BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480818
Length=1991
Score E
Sequences producing significant alignments: (Bits) Value
AT2G19160.1 | Symbols: | Core-2/I-branching beta-1,6-N-acetylg... 2630 0.0
AT4G30060.1 | Symbols: | Core-2/I-branching beta-1,6-N-acetylg... 989 0.0
> AT2G19160.1 | Symbols: | Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase
family protein | chr2:8309816-8314008
FORWARD LENGTH=2064
Length=2064
Score = 2630 bits (1424), Expect = 0.0
Identities = 1873/2071 (90%), Gaps = 106/2071 (5%)
Strand=Plus/Plus
Query 1 ttcttccttcttcgtcgtcgtcttcgtcgtcttctGTGTACAGAAATACCTCCATTTTAT 60
||||| ||||||| || ||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2 TTCTTGCTTCTTCTTCCTCGTCTTCGTCGTCTTCTGTGTACAGACATACCTCCATTTTAT 61
Query 61 agagagcgagcaagagaaacaacaaagagagagagatcagaagaagaaACGAATGAAAAT 120
|||||||||| || ||| | | | ||| ||| ||| || || | | | | |||||
Sbjct 62 AGAGAGCGAGAAACAGAGAGATC--AGA-AGA-AGA--AG-AG--G--A-GGA-CAAAAT 108
Query 121 TACCTAGAAGGAAACGTTTCAATACGTGCATAGATATCGATTTCACATATACTCT-A-AG 178
|| ||||||||||||||||||| |||||||||| ||||| ||| |||||||||| | ||
Sbjct 109 TA--TAGAAGGAAACGTTTCAATGCGTGCATAGAAATCGA-TTCTCATATACTCTGAGAG 165
Query 179 TTTC-T-T-TAA-TTT-AG-TAG--C-T--CTC-AA-TTCTTCGTTTGTGGAGAGCTTGG 225
||| | | || ||| | ||| | | ||| || ||||||||| || ||||||||||
Sbjct 166 ATTCATATAGAAGTTTCTGTTAGTTCGTAGCTCTAAGTTCTTCGTTCGTTGAGAGCTTGG 225
Query 226 AAAATTTTCGCGGAGTCT-AATTTGAT-TCCTAGATCTTTGGGT-GAAAGCAAACAAGTT 282
|||||| ||||||||||| |||| | |||||||||||||||| |||| |||||||| |
Sbjct 226 AAAATTGTCGCGGAGTCTGTTTTTGTTCTCCTAGATCTTTGGGTGGAAA-CAAACAAGCT 284
Query 283 CGCGAAGACGAAAAATCTCGCCGTCA-GTGGGATCTGATTCCGTTTGGAAGATTTTTCAG 341
||||||||||| || ||||||||| | ||||||||| |||||||| ||||||||| |||
Sbjct 285 CGCGAAGACGAGAACTCTCGCCGT-ATTTGGGATCTGGTTCCGTTTAGAAGATTTTCCAG 343
Query 342 GTTTCGACTGGTTCTAGCTGCCAAGTGGAATTGACTCATTTTAGCTGAAGAAAC----T- 396
||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |
Sbjct 344 GTTTCGACTGGTTCTAGCTGCTAAGTGGAATCGACTCATTTTAGCTGAAGAAACTTGTTG 403
Query 397 ----T--GTT--A-GG----TTGA----G-G-TGTTGCGGTATGCAATAAAGGTTTTTAT 437
| ||| | || |||| | | |||||| |||||| ||||||||||||||
Sbjct 404 GGAGTGGGTTAAAGGGATATTTGAGGCTGAGTTGTTGCAGTATGCGATAAAGGTTTTTAT 463
Query 438 GAGATGAAGGC-ATTCAAGGGATGGCGTCTAGGCAAAATCAATTATATGCAGTCTTTGCC 496
||||||||||| ||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 464 GAGATGAAGGCAATT-AAGGGATGGCGTCTAGGCAAAATTAATTATATGCAGTCTTTGCC 522
Query 497 TGGGGCTCGCCATCGTGCTCCTACAAGGAAGCC-AGTATGGATCATCGCAGTGCTTTCAC 555
||||||||||||||||||||||||||||||||| | |||||||||| |||||||||||||
Sbjct 523 TGGGGCTCGCCATCGTGCTCCTACAAGGAAGCCTA-TATGGATCATTGCAGTGCTTTCAC 581
Query 556 TGATAGCAATGTTTGTAATTGGTGCTTACATGTTCCCTCATCACAGAAAAGCTGCTTGTT 615
|||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||
Sbjct 582 TGATAGCAATGTTTGTAATTGGTGCTTACATGTTCCCTCATCACAGCAAAGCGGCATGTT 641
Query 616 ATATGTTTTCATCTAAAGGGTGCAAGGGGCTAACTGATTGGCTTCCACCATCACTGAGGG 675
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 642 ATATGTTTTCATCTAAAGGGTGCAAGGGGCTAACTGATTGGCTTCCACCATCACTGAGGG 701
Query 676 AATATTCGGATGACGAAG-TTGCAGCTCGTGTAGTGATTAAG-GAAATTTTGAGCTCCCC 733
||||||||||||||| || |||||||||||||||| ||| || |||||||||||||||||
Sbjct 702 AATATTCGGATGACG-AGATTGCAGCTCGTGTAGTTATT-AGTGAAATTTTGAGCTCCCC 759
Query 734 TCGTGTTATAAAAAAGAGTTCTAAAATTGCATTTATGTTCTTAACTCCGGGTACATTGCC 793
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 760 TCGTGTTATAAAAAAGAGTTCTAAAATTGCATTTATGTTCTTAACTCCTGGTACATTGCC 819
Query 794 TTTTGAAAAGCTATGGGACCTCTTTTTCCAGGGTCATGAGGGGAGATTCTCTGTTTATAT 853
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 820 TTTTGAAAAGCTATGGGACCTCTTTTTCCAGGGTCATGAGGGGAAATTCTCTGTTTATAT 879
Query 854 TCATGCGTCAAAGGATACTCCGGTTCACACCAGTCGTTACTTTGTTAACCGTGAGATTCG 913
||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 880 ACATGCATCAAAGGATACTCCGGTTCACACCAGTCGTTACTTTCTTAACCGTGAGATTCG 939
Query 914 AAGTGACGAGGTGGTCTGGGGTAGAATATCAATGATTGACGCCGAAAGACGTTTGTTGAC 973
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 940 AAGTGACGAGGTGGTCTGGGGTAGAATATCAATGATTGACGCTGAAAGACGTTTGTTGAC 999
Query 974 CAATGCTCTTAGAGATCCGGAAAATCAGCAATTTGTTTTACTCTCTGATAGTTGTGTGCC 1033
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 1000 CAATGCTCTTAGAGATCCTGAAAATCAGCAATTTGTATTACTCTCTGATAGTTGTGTGCC 1059
Query 1034 ACTTCGAAGTTTTGAATACATGTACAACTATATGATGCACAGCAATGTCAGTTATGTTGA 1093
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1060 ACTTCGAAGTTTTGAATACATGTACAACTATATGATGCACAGCAATGTCAGCTATGTTGA 1119
Query 1094 CTGTTTTGACGATCCTGGTCCACATGGAACGGGCAGGCATATGGACCACATGTTGCCGGA 1153
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1120 CTGCTTTGATGATCCTGGTCCACATGGAACGGGCAGGCATATGGACCACATGTTGCCGGA 1179
Query 1154 AATTCCAAGGGAAGATTTTCGAAAGGGTGCACAGTGGTTCTCCATGACGCGTCAGCATGC 1213
|||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 1180 AATTCCAAGGGAAGATTTTCGAAAGGGTGCACAGTGGTTCTCTATGAAGCGTCAGCATGC 1239
Query 1214 TGTGGTAACTGTGGCAGATAATCTTTACTACTCTAAGTTCCGGGACTACTGTGGGCCAGG 1273
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1240 TGTAGTAACTGTGGCAGATAATCTTTACTACTCTAAATTCCGGGACTACTGTGGGCCAGG 1299
Query 1274 TGTAGAGGGCAACAAGAACTGCATCGCGGATGAACACTATCTGCCAACATTCTTTTATAT 1333
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 1300 TGTAGAGGGCAACAAGAACTGCATTGCGGATGAACACTATCTGCCAACATTCTTCTATAT 1359
Query 1334 GCTTGATCCTACTGGCATTGCTAACTGGACTGTGACATATGTTGATTGGTCTGAGAGAAA 1393
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1360 GCTTGATCCTACTGGCATTGCTAACTGGACTGTGACATATGTTGATTGGTCTGAGAGAAA 1419
Query 1394 GTGGCATCCAAGAAAATACATGCCTGAAGATGTCACAAGAGAGTTAATTAAGAACATCAC 1453
||||||||||||||||||||||||||||||| |||| |||||||||||||||||| |
Sbjct 1420 GTGGCATCCAAGAAAATACATGCCTGAAGATATCACGCTCGAGTTAATTAAGAACATCTC 1479
Query 1454 GTCCATTGACGCAGTTTCACGCGTAACAAGTGAGAAAAGGGGAGTAGTATCATGGACGCA 1513
|||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 1480 GTCCATTGACGCAGTTTCACGCGTAACAAGTGAGAAAAACGGAGTAGTATCCTGGACGCA 1539
Query 1514 TTGCATGTGGAATGGAATCAAAAGACCTTGCTATCTCTTTGGAAGGAAGTTTCATGCTGA 1573
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1540 TTGCATGTGGAATGGAATCAAAAGACCTTGCTATCTCTTTGGAAGGAAATTTCATGCTGA 1599
Query 1574 TACACTCGATAAACTGATCGAACTCTTCTCAAACTACATC--GCAT-----AGGGCTTTC 1626
||| |||||||||||||| ||||||||| ||||||||| | |||| |||||||||
Sbjct 1600 TACTCTCGATAAACTGATGGAACTCTTCCCAAACTACA-CAAGCATCGTGTAGGGCTTTC 1658
Query 1627 GAGCAATTTTGATTTATTGATGAAATGCCATGCAAAGGAGGTATTCTTTTGACTCGGATT 1686
|||||||||||||| ||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct 1659 GAGCAATTTTGATTGATTGATGAAATGCAATGCCAAGGAGGTATTCTTTTGACTCGGATT 1718
Query 1687 CTTTGACCAACGTTCTGTTATACCCATGAATCAAATTAAAACTTG-ATGCATTATCATGG 1745
||||| ||||||||| ||||||||||||||||||| |||||||| | ||| ||||||||
Sbjct 1719 CTTTGGCCAACGTTCAGTTATACCCATGAATCAAACTAAAACTTTTAGGCAATATCATGG 1778
Query 1746 AACCCCAAGAAGCTGTATCTCGCTG------C-------GAGCAGAGAAAATC-G---T- 1787
|||||| |||||||||||||| ||| | |||||||||||||| | |
Sbjct 1779 AACCCCTAGAAGCTGTATCTCACTGTAAAGTCCTTTTACGAGCAGAGAAAATCCGAAATC 1838
Query 1788 GTG--ATCTT-GAGAA-GCTTAGGAAGTGTTTTGGGGTTTT-TCATTAAG-TTGGGGGAC 1841
||| ||||| ||||| ||||||||||| ||| |||||||| ||||| | |||||| ||
Sbjct 1839 GTGTGATCTTTGAGAAAGCTTAGGAAGTATTT-GGGGTTTTGTCATTTTGGTTGGGG-AC 1896
Query 1842 GTTGGGGCATTTT-AACTCATCTGTTGTCACTACATCTCATTGTTATTTATAGAATTCTC 1900
|||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1897 GTTGGGACATTTTTAACTCATCTGTTGTCACTACATCTCATTGTTATTTATAGAATTTTC 1956
Query 1901 AGAGTGCCTTTTGGTTTTTCTCTCATTTTGTTGGAACACCTTTGTTGAATATGAAATGAA 1960
||||||| |||| ||||||||||| |||||||||| ||| ||||||||||||||||||||
Sbjct 1957 AGAGTGCTTTTTTGTTTTTCTCTCTTTTTGTTGGAGCAC-TTTGTTGAATATGAAATGAA 2015
Query 1961 AACAAGACATGAGGTTTATACAGTTTAAAAA 1991
||||||| |||||| ||||||||||||||||
Sbjct 2016 AACAAGATATGAGGCTTATACAGTTTAAAAA 2046
> AT4G30060.1 | Symbols: | Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase
family protein | chr4:14689129-14692480
REVERSE LENGTH=2003
Length=2003
Score = 989 bits (535), Expect = 0.0
Identities = 1002/1222 (82%), Gaps = 53/1222 (4%)
Strand=Plus/Plus
Query 421 GCAATAAAGGTTTTTATGAGATGAAGGCA-TTCAAGGGATGGCGTCTAGGCAAAATCA-A 478
|||||||||| ||| |||||||||||||| || || ||||| || |||| || | |
Sbjct 487 GCAATAAAGGATTTGATGAGATGAAGGCAGTT-AAAAGATGGAGTATAGG-GAACTTAGC 544
Query 479 TTATA-T-GC-AGTCTTTGCCTGGGGCTCGCCATCGTG---CTCCTACA--AGGAAG-CC 529
| | | | |||||||||||| ||||| | |||| ||||| || | |||| |
Sbjct 545 GGACATTCCCGTGTCTTTGCCTGGAGCTCGATACCGTGCTCCTCCTCCAGGAAGAAGACG 604
Query 530 AGTATGGATCATCGCAGTGCTTTCACTGAT-AGCAATGTT-TGTAATTGGT-GCTTACAT 586
||||||||||||| |||||||||||||| | | ||||| | | ||| | ||||||||
Sbjct 605 AGTATGGATCATCATGGTGCTTTCACTGATCA-CCATGTTCT-TTATT-ATGGCTTACAT 661
Query 587 GT-TCCCTCATCACAG-AAAAGCTGCTTGTTATATGTTTTCATCTAA-AGGGTGCAAGGG 643
|| | |||||||| || ||| | ||||||||||||| ||||||| || ||| |||||||
Sbjct 662 GTAT-CCTCATCATAGTAAACG-TGCTTGTTATATGATTTCATC-AAGAGGATGCAAGGC 718
Query 644 GCTAACTGATTGGCTTCCACCATCACTGAGGGAATATTCGGATGACGAAG-TTGCAGCTC 702
|| |||||||||||||||| || |||||||||||||| ||||| | || |||||||||
Sbjct 719 TTTAGCTGATTGGCTTCCACCTTCTCTGAGGGAATATTCAGATGATG-AGATTGCAGCTC 777
Query 703 GTGTAGTGATTAAG-GAAATTTTGAGCTCCCCTCGTGTTATAAAAAAGAGTTCTAAAATT 761
||||||| ||| || ||||| ||||| || |||| |||||| | ||||| |||||||||
Sbjct 778 GTGTAGTCATT-AGAGAAATATTGAGTTCACCTCCTGTTATTAGAAAGAACTCTAAAATT 836
Query 762 GCATTT-ATGTTCTTAACTCCGGGTACATTGCCTTTTGAAAAGCTATGGGACCTCTTTTT 820
|| ||| ||||| |||||||| ||||||||||||||||| | ||| |||||| |||||
Sbjct 837 GC-TTTCATGTTTTTAACTCCTGGTACATTGCCTTTTGAGAGGCTTTGGGACAGATTTTT 895
Query 821 CCAGGGTCATGAGGGGAGATTCTCTGTTTATATTCATGCGTCAAAGGATACTCCGGTTCA 880
|| ||| ||||| |||| ||||||||||||||| ||||| |||||||| | || |||||
Sbjct 896 CCTGGGCCATGAAGGGAAATTCTCTGTTTATATACATGCATCAAAGGAAAGGCCAGTTCA 955
Query 881 C-ACCAGTCGTTACTTTGTTAACCGTGAGATTCGAAGTGACGAGGTGGTCTGGGGTAGAA 939
| | ||||||||||||| | ||||| || ||||| ||||| |||||||| ||||| || |
Sbjct 956 CTA-CAGTCGTTACTTTCTCAACCGCGAAATTCGTAGTGATGAGGTGGTGTGGGGAAGGA 1014
Query 940 TATCAATGATTGACGCCGAAAGACGTTTGTTGA-CCAATGCTCTTAGAGATC-CGGAAAA 997
|||||||| ||||||| || ||||| ||||| | | |||||||||||||| | | ||
Sbjct 1015 TATCAATGGTTGACGCAGAGAGACGGTTGTT-AGCTAATGCTCTTAGAGA-CACTTCTAA 1072
Query 998 TCAGCAATTTGTTTTACTCTCTGATAGTTGTGTGCCACTTCGAAGTTTTGAATACATGTA 1057
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 1073 CCAGCAATTTGTTTTACTCTCTGATAGTTGTGTACCACTTCGAAGTTTTGAATACATTTA 1132
Query 1058 CAACTATATGATGCACAGCAATGTCAGTTATGTTGACTGTTTTGACGATCCTGGTCCACA 1117
||| || |||||||||||||| |||| ||||||||||| ||||||||||| |||| |||
Sbjct 1133 CAATTACCTGATGCACAGCAATCTCAGCTATGTTGACTGCTTTGACGATCCAGGTCAACA 1192
Query 1118 TGGAACGGGCAGGCATATGGACCACATGTTGCCGGAAATTCCAAGGGAAG-ATTTTCGAA 1176
|||| | |||||||||||| | ||||||||||| ||||| |||| | ||| |||||||||
Sbjct 1193 TGGAGCAGGCAGGCATATGAATCACATGTTGCCTGAAATCCCAAAG-AAGGATTTTCGAA 1251
Query 1177 AGGGTGCACAGTGGTTCTCCATGACGCGTCAGCATGCTGTGGTAACTGTGGCAGATAATC 1236
||||||||||||||||| |||||| ||| || || ||||| | |||| ||||||| | ||
Sbjct 1252 AGGGTGCACAGTGGTTCACCATGAAGCGACAACACGCTGTAGCAACTATGGCAGACAGTC 1311
Query 1237 TTTACTACTCTAAGTTCCGGGACTACTGTGGGCCAGGTGTAGAGGGCAACAAGAACTGCA 1296
||||||||||||| ||||| || ||||| ||||||||| ||||| ||||||||||||||
Sbjct 1312 TTTACTACTCTAAATTCCGAGATTACTGCGGGCCAGGTATAGAGAACAACAAGAACTGCA 1371
Query 1297 TCGCGGATGAACACTATCTGCCAACATTCTTTTATATGCTTGATCCTACTGGCATTGCTA 1356
| || ||||||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct 1372 TAGCTGATGAACACTATCTGCCAACATTCTTTCATATGCTTGATCCCGGTGGCATTGCTA 1431
Query 1357 ACTGGACTGTGACATATGTTGATTGGTCTGAGAGAAAGTGGCATCCAAGAAA-ATACATG 1415
|||||||||| ||| | ||||||||||||||||||||||||||||| | ||| ||| |||
Sbjct 1432 ACTGGACTGTAACACAAGTTGATTGGTCTGAGAGAAAGTGGCATCCCA-AAACATATATG 1490
Query 1416 CCTGAAGATGTCACA-AGAGAGTTAATTAAGAACATCACGTCCATTGACGCAGTT-TCAC 1473
||||| ||| ||||| | |||||| | || ||| ||||||| | |||| || | | ||
Sbjct 1491 CCTGAGGATATCACACAC-GAGTTACTAAACAACCTCACGTCTACTGACACACTCGT-AC 1548
Query 1474 GCGTAACAAGTGA-GAAAAGGG-GAGTAGTA-TCATGGACGCATTGCATGTGGAATGGAA 1530
|| ||||||| | | ||| || || | | ||||| || ||| |||||||| ||||
Sbjct 1549 ATGTCACAAGTGTTGGGATGGGTGA--AGAAAT-ATGGATGCCTTGTATGTGGAACGGAA 1605
Query 1531 TCAAAAGACCTTGCTATCTC-TTTGGAAGGAAGTTTCATGCTGATACACTCGATAAACTG 1589
|| ||||||| || || || ||||||||||| ||||| | ||||||||||||||||||
Sbjct 1606 TCCAAAGACCGTGTTA-CTTGTTTGGAAGGAAATTTCACCCGGATACACTCGATAAACTG 1664
Query 1590 ATCGAACTCTTCTCAAACTACA 1611
| || ||||||||||| ||||
Sbjct 1665 TTGGATCTCTTCTCAAATTACA 1686
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 98644070925
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5