BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg480819 Length=1035 Score E Sequences producing significant alignments: (Bits) Value AT2G19150.1 | Symbols: | Pectin lyase-like superfamily protein... 1343 0.0 > AT2G19150.1 | Symbols: | Pectin lyase-like superfamily protein | chr2:8305100-8307444 FORWARD LENGTH=1020 Length=1020 Score = 1343 bits (727), Expect = 0.0 Identities = 940/1040 (90%), Gaps = 25/1040 (2%) Strand=Plus/Plus Query 1 ATGAAGGGGGTGAC-ATTTCACAGTTTTTGTTACTCTTACTTCAAGGTGTGTCTACTTGT 59 |||||||||||||| | |||||| |||||||||||||||||||||||||||||||||||| Sbjct 1 ATGAAGGGGGTGACGA-TTCACAATTTTTGTTACTCTTACTTCAAGGTGTGTCTACTTGT 59 Query 60 GATCTTATTGGCGTACGGATCCGCGGAAGGGGATGAAAACTCCAGCCAAATAGCTAAAAC 119 ||| | |||||| ||||||||||| ||| |||||| || ||||||||||||||||||||| Sbjct 60 GATGTCATTGGCATACGGATCCGCCGAATGGGATGGAAGCTCCAGCCAAATAGCTAAAAC 119 Query 120 TATAATCGTAAATCCAAACGATGCTAGATATTACAAAACGGTCCAAAGTGCAATCGACTC 179 ||| ||||| |||||||||||||||||||||| |||||| |||||||||||||||||||| Sbjct 120 TATCATCGTCAATCCAAACGATGCTAGATATTTCAAAACTGTCCAAAGTGCAATCGACTC 179 Query 180 TATCCCTCTGCAAAACCAAAACTGGATCCGTATCCTCATACG-AAGCGGTATTTACAAAG 238 ||||||||||||||||||| | |||||||||||||||||| | || ||||||||||| | Sbjct 180 TATCCCTCTGCAAAACCAAGATTGGATCCGTATCCTCATAAGTAA-CGGTATTTACAGTG 238 Query 239 AGAAAGTAACAATACC-AGCGGATAAAGGATACATATATATGCAAGGCAGAGGAATTGAA 297 |||||||||||||||| || || |||||||||||||| ||||||||| ||||||||||| Sbjct 239 AGAAAGTAACAATACCTAG-GGGCAAAGGATACATATACATGCAAGGCGGAGGAATTGAA 297 Query 298 AAGACGATAATAGCTTACGGCGATCATCAACAAACCGATACTAGCGCCACTTTCACGTCC 357 |||||||||||||||||||| |||||||||| ||| ||||||||||||||||||||||| Sbjct 298 AAGACGATAATAGCTTACGGTGATCATCAACTCACCAATACTAGCGCCACTTTCACGTCC 357 Query 358 TATGCTAGCAATATCATCATCACTGGAATCACCTTCAAAAATACATATAATATCGCATCG 417 ||| |||||||||||||||| |||||||||||||||||||||| ||||||||| |||||| Sbjct 358 TATCCTAGCAATATCATCATTACTGGAATCACCTTCAAAAATAAATATAATATTGCATCG 417 Query 418 ATTAGCTCTTTAGCAACACCAACCAAACCAGCGGTGGCTGCGAGGATGCTTGGAGACAAA 477 || |||| ||||||||||||||||||||||||||| |||||||||||| ||| Sbjct 418 ---AG-----TAGC-TCACCAACCAAACCAGCGGTGGCTGCGATGATGCTTGGAGATAAA 468 Query 478 TATGCAATAATCGATTCTAGTTTTGATGGTTTTCAAGATACACTTTGCGATGGTTTA-GG 536 ||||||||||||||||| ||||||||||||||||||||||| |||| ||| | ||| || Sbjct 469 TATGCAATAATCGATTCAAGTTTTGATGGTTTTCAAGATACGCTTTACGA-CGATTACGG 527 Query 537 CAGACACTACTACAAACGATGTGTTATCTCCGGTGGCATAGATTTCATTTTTGGCTATGC 596 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 528 CAGACACTACTACAAACGATGTGTTATCTCCGGTGGCATAGATTTCATTTTTGGCGGTGC 587 Query 597 CCAATCCATTTTTGAGGGGTGTACGTTGAAATTATCGATCGGAATCTACCCACCAAACGA 656 |||||||||||||||||| |||||||||||| || | | |||||||||||||| || || Sbjct 588 CCAATCCATTTTTGAGGGATGTACGTTGAAACTAAGGGTTGGAATCTACCCACCGAATGA 647 Query 657 ACCGTATGCAACGATAACGGCACAAGGAAGGCAGTCGCCAATGGATAAAGGAGGGTTCGT 716 | ||||| |||||||||||||||||||||| | ||||| | |||||| ||||||||||| Sbjct 648 AGTGTATGGAACGATAACGGCACAAGGAAGGGACTCGCCGACGGATAAGGGAGGGTTCGT 707 Query 717 GTTTAAGGACTGCACTGTTATTGGAAATGGCAAGGTTAAGGCGTTACTGGGACGAGCGTG 776 |||||||||||||||||||| ||| || || || ||||||||||||||||||||||| Sbjct 708 GTTTAAGGACTGCACTGTTA-TGGGAA--GC--GG-CAAGGCGTTACTGGGACGAGCGTG 761 Query 777 GGAACCTTATGCACGTGTCATCTTTTACCATTCTAAT-TTTGGCGACGCTATTTTGCCAA 835 | || ||||| ||||||| |||||||||| |||| || ||| ||||| ||||||||||| Sbjct 762 GAAATCTTATTCACGTGTTATCTTTTACCGTTCT-ATGTTTAGCGACAATATTTTGCCAA 820 Query 836 TTGGTTGGGATGCTTGGAACGGAAAAGGACAAGAGGAGCATATAACGTTTGTGGAGTTTG 895 ||||||||||||||||||| | |||||| ||||||| ||||||||||||||||||||||| Sbjct 821 TTGGTTGGGATGCTTGGAAAGCAAAAGGCCAAGAGGGGCATATAACGTTTGTGGAGTTTG 880 Query 896 GTTGCACTGGAGTTGGAGCGGACATGTCAAAGAGAGTGTCATGGCTCAGGAAGGCAAGTG 955 ||||||||||||||||||| |||| ||||||||||||| ||||||||| ||||||||||| Sbjct 881 GTTGCACTGGAGTTGGAGCAGACACGTCAAAGAGAGTGCCATGGCTCACGAAGGCAAGTG 940 Query 956 AAAAAGACGTTCTGCAATTTACGAATCTTACCTTTATTGACGAAGAAGGTTGGCTCAGTA 1015 ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| Sbjct 941 AAAAAGACGTTCTTCAGTTTACGAATCTTACCTTTATTGACGAAGAAGGTTGGCTCAGTA 1000 Query 1016 GGCTTCCCATCAAATTTTAG 1035 |||||||||||||||||||| Sbjct 1001 GGCTTCCCATCAAATTTTAG 1020 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 50736488470 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5