BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480824
Length=1157
Score E
Sequences producing significant alignments: (Bits) Value
AT2G19080.1 | Symbols: | metaxin-related | chr2:8262750-826496... 1635 0.0
> AT2G19080.1 | Symbols: | metaxin-related | chr2:8262750-8264964
FORWARD LENGTH=1234
Length=1234
Score = 1635 bits (885), Expect = 0.0
Identities = 992/1043 (95%), Gaps = 9/1043 (1%)
Strand=Plus/Plus
Query 1 CTTCTTCTTCTTTAGACCCGAGCTCTCTCACACAC-A--AACGGTAATGGAAGGCGATCA 57
||||||||||||| |||| |||||||| |||| || | || ||||||||||||||||
Sbjct 23 CTTCTTCTTCTTTTGACCAGAGCTCTCACACATACGAGTCACTATAATGGAAGGCGATCA 82
Query 58 AGAGACGGAGGTTTATACTTTGGTCGCAAGGAAACCTTCCTTCGATCTCCCAACAGCTTG 117
||||||| | |||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 83 AGAGACGAATGTTTATACTTTGGTGGCAAGGAAGCCTTCCTTCGATCTCCCAACAGCTTG 142
Query 118 CCCTAATTGTCTTCCTGCTTACATATACCTGAAATTAGCCCAGCTTCCTTTTGAACTTGC 177
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 143 CCCTAATTGTCTTCCTGCTTATATATACCTGAAATTAGCCCAGCTACCTTTTGAACTTGC 202
Query 178 TTTCAATTCAACCTTCCCTGATTCAGATGAACTGCCGTACTTTGAAAGTGGA-ACATATG 236
|||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 203 GTTCAATTCAACCTTCCCTGATTCAGATGAACTGCCGTACTTTGAAAGT-GATACATATG 261
Query 237 TTGCATATAACAATGAAGATGGAGGAGTAATTGAAAAACTGAAGAAAGATGGGATTGTTA 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 262 TTGCATATAACAATGAAGATGGAGGAGTAATTGAAAAACTGAAGAAAGATGGGATTGTTA 321
Query 297 ATCTGGACTCTCAGCTCCAGTCTCTTCCGGATTATTTGTCGTTGAAGGCTCTTATTGTTT 356
|||||||||||||||| ||||||||| |||||||||| || ||||||||||||||||| |
Sbjct 322 ATCTGGACTCTCAGCTACAGTCTCTTTCGGATTATTTATCTTTGAAGGCTCTTATTGTGT 381
Query 357 CTTGGCTGGAAGAAGCACTTACCTATGAGATATGGGTTGGTACCGAGGGGATTTCTAC-T 415
||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 382 CTTGGCTAGAAGAAGCGCTTACCTATGAGATATGGGTTGGTACCGAGGGGATATCTACAT 441
Query 416 ACGAAAATCTACTATTCAGATCTTCCTTGGGTGATCAGTAAGGTCCTGTTTTATAAGCAG 475
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 442 -CGAAAATCTACTATTCAGATCTTCCTTGGGTGATCAGCAAGGTCCTGTTTTATAAGCAG 500
Query 476 ACATACATGGCCAAGAACCGTTTAGGAATCACTAAAGAGAACACAGAGCAAAGAGAAAAA 535
|||||| |||| |||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct 501 ACATACTTGGCAAAGAACCGTTTAGGAATCACCAAAGAGAACGCAGAGCAAAGAGAAAAA 560
Query 536 CAGATATACAAGAGAGCAAGTGAGGCATATGAAGCTTTGTCGACTAGGTTAGGCGAGCAG 595
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 561 CAGATATACAAGAGAGCAAGTGAGGCATATGAAGCTTTGTCGACTAGGTTAGGTGAGCAG 620
Query 596 AAGTTTCTCTTTGAAGACAGGCCATCGAGTTTGGATGCTTTCTTACTCTCGCACATACTT 655
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 621 AAGTTTCTCTTTGAAGACAGGCCATCGAGTTTGGATGCTTTCTTACTCTCGCACATACTT 680
Query 656 TTTATTATCCAAGCATTACCGGTAACATCTA-TGCTTCGGTGCAAACTTCTGGAACATAG 714
||||| |||||||| ||||| || ||||| | ||||||||||||||||||||||||||||
Sbjct 681 TTTATAATCCAAGCGTTACCAGTTACATC-AGTGCTTCGGTGCAAACTTCTGGAACATAG 739
Query 715 TAATCTTGTGAGATATGCTGAGAAACTTAAGTCAGAGTTCCTTGAAGCTTCTTCTTCATC 774
|||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 740 TAATCTTGTGCGATATGCTGAGAAACTTAAGTCAGAGTTCCTTGAAGCCTCTTCTTCATC 799
Query 775 TCCTTCACCTCCACTTCACTCATTCCCCTCCTCATTTCCAAGAAAGAGTTCGAAGCcaaa 834
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 800 TCCTTCACCTCCACTTCACTCATTCCCTTCCTCATTTCCAAGAAAGAGTTCGAAGCCAAA 859
Query 835 gagcaaaccaaaggtggaaaagaccgaagaggagaaaaaatttaagaaaagagcaagaTT 894
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 860 GAGCAAACCAAAGGTAGAAAAGACCGAAGAGGAGAAAAAATTTAAGAAAAGAGCAAGGTT 919
Query 895 CTTTCTAGCTGCTCAGTTTCTAGCCGTCGTCATTTACGTATCAGTAATGGGAGGAGGTAG 954
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 920 CTTTCTAGCTGCTCAGTTTCTAGCTGTCGTCATTTACGTATCAGTGATGGGAGGAGGTAG 979
Query 955 TTCTGAGGAACTGGAGTATGAAGATGAAGATGACTAAACTAAAGCTTCTCTTATTAAATG 1014
|||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 980 TTCTGATGAACTGGAGTATGAAGATGAAGATGACTAAACTAAAGCTTTTCTTATTAAATG 1039
Query 1015 GACCGGTAACTCTCAGGCAAACT 1037
|||||||||||||||||| ||||
Sbjct 1040 GACCGGTAACTCTCAGGCGAACT 1062
Score = 87.9 bits (47), Expect = 2e-16
Identities = 115/143 (80%), Gaps = 24/143 (17%)
Strand=Plus/Plus
Query 1037 TAATCTCTACGC-ttttt-ttCTTGAACTCTTGGTTATGGAGCGGATTACAGATGTGAGA 1094
|||||||||||| ||||| ||||||||||||| ||||||||| ||| |||||||||||||
Sbjct 1092 TAATCTCTACGCTTTTTTCTTCTTGAACTCTTAGTTATGGAGAGGA-TACAGATGTGAGA 1150
Query 1095 -TTAGT--C---------G---T----TTTT-GTTCTGAAGGAGATTCTATTGGCTTTTA 1134
||||| | | | |||| ||||||||||||| || ||||||||||
Sbjct 1151 TTTAGTCACATTATAATGGTTTTCGACTTTTCGTTCTGAAGGAGA-GCTTTTGGCTTTTA 1209
Query 1135 TATAAATTTCATTGGTTTTTAAG 1157
|||||||||||||||||||||||
Sbjct 1210 TATAAATTTCATTGGTTTTTAAG 1232
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56776816395
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5