BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480805
Length=1632
Score E
Sequences producing significant alignments: (Bits) Value
AT2G16405.1 | Symbols: | Transducin/WD40 repeat-like superfami... 2556 0.0
> AT2G16405.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr2:7105752-7108972 REVERSE LENGTH=1797
Length=1797
Score = 2556 bits (1384), Expect = 0.0
Identities = 1507/1567 (96%), Gaps = 6/1567 (0%)
Strand=Plus/Plus
Query 68 AAATGGAGGAGAAAACCGGATCATCAGAGGTAGAGATCGTTGAGAAAGACGAAGCGAAGA 127
||||||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||
Sbjct 184 AAATGGAGGAGAAAAACGGATCATCAGAGGTAGAGATCGGAGAGAAAGACGAAACGAAGA 243
Query 128 AACAATCAAAGGATCCTGAGTT-TATAAGCTGTATGATGCAGCCATCAACAGCCGAATCA 186
| ||||||||||||| |||||| | |||||||||||||||||||| |||||| || |||
Sbjct 244 AGCAATCAAAGGATCTTGAGTTCT-TAAGCTGTATGATGCAGCCAAAAACAGCTGATTCA 302
Query 187 GATCCTCAGTACATCGGAATCCGCCGGATTCTTCTTCATCGGAAAGCTGAATCTGGTGTT 246
||||| || ||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 303 GATCCACACTACATCGGAATCCGCCGGATTCTTCTTCATCGGAAAGCTGATTCTGGCGTT 362
Query 247 ATCTCTCGCCGTTATGATTGGAGATGCAATGGAAAAGGATATGTTGCATATCGTAATTTC 306
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 363 ATCTCTCGCCGTTATGATTGGAGATGCAATGGAAAAGGATATGTTGCTTATCGTAATTTC 422
Query 307 ATTAGCAAACCTAGAAAATGGGAGAATCTGCGAACGCCTAGTCTCTTAAGTAGTCCAGGA 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 423 ATTAGCAAACCTAGAAAATGGGAGAATCTGCGAACGCCTAGTCTCTTAAGTAGTCCAGGA 482
Query 367 AACAGTGGTCGATGGTTACCGTCTCCGAGTCCTCTTTCCCATCAATTTGAAGCTGAAAGC 426
|||||||||||||||||||| ||||| |||||||| || |||||||||||||||||||||
Sbjct 483 AACAGTGGTCGATGGTTACCTTCTCCAAGTCCTCTCTCGCATCAATTTGAAGCTGAAAGC 542
Query 427 TTTACTTCTAGTAGAGATTTACGGAGTGTTAATCAGGTTTCAAGCCATAGAGCGAGTTTT 486
||||||||||||||||||||| ||||||| |||||||||||||| | |||||||||||||
Sbjct 543 TTTACTTCTAGTAGAGATTTAAGGAGTGTGAATCAGGTTTCAAGTCGTAGAGCGAGTTTT 602
Query 487 AGTTCAAGTTTGAGTGATGGTGATAATTCATATCGTCGTGGTGGTGTTGAACATGCTTAT 546
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 603 AGCTCAAGTTTGAGTGATGGTGATAATTCATATCGTCGTGGTGGTGTTGAACATGCTTAT 662
Query 547 TCGTTTGTTGGAATGCATTGCATCTTCGATCAATGCAAATCTTCTGTTACTGTTCTCAAG 606
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 663 TCTTTTGTTGGAATGCATTGCATCTTCGATCAATGCAAATCTTCTGTTACTGTTCTCAAG 722
Query 607 TTTGGCCACATGAGTTCTGATTTACTTGCATATGGAGCATCAGATGGAAGCTTAACAGTT 666
||||| || |||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 723 TTTGGTCATATGAGTTCTGATATACTTGCATATGGAGCATCAGATGGAAGCTTAACAGTT 782
Query 667 TGTAGTCTCTTAGAAGAGCCTTCTGTCCTCAAGCAGTTGACAGGGCACTCAAAAGATGTC 726
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 783 TGTAGTCTCTTAGAAGAGCCTTCTGTCCTCAAGCAGTTGACAGGTCACTCTAAAGATGTC 842
Query 727 ACAGATTTTGACTTCTCGTCAAACAATCAATACATCGCGTCATCATCACTTGATAAGACA 786
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 843 ACAGATTTTGACTTCTCGTCAAACAATCAATACATCGCGTCATCATCACTTGATAAGACA 902
Query 787 ATACGAGTATGGGAGTTGTCAAGAGGCGTTTGTATTAGAGTTATATATGGAATCTCTCCA 846
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 903 ATACGAGTATGGGAGTTGTCAAGAGGCGTTTGTATTAGAGTTATATATGGAATCTCTCCA 962
Query 847 CAGTTTTGTATCCGTTTCCACCCTGTTAATAACAATTTCCTCTCTGCTGGCAATGCAAAC 906
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 CAGTATTGTATCCGTTTCCACCCTGTTAATAACAATTTCCTCTCTGCTGGCAATGCAAAC 1022
Query 907 AAGGAACTCACGGTGTTCAATTTCAGCACTGGGAGAATTATTAAAAAACTGTTGTTCGAG 966
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1023 AAGGAACTCACGGTGTTCAATTTCAGCACTGGGAGAATTATTAAAAAACTGTTGTTTGAG 1082
Query 967 GATGAGGTGACATCTATGGACCATGATCACACTGGCCAAATAATTTTCTGTGGAGATGGG 1026
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1083 GATGAGGTGACATCTATGGACCATGATCACACTGGCCAAATAATTTTCTGTGGAGATGGG 1142
Query 1027 CAGGGAACTATATATTCAGTTAGCATGGATTCGCATACAGGTTCATTATCCCGGTCTCAT 1086
||||||||| |||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 1143 CAGGGAACTGTATATTCAGTAAGCATGGATTCGCATACAGGGTCATTATCCCGGTCTCAT 1202
Query 1087 CGCCATCGTACTAATCATAAATCCCCTGTCACAACTGTGAAGTACCGAAGCTTCTCCCTC 1146
|| |||||||| ||||| ||||| |||||||| |||||||||||| ||||||||||||||
Sbjct 1203 CGTCATCGTACAAATCACAAATCTCCTGTCACCACTGTGAAGTACAGAAGCTTCTCCCTC 1262
Query 1147 CTGGCATCAGGCCCTGTTCTGCTCACATGTACTCAAGACGGAAACTTGTGTTTCTTTAGT 1206
||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct 1263 CTGGCATCAGGCCCTGTTCTGCTCACATGTACTCAGGACGGAAACTTGAGTTTCTTTAGT 1322
Query 1207 GTTGCTCTTCAGATAAAAGGTTATCTGACTTTGCGTTGCTCCCTCAAATTAGCCCCGCGA 1266
||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1323 GTTGCCCTTCAGATAAAAGGTTATTTGACTTTGCGTTGCTCCCTCAAATTAGCCCCGCGA 1382
Query 1267 ATACACAGAATCCAAGCATCGTTTTGCCCGCTATTATCCCTAGAGAAAGGAGAATACATA 1326
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1383 ATACACAGAATCCAAGCATCGTTTTGCCCGCTATTATCACTAGAGAAAGGAGAATACATA 1442
Query 1327 GTTGCTGGAAGCGAAGACTCGAATGTCTACTTCTATGATCTAACCAAACCAAAGCACACA 1386
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1443 GTTGCTGGAAGCGAAGACTCGAATGTCTACTTCTATGATCTAACCAAACCGAAGCACACA 1502
Query 1387 TGTGTAAACAAGCTACAGGGTCACAGGTTTCCAGTAATGTGTGTTGCGTGGAACCATGGT 1446
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1503 TGTGTAAACAAGCTACAGGGTCACAGGTTTCCAGTAATGTGTGTTGCGTGGAACCATGGG 1562
Query 1447 GAGAACTTGTTGGCTTCGTCTGATTTCTATGGTGTTGTCATTGTATGGAAAAGAGCAAAG 1506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1563 GAGAACTTGTTGGCTTCGTCTGATTTCTATGGTGTTGTCATTGTATGGAAAAGAGCAAAG 1622
Query 1507 ACAAGCTCATAAGGTTTGTCTATAATATTATAAATGAATCTAAATCAGCCATTTTTGCCA 1566
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 1623 ACAAGCTCATAAGGTTTGTCTATAATATTATAAATGAATCTAAATCCGTCATTTTTGCCA 1682
Query 1567 GAAAGGCTTTTGGTTTTGCTTCATCTCTGCGGTATCGCTAATCTCAAA-CTGTGTCAATT 1625
||||||||| ||||| || ||||||||| |||||||||||||||| |||||||||||
Sbjct 1683 CAAAGGCTTTGGGTTTGGCATCATCTCTG---TATCGCTAATCTCAAAACTGTGTCAATT 1739
Query 1626 TAGTTTC 1632
|||||||
Sbjct 1740 TAGTTTC 1746
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80622075270
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5