BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480820
Length=2579
Score E
Sequences producing significant alignments: (Bits) Value
AT2G19130.1 | Symbols: | S-locus lectin protein kinase family ... 3637 0.0
> AT2G19130.1 | Symbols: | S-locus lectin protein kinase family
protein | chr2:8293682-8296275 FORWARD LENGTH=2594
Length=2594
Score = 3637 bits (1969), Expect = 0.0
Identities = 2330/2504 (93%), Gaps = 26/2504 (1%)
Strand=Plus/Plus
Query 89 tctcatggtttcgttcttgaaactctcttccttcttcttcctctgtttcttcATCCATGG 148
|||||||||||||||||||| ||| |||||||||| ||| |||| ||||||||||||||
Sbjct 104 TCTCATGGTTTCGTTCTTGACCCTCACTTCCTTCTTTTTCATCTGCTTCTTCATCCATGG 163
Query 149 CTCTTCCGCCGTCGACACAATCTCCGGCGACTTTACTCTCTCCGGTGATCAGACAATTGT 208
||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||
Sbjct 164 CTCTTCCGCCGTCGACACAATCTCCGGCGACTTTACTCTCTCCGGCGACCAGACTATTGT 223
Query 209 CTCCTCCGACGGAACTTACGAAATGGGTTTCTTTAAACCAGGTTCTTCTTCAAACTTCTA 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 224 CTCCTCCGACGGAACTTACGAAATGGGTTTCTTTAAACCAGGTTCTTCTTCAAACTTCTA 283
Query 269 TATAGGTCTGTGGTATAAGCAACTCTCTCAAACCGTCCTCTGGGTAGCCAATCGAGACAA 328
|||||| |||||||||||||||||||||||||| | || ||||||||||||||||||||
Sbjct 284 CATAGGTATGTGGTATAAGCAACTCTCTCAAACCATACTATGGGTAGCCAATCGAGACAA 343
Query 329 ACCAGTCTT-TAACAAGAACTCATCTGTTCTCAAAATCTCCAACGGAAACTTGATCTTAC 387
| |||| || |||| |||||||| ||| |||||||||||||||||||||| ||| |||
Sbjct 344 AGCAGT-TTCCGACAAAAACTCATCAGTTTTCAAAATCTCCAACGGAAACTTAATCCTAC 402
Query 388 TCGACGGTAATAACCAGACTCCGGTTTGGTCCACCGGTCTCAACTCCACCTCTTCCTCTG 447
||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 403 TCGACGGTAATTACCAGACTCCGGTTTGGTCCACCGGTCTCAACTCCA---CTTCCTCTG 459
Query 448 TTTCTGCTCTTGAAGCGGTTTTGCTCGACGACGGCAATCTTGTTCTCAGAACCAGCGGTT 507
|||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |
Sbjct 460 TTTCTGCTCTTGAAGCGGTTTTGCAAGACGACGGCAATCTTGTTCTCAGAACCGGCGGCT 519
Query 508 CCGGCTCATCATCCAAC-AAGTTGTGGCAAAGCTTCGATCACCCTGGTA-ACACGTGGC- 564
| ||| |||| | ||| | |||||||||||||| |||||||| || | |||||||||
Sbjct 520 CTAGCTTATCAGCTAACGTA-TTGTGGCAAAGCTTTGATCACCC-GGGAGACACGTGGCT 577
Query 565 TCCCTGGAATGAATATCCGGTTAGACAAACGAACCGGAAAGAGCCAACGACTCACGTCGT 624
|||| ||| |||| ||||||||||| |||||||||||||||||||| |||||||| ||||
Sbjct 578 TCCC-GGAGTGAAGATCCGGTTAGATAAACGAACCGGAAAGAGCCAGCGACTCACTTCGT 636
Query 625 GGAAGAGTCTCGAAGATCCATCACCAGGTTTGTTCTCTCTCGTGCTAGACGAGTCCACAG 684
|||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct 637 GGAAGAGTCTCGAAGATCCATCACCAGGTTTGTTCTCTCTCGAGCTAGACGAATCCACAG 696
Query 685 CTTACAAAATCCTCTGGAACGGATCTAATGAGTACTGGTCAAGTGGTCCTTGGAATAATC 744
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 697 CTTACAAAATTCTCTGGAACGGATCTAATGAGTACTGGTCAAGTGGTCCTTGGAACCCTC 756
Query 745 AGAGCAGGATCTTTGATTCGG-TCCCTGAAATGAGACTCAATTACATCTACAACTTCAGC 803
||||||||||||||||||||| |||| || ||||||||||||||||||||||||||||||
Sbjct 757 AGAGCAGGATCTTTGATTCGGTTCCC-GAGATGAGACTCAATTACATCTACAACTTCAGC 815
Query 804 TTTTTCTCTAACTCCACGGAGTCATACTTCACGTACTCGATATATAACCACTTGAACGTG 863
|||||||||||| |||| || ||||||||||||||||| || |||||||| |||||||||
Sbjct 816 TTTTTCTCTAACACCACAGACTCATACTTCACGTACTCTATCTATAACCAGTTGAACGTG 875
Query 864 TCCCGTTTCGTCATGGACGTGTCGGGACAGATCAAACAGTTCACTTGGTTAGACGGAAAC 923
|| || ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 876 TCACGCTTCGTCATGGACGTGTCTGGACAGATCAAACAGTTCACTTGGTTAGAAGGAAAC 935
Query 924 AAGGAC-TGGAACTTGTTCTGGTCTCAACCTCGGCAACAATGTCAGGTCTATAGGTATTG 982
|||| | |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 936 AAGG-CATGGAACTTGTTCTGGTCTCAACCTCGACAACAATGTCAGGTCTATAGGTATTG 994
Query 983 TGGCTCCTTTGGCGTTTGCAGTGACAAGTCTGAGCCTTTTTGCCGATGTCCGCAAGGGTT 1042
|||||||||||| ||||||||||||||||||||||||||||||| || || ||||||||
Sbjct 995 TGGCTCCTTTGGAATTTGCAGTGACAAGTCTGAGCCTTTTTGCCGTTGCCCACAAGGGTT 1054
Query 1043 TAGGCCTAAGTCACAGAAAGATTGGGGCTTGAAGGATTACTCTGCAGGCTGCGAAAGAAA 1102
|||||||| ||| |||||||| |||| |||||||||||||||||||||||||| |||||
Sbjct 1055 TAGGCCTATGTCGCAGAAAGACTGGGACTTGAAGGATTACTCTGCAGGCTGCGTTAGAAA 1114
Query 1103 GACTGAACTACAATGCTCTCGTGGAGACATTAACCAGTTTTTTCCTCTTCCAAACATGAA 1162
|||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 1115 GACTGAACTACAATGCTCTCGTGGAGACATTAACCAGTTTTTTCGTCTTCCGAACATGAA 1174
Query 1163 ACTAGCTGATAATTCAGAGGAATT-ACCGAGAACGAGTCTGAGTATTTGTGCCTCTGCTT 1221
|||||||||||||||||||| ||| | | ||||| ||||| |||||||||||||||||||
Sbjct 1175 ACTAGCTGATAATTCAGAGGTATTGA-CAAGAACTAGTCTTAGTATTTGTGCCTCTGCTT 1233
Query 1222 GCCAAGGGGATTGTTCTTGTAAGGCTTATGCACATGATGAAGGCTCGAACAAATGCTTGG 1281
||||||| |||||||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct 1234 GCCAAGGAGATTGTTCTTGTAAGGCTTATGCATATGATGAAGGCTCGAGCAAATGCTTGG 1293
Query 1282 TTTGGGT-TAAAGATGTCTTGAATCTTCAGCAACTTGAAGATGATAACAATGAGGGGAAT 1340
||| ||| |||||||||||||||||| ||||||||||||||||| |||| |||||||||
Sbjct 1294 TTT-GGTCTAAAGATGTCTTGAATCTACAGCAACTTGAAGATGAAAACAGTGAGGGGAAC 1352
Query 1341 ACGTTTTATCTTAGACTCGCTGCTTCTGACATTCCTAATGTT--T-CTTCCGGTAAAAGT 1397
| ||||||||||||||||||||||||||| ||||||||||| | |||| ||||| |||
Sbjct 1353 ATATTTTATCTTAGACTCGCTGCTTCTGACGTTCCTAATGTTGGTGCTTCGGGTAAGAGT 1412
Query 1398 AACAATAAAGGGATGATATTTGGTGCGGTTCTAGGCTCGTTAGGAGTAATAGTCCTTGTT 1457
||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1413 AACAATAAAGGTTTGATATTTGGGGCGGTTCTAGGCTCGTTAGGAGTAATAGTCCTTGTT 1472
Query 1458 CTGTTGGTGGTAATCTTGATCTTAAGGTACAAGAGGAGGAAGAGAATGAGAGGTGAGAAG 1517
||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 1473 CTGTTGGTGGTAATCTTGATCTTAAGGTACAGGAGGAGGAAGAGAATGAGAGGAGAGAAG 1532
Query 1518 GGTGATGGTACATTG-GCTGCGTTTAGCTATAGAGAAATACAGAATGCGACGAAGAATTT 1576
||||||||||||||| | ||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 1533 GGTGATGGTACATTGAG-TGCGTTTAGCTATAGAGAATTACAGAATGCGACAAAGAATTT 1591
Query 1577 CGCGGAGAAGTTAGGAGGAGGAGGTTTTGGTTCGGTGTTCAAAGGGGTTTTACCGGATTC 1636
| |||| |||||||||||||||||||||||||| ||||||||||| | ||||||||||||
Sbjct 1592 CTCGGATAAGTTAGGAGGAGGAGGTTTTGGTTCAGTGTTCAAAGGTGCTTTACCGGATTC 1651
Query 1637 TAGTGATATAGCGGTGAAGAGGCTTGAGAGTATTAGCCAAGGGGAGAAGCAGTTTAGGAC 1696
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1652 TAGTGATATAGCGGTGAAGAGGCTTGAGGGTATTAGCCAAGGGGAGAAGCAGTTTAGGAC 1711
Query 1697 GGAAGTAGTGACGATAGGAACGATACAACACGTAAATCTAGTGAGGCTTCGCGGGTTTTG 1756
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 1712 GGAAGTAGTGACGATAGGAACGATCCAACACGTTAATCTAGTGAGGCTTCGCGGGTTTTG 1771
Query 1757 TTCCGAAGGAAACAAGAAATTGCTGGTTTATGATTACATGCCTAACGGTTCTTTGGATGC 1816
|||||||||| |||||||||| |||||||||||||||||||||| |||||||||||| |
Sbjct 1772 CTCCGAAGGAAGCAAGAAATTGTTGGTTTATGATTACATGCCTAATGGTTCTTTGGATTC 1831
Query 1817 TCATCTCTTCTTTAACCAAGTTGAAGAAAAGGTCGTCCTCGGGTGGAAACTTCGGTTCCA 1876
|||||| ||||| |||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 1832 TCATCTTTTCTTAAACCAAGTTGAAGAAAAGATCGTCCTCGGGTGGAAACTGCGGTTCCA 1891
Query 1877 AATCGCGTTAGGGACAGCTAGAGGATTAGCTTATCTACATGACGAATGCAGAGACTGTAT 1936
||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||
Sbjct 1892 AATCGCGTTAGGGACAGCTAGAGGATTAGCTTATCTACACGATGAATGTAGAGACTGTAT 1951
Query 1937 CATTCACTGCGATATAAAACCCGAAAACATTTTGTTAGATTCACAGTTTTGTCCCAAAGT 1996
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1952 CATTCACTGCGATATAAAACCCGAAAACATTTTGTTAGATTCACAGTTTTGTCCCAAAGT 2011
Query 1997 TGCTGATTTCGGTTTAGCCAAGCTCGTGGGTCGAGATTTTAGCAGGGTTTTGACCACAAT 2056
||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 2012 TGCTGATTTCGGTTTGGCCAAGCTCGTGGGTCGAGATTTTAGTAGGGTTTTGACGACAAT 2071
Query 2057 GAGAGGCACAAGAGGCTATCTTGCACCTGAATGGATCTCGGGAGTTGCGATAACAGCGAA 2116
||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 2072 GAGAGGCACAAGAGGGTATCTTGCACCGGAATGGATATCGGGAGTTGCGATAACAGCGAA 2131
Query 2117 AGCTGATGTTTACAGCTACGGTATGATGCTATTCGAGCTTGTTTCCGGGAGAAGAAACAC 2176
||| ||||||||||||||||| |||||| |||| ||||||||||||||||| ||||||||
Sbjct 2132 AGCCGATGTTTACAGCTACGGGATGATGTTATTTGAGCTTGTTTCCGGGAGGAGAAACAC 2191
Query 2177 GGAGCAATCAGAGAACGAGAAAGTCAGATTCTTTCCGAGTTGGGCCGCGACCATACTCAC 2236
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2192 AGAGCAATCAGAGAACGAGAAAGTCAGATTCTTTCCAAGTTGGGCCGCGACCATACTCAC 2251
Query 2237 CAAAGATGGAGACATCCGCTCGCTACTTGACCCTAGACTAGAGGGCGATGAAGTGGACAT 2296
||||||||||||||| ||||| || ||||||||||||||||||| |||| |||||||||
Sbjct 2252 CAAAGATGGAGACATTCGCTCACTGGTTGACCCTAGACTAGAGGGAGATGCAGTGGACAT 2311
Query 2297 AGAGGAGCTCACGAGAGCTTGTAAAGTGGCGTGTTGGTGCATACAAGACGAAGAGAGTCA 2356
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2312 AGAGGAGGTCACGAGAGCTTGTAAAGTGGCGTGTTGGTGCATACAAGACGAAGAGAGTCA 2371
Query 2357 TAGGCCAGCGATGAGCCAAATTGTTCAGATTCTTGAAGGTGTTTTGGAAGTGAATCCACC 2416
||||||||||||||| ||| |||||||||||||||||||||| |||||||||||||||||
Sbjct 2372 TAGGCCAGCGATGAGTCAAGTTGTTCAGATTCTTGAAGGTGTCTTGGAAGTGAATCCACC 2431
Query 2417 GCCTTTTCCAAGATCAATTCAAGCTTTAGTCGATACCGATGAAGATGTGGTCTTCTTTAC 2476
|||||||||||||||||||||||||||||||| | |||||||||| ||||||||||||||
Sbjct 2432 GCCTTTTCCAAGATCAATTCAAGCTTTAGTCGTTTCCGATGAAGACGTGGTCTTCTTTAC 2491
Query 2477 TGAGTCGTCATCGTCGTCAAGCCATAATTCTTCACAGAAACACA-GCCATTCTTCTTCTT 2535
|||||||||||| |||||||||||||||||||||||||| |||| || ||||||||||||
Sbjct 2492 TGAGTCGTCATCTTCGTCAAGCCATAATTCTTCACAGAATCACAAGC-ATTCTTCTTCTT 2550
Query 2536 CCTCCTCTTCCAAGAAAACGACCAACAATGACTCTTCGGCTTAG 2579
| || ||||||||||||| ||||||| || ||||||| ||||||
Sbjct 2551 CTTCTTCTTCCAAGAAAATGACCAACGATAACTCTTCTGCTTAG 2594
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 128026038536
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5