BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480819
Length=1035
Score E
Sequences producing significant alignments: (Bits) Value
AT2G19150.1 | Symbols: | Pectin lyase-like superfamily protein... 1343 0.0
> AT2G19150.1 | Symbols: | Pectin lyase-like superfamily protein
| chr2:8305100-8307444 FORWARD LENGTH=1020
Length=1020
Score = 1343 bits (727), Expect = 0.0
Identities = 940/1040 (90%), Gaps = 25/1040 (2%)
Strand=Plus/Plus
Query 1 ATGAAGGGGGTGAC-ATTTCACAGTTTTTGTTACTCTTACTTCAAGGTGTGTCTACTTGT 59
|||||||||||||| | |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAAGGGGGTGACGA-TTCACAATTTTTGTTACTCTTACTTCAAGGTGTGTCTACTTGT 59
Query 60 GATCTTATTGGCGTACGGATCCGCGGAAGGGGATGAAAACTCCAGCCAAATAGCTAAAAC 119
||| | |||||| ||||||||||| ||| |||||| || |||||||||||||||||||||
Sbjct 60 GATGTCATTGGCATACGGATCCGCCGAATGGGATGGAAGCTCCAGCCAAATAGCTAAAAC 119
Query 120 TATAATCGTAAATCCAAACGATGCTAGATATTACAAAACGGTCCAAAGTGCAATCGACTC 179
||| ||||| |||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 120 TATCATCGTCAATCCAAACGATGCTAGATATTTCAAAACTGTCCAAAGTGCAATCGACTC 179
Query 180 TATCCCTCTGCAAAACCAAAACTGGATCCGTATCCTCATACG-AAGCGGTATTTACAAAG 238
||||||||||||||||||| | |||||||||||||||||| | || ||||||||||| |
Sbjct 180 TATCCCTCTGCAAAACCAAGATTGGATCCGTATCCTCATAAGTAA-CGGTATTTACAGTG 238
Query 239 AGAAAGTAACAATACC-AGCGGATAAAGGATACATATATATGCAAGGCAGAGGAATTGAA 297
|||||||||||||||| || || |||||||||||||| ||||||||| |||||||||||
Sbjct 239 AGAAAGTAACAATACCTAG-GGGCAAAGGATACATATACATGCAAGGCGGAGGAATTGAA 297
Query 298 AAGACGATAATAGCTTACGGCGATCATCAACAAACCGATACTAGCGCCACTTTCACGTCC 357
|||||||||||||||||||| |||||||||| ||| |||||||||||||||||||||||
Sbjct 298 AAGACGATAATAGCTTACGGTGATCATCAACTCACCAATACTAGCGCCACTTTCACGTCC 357
Query 358 TATGCTAGCAATATCATCATCACTGGAATCACCTTCAAAAATACATATAATATCGCATCG 417
||| |||||||||||||||| |||||||||||||||||||||| ||||||||| ||||||
Sbjct 358 TATCCTAGCAATATCATCATTACTGGAATCACCTTCAAAAATAAATATAATATTGCATCG 417
Query 418 ATTAGCTCTTTAGCAACACCAACCAAACCAGCGGTGGCTGCGAGGATGCTTGGAGACAAA 477
|| |||| ||||||||||||||||||||||||||| |||||||||||| |||
Sbjct 418 ---AG-----TAGC-TCACCAACCAAACCAGCGGTGGCTGCGATGATGCTTGGAGATAAA 468
Query 478 TATGCAATAATCGATTCTAGTTTTGATGGTTTTCAAGATACACTTTGCGATGGTTTA-GG 536
||||||||||||||||| ||||||||||||||||||||||| |||| ||| | ||| ||
Sbjct 469 TATGCAATAATCGATTCAAGTTTTGATGGTTTTCAAGATACGCTTTACGA-CGATTACGG 527
Query 537 CAGACACTACTACAAACGATGTGTTATCTCCGGTGGCATAGATTTCATTTTTGGCTATGC 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 528 CAGACACTACTACAAACGATGTGTTATCTCCGGTGGCATAGATTTCATTTTTGGCGGTGC 587
Query 597 CCAATCCATTTTTGAGGGGTGTACGTTGAAATTATCGATCGGAATCTACCCACCAAACGA 656
|||||||||||||||||| |||||||||||| || | | |||||||||||||| || ||
Sbjct 588 CCAATCCATTTTTGAGGGATGTACGTTGAAACTAAGGGTTGGAATCTACCCACCGAATGA 647
Query 657 ACCGTATGCAACGATAACGGCACAAGGAAGGCAGTCGCCAATGGATAAAGGAGGGTTCGT 716
| ||||| |||||||||||||||||||||| | ||||| | |||||| |||||||||||
Sbjct 648 AGTGTATGGAACGATAACGGCACAAGGAAGGGACTCGCCGACGGATAAGGGAGGGTTCGT 707
Query 717 GTTTAAGGACTGCACTGTTATTGGAAATGGCAAGGTTAAGGCGTTACTGGGACGAGCGTG 776
|||||||||||||||||||| ||| || || || |||||||||||||||||||||||
Sbjct 708 GTTTAAGGACTGCACTGTTA-TGGGAA--GC--GG-CAAGGCGTTACTGGGACGAGCGTG 761
Query 777 GGAACCTTATGCACGTGTCATCTTTTACCATTCTAAT-TTTGGCGACGCTATTTTGCCAA 835
| || ||||| ||||||| |||||||||| |||| || ||| ||||| |||||||||||
Sbjct 762 GAAATCTTATTCACGTGTTATCTTTTACCGTTCT-ATGTTTAGCGACAATATTTTGCCAA 820
Query 836 TTGGTTGGGATGCTTGGAACGGAAAAGGACAAGAGGAGCATATAACGTTTGTGGAGTTTG 895
||||||||||||||||||| | |||||| ||||||| |||||||||||||||||||||||
Sbjct 821 TTGGTTGGGATGCTTGGAAAGCAAAAGGCCAAGAGGGGCATATAACGTTTGTGGAGTTTG 880
Query 896 GTTGCACTGGAGTTGGAGCGGACATGTCAAAGAGAGTGTCATGGCTCAGGAAGGCAAGTG 955
||||||||||||||||||| |||| ||||||||||||| ||||||||| |||||||||||
Sbjct 881 GTTGCACTGGAGTTGGAGCAGACACGTCAAAGAGAGTGCCATGGCTCACGAAGGCAAGTG 940
Query 956 AAAAAGACGTTCTGCAATTTACGAATCTTACCTTTATTGACGAAGAAGGTTGGCTCAGTA 1015
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 941 AAAAAGACGTTCTTCAGTTTACGAATCTTACCTTTATTGACGAAGAAGGTTGGCTCAGTA 1000
Query 1016 GGCTTCCCATCAAATTTTAG 1035
||||||||||||||||||||
Sbjct 1001 GGCTTCCCATCAAATTTTAG 1020
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50736488470
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5