCAATTTGAGATTTAGTGTCTCCTTTAACACCCACAAAGCCAGCAGATGCTTTACTGAT 500
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 450 TTCAATTTGAGATTTAGTGTCTCCTTTAACACCCACAAAGCCAGCAGATGCTTTCCTGAT 509
Query 501 GAATCCTTGTTTGATGGTTATGATCTAGAAGAAGAAGAAGACTATGGCAACTTATTACAA 560
|| ||||||||||| | ||||| | |||||||||||||||||||| |||||||||||
Sbjct 510 GACTCCTTGTTTGA----TCTGATC-ATAAGAAGAAGAAGACTATGGCCACTTATTACAA 564
Query 561 AACTGGCTCAAGTGAGATTTATTCCAGACCAGAATTTGTCTCTGGAAACGCAATGAGCTA 620
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct 565 AACTGGCTCAAGTGAGATTTATTCCAGACCAGAATTTGTCCCTGGAAACGCAATGAACTA 624
Query 621 CACAAATTCTTTCTCAGAGACTTTTCCTAGAGAAGCAACTAATAATGTCTCAGCTTCTAA 680
||||||||||||| ||||||| ||||||||||| ||||||||||||| ||| |||| ||
Sbjct 625 CACAAATTCTTTCACAGAGACATTTCCTAGAGATTCAACTAATAATGTGTCACCTTCAAA 684
Query 681 AGAGATTCAAGTATTGTCAAGTCTTGGTGGAGCTTCACAAATGGTGGAGATTCAAGATTC 740
|||||||||||| |||||||| |||||||||| |||||||||||| ||||||||||||||
Sbjct 685 AGAGATTCAAGTGTTGTCAAGCCTTGGTGGAGTTTCACAAATGGTTGAGATTCAAGATTC 744
Query 741 TGGTTCTTGGAGAGATCAAGAAGACAATGACAGGAGTCGCTTCCCGGTGATGATGCGTCT 800
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 745 TGGTTCTTGGAGAGATCAAGAAGACAATGACAGGAATCGCTTCCCGGTGATGAGGCGTCT 804
Query 801 TGGCCTCAGCTCGCAGATTGAGACATCGAGAGGCACTAATAACAATGAGTATGCAACACA 860
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 805 TGGCCTCAGCTCGCAGATTGAGACATCGAGAGGCAATAATAACAATGAGTATGCAACACA 864
Query 861 GGTTGTTTCGGGATTTACTCGAACCATTCACAACTCAAAGTACCTCAAGGCTGCTCAAGA 920
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 865 GGTTGTTTCGGGATTTACTCGAACCATTCACAACTCAAAGTATCTCAAAGCTGCTCAAGA 924
Query 921 GCTTCTTGATGAAGCTGTTAATGTTAAGAAAGCTCTGAAGCAGTTTCAGCCACAGGGAGA 980
||||||||||||| |||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct 925 GCTTCTTGATGAAACTGTTAATGTTAAGAAAGCTCTAAAGCAGTTTCAGCCAGAGGGAGA 984
Query 981 CAAGATTGATGAAGTGAAAGAGAAGAATCTTCAGACGAATATTGCTGAAATCCCTCAAGC 1040
|||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 985 TAAGATTAATGAAGTGAAAGAGAAGAATCTTCAGACGAATACTGCTGAAATCCCTCAAGC 1044
Query 1041 AGAGAGACAAGAAATGCAGAGCAAGTTGTCCAAACTTTTATCGATATTAGACGAGGTGGA 1100
|||||| |||||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1045 AGAGAGGCAAGAATTGCAGAGCAAGTTGTCGAAACTTTTATCGATATTAGACGAGGTGGA 1104
Query 1101 TAGAAATTACAAGCAGTATTACCACCAGATGCAGATAGTTGTGTCGTCTTTCGATGTAAT 1160
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 1105 TAGAAATTACAAGCAGTATTACCATCAGATGCAGATAGTCGTGTCGTCTTTCGATGTAAT 1164
Query 1161 AGCTGGATGTGGAGCAGCCAAACCATACACGGCCCTTGCGCTTCAGACCATCTCTAGGCA 1220
||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 1165 AGCCGGATGTGGAGCAGCCAAACCATACACAGCCCTTGCGCTTCAGACCATCTCGAGGCA 1224
Query 1221 TTTTCGTTGCTTAAGGGATGCGATATCCGGACAAATCTTGGTGATAAGGAAAAGTTTAGG 1280
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1225 TTTCCGTTGCTTAAGGGATGCGATATCCGGACAAATCTTGGTGATAAGGAAAAGTTTAGG 1284
Query 1281 AGGGGAACAGGATGGATCAGATGGGAGAGGAGTGGGGATAAGCAGGTTAAGGAATGTTGA 1340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1285 AGGGGAACAGGATGGATCAGATGGGAGAGGAGTGGGGATAAGCAGGTTAAGGAATGTTGA 1344
Query 1341 TCAACAGGTAAGGCAACAAAGAGCATTGCAGCGGTTAGGTGTGATGCAACCTCACACTTG 1400
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1345 TCAACAGGTAAGGCAACAAAGAGCGTTGCAGCGGTTAGGTGTGATGCAACCTCACACTTG 1404
Query 1401 GCGGCCTCAACGCGGTTTACCTGATTCCTCTGTTTTGGTTCTCCGTGCTTGGCTGTTCGA 1460
||||||||||||||||||||| ||||| |||||||||||||||||||||||||| || ||
Sbjct 1405 GCGGCCTCAACGCGGTTTACCAGATTCTTCTGTTTTGGTTCTCCGTGCTTGGCTATTTGA 1464
Query 1461 GCATTTCCTCCACCCTTATCCAAAGGATTCAGACAAGATCATGCTGGCTAGACAAACGGG 1520
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1465 GCATTTCCTCCACCCTTATCCAAAGGATTCAGACAAGATCATGCTCGCTAGACAAACGGG 1524
Query 1521 GTTGAGTCGAGGCCAGGTGTCGAACTGGTTCATAAATGCGCGTGTGCGTCTCTGGAAACC 1580
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1525 GTTGAGCCGAGGCCAGGTATCGAACTGGTTCATAAATGCGCGTGTGCGTCTCTGGAAACC 1584
Query 1581 GATGGTGGAGGAGATGTACAAGGAGGAATTCACAGATGCATTGGAGGAGAATGATCCCAA 1640
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1585 GATGGTGGAGGAGATGTACAAGGAGGAATTCACAGATGCATTGCAGGAGAATGATCCCAA 1644
Query 1641 CCCGTCTTCTGAAAACACACCAGAAATCACCGACATTCAAGAGCAACAAACTGAGTCTAG 1700
|| |||||||||||||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct 1645 CCAGTCTTCTGAAAACACACCAGAAATCACCGAGATTCAAGAGCTGCAAACTGAGTCTAG 1704
Query 1701 TTCCAACAACGGACGTGTATCTAGTCTGCCAAGCAGTAGCATTG-GACAAAGCACGGTGG 1759
||||||||| || | |||| || || || ||||||||||||| | |||||| ||| ||||
Sbjct 1705 TTCCAACAATGGGCATGTACCTGGTGTGGCAAGCAGTAGCAT-GAGACAAAACACAGTGG 1763
Query 1760 CCCGTGGTGGTGACCAGTTCATGATGGTGACTGACATAACAAGAAATGGTAGTGGTGGGA 1819
||| ||||||||||| ||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 1764 CCCATGGTGGTGACCGGTTCATGATGGTGACTGACATGACAAGAAATGGTAATGGTGGGA 1823
Query 1820 TGTCTTTAACATTGGGGATTCAGAATTCCGA--CA-G---CGATGTTCCTATGTCCGGTG 1873
|||||||||| |||||||||||||||||||| | | ||||||||||||||||||||
Sbjct 1824 TGTCTTTAACGTTGGGGATTCAGAATTCCGATGCTCGTGGCGATGTTCCTATGTCCGGTG 1883
Query 1874 GGATAGATAACTACGAGAATACCATCCCGGGAACCAATCTCCAATACTTAAACTCTCGCA 1933
|||||||||||||| ||||||||||| |||||||| |||| || ||||||||||||||||
Sbjct 1884 GGATAGATAACTACAAGAATACCATCTCGGGAACCGATCTACAGTACTTAAACTCTCGCA 1943
Query 1934 ACCACCAGCACCGGCTTGGCTCTTCACAATTGTTGCATGACTTTGTAGCTTGATGAGGAG 1993
|||||||||||| | ||||||||||||||||||||||||| |||||||||||| | | ||
Sbjct 1944 ACCACCAGCACCAGATTGGCTCTTCACAATTGTTGCATGATTTTGTAGCTTGA-G-G-AG 2000
Query 1994 AATAGAAAGGTGTCGAAATGTATTCTTTTGTGAAAGTAAACCAAAAAAGACGAAATTGTA 2053
||||||||||||| |||||| ||||||||||||||||||||| ||||| |||||||||||
Sbjct 2001 AATAGAAAGGTGTAGAAATGGATTCTTTTGTGAAAGTAAACCCAAAAA-ACGAAATTGTA 2059
Query 2054 GATTAATGAGAAGACATGAG 2073
|||||||||||| |||||||
Sbjct 2060 GATTAATGAGAAAACATGAG 2079
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 104015529240
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5