BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480825
Length=1514
Score E
Sequences producing significant alignments: (Bits) Value
AT2G19070.1 | Symbols: SHT | spermidine hydroxycinnamoyl transf... 2309 0.0
AT2G19060.1 | Symbols: | SGNH hydrolase-type esterase superfam... 737 0.0
> AT2G19070.1 | Symbols: SHT | spermidine hydroxycinnamoyl transferase
| chr2:8260038-8261985 REVERSE LENGTH=1530
Length=1530
Score = 2309 bits (1250), Expect = 0.0
Identities = 1433/1520 (94%), Gaps = 17/1520 (1%)
Strand=Plus/Plus
Query 1 AAAAGAAAGGGTGTTTGTGTTATGGCTCCCATAATTTTTAGAAAATCTTACACTATAGTA 60
||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 7 AAAAGAAAGGGGGTTTGTGTTATGGCTCCCATAACTTTTAGAAAATCTTACACTATAGTA 66
Query 61 CCGGCCGAACCAACGTGGACCGGTCGGTTTCCAC-TAGCCGAGTGGGATCAAGTTGGTAC 119
||||||||||||||||||| |||| ||||||| | |||||||||||||||||||||||||
Sbjct 67 CCGGCCGAACCAACGTGGAGCGGTAGGTTTCC-CTTAGCCGAGTGGGATCAAGTTGGTAC 125
Query 120 AATAACTCACATTCCCACCCTTTA-TTTCTATGATAAGCCATCTGAATCTTTCCAAGGCA 178
||| |||||||||||||||||||| ||| || || |||||||||||||||||||||||||
Sbjct 126 AATTACTCACATTCCCACCCTTTACTTT-TACGACAAGCCATCTGAATCTTTCCAAGGCA 184
Query 179 ATGTAGTCGAAACCCTAAAAGA-GTCGTTGAGCCGTGTGCTAGTCCATTTTTACCCCATG 237
|||||||||||| ||||||| | |||||||||||||||||||||||||||||||| |||
Sbjct 185 ATGTAGTCGAAATCCTAAAA-ACCTCGTTGAGCCGTGTGCTAGTCCATTTTTACCCTATG 243
Query 238 GCTGGCCGTCTCAGATGGCTCCCTCGGGGGCGATTCGAGCTCAATTGTAACGCCGAGGGA 297
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 244 GCTGGCCGTCTCAGATGGCTCCCTCGGGGACGGTTCGAGCTCAATTGTAACGCCGAGGGA 303
Query 298 GTGGAATTCATCGAAGCGGAATCCGAAGGAAAGCTTTCGGATTTCAAAGATTTCTCTCCT 357
||||||||||| ||||||||||| || || |||||||||||||||||||| |||||||||
Sbjct 304 GTGGAATTCATTGAAGCGGAATCTGAGGGGAAGCTTTCGGATTTCAAAGACTTCTCTCCT 363
Query 358 ACGCCGGAATTCGAGAATCTTATGCCGCAAGTAAACTATAAAAACCCTATCGAAACGATT 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 364 ACGCCGGAATTCGAGAATCTTATGCCGCAAGTAAACTATAAAAACCCTATCGAAACGATT 423
Query 418 CCTCTATTTTTAGCTCAGCTTACCAAATTCAAATGCGGTGGATTAAGCCTTAGCGTCAAC 477
|||||||||||||||||| | ||||||||||||||||||||| |||||||||||||||||
Sbjct 424 CCTCTATTTTTAGCTCAGGTAACCAAATTCAAATGCGGTGGAATAAGCCTTAGCGTCAAC 483
Query 478 GTTTCCCACGCGATCGTCGATGGCCAAAGCGCGCTTCACTTAATATCGGAATGGGGAAGA 537
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 484 GTTTCCCACGCGATCGTAGATGGCCAAAGCGCGCTTCACTTAATATCGGAATGGGGAAGA 543
Query 538 CTAGCGCGCGGTGAACCTTTAGAAACCGTTCCATTTCTAGACAGGAAAATCCTCTGGGCT 597
|| |||||||||||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct 544 CTCGCGCGCGGTGAACCGTTAGAAACCGTTCCATTTCTAGACCGGAAAATCCTCTGGGCT 603
Query 598 GGTGAACCTCTCCCACCGTTTGAGTCGCCGCCAAAGTTCGATCACAAAGAGTTTGATCAG 657
|||||||| ||||||||||||| |||||| ||||||||||| ||||||||||||||||||
Sbjct 604 GGTGAACCGCTCCCACCGTTTGTGTCGCCCCCAAAGTTCGACCACAAAGAGTTTGATCAG 663
Query 658 CCACCGTTTTTGATCGGAGAAACGGACAATGTAGAAGAGAGAAAGAAGAAGACGATTGTT 717
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 664 CCACCGTTTTTGATCGGAGAAACGGACAATGTAGAAGAGAGAAAGAAGAAAACGATTGTG 723
Query 718 GTCATGCTAAAACTGAGCAAATCTCAGCTGGAGAAGCTAAGAAGTAAAGCGAACGCAAGC 777
|| |||||| |||||||| |||||||||| |||||||| |||||||||| |||| ||||
Sbjct 724 GTGATGCTACCACTGAGCACATCTCAGCTGCAGAAGCTACGAAGTAAAGCCAACGGAAGC 783
Query 778 AAATACGCTGACCCAGCGAAAGGGTTTACACGGTACGAGACCGTCACGGGACACGTGTGG 837
||| || ||||||| ||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct 784 AAACACTCTGACCCGGCGAAAGGGTTTACAAGGTACGAGACCGTCACCGGACACGTGTGG 843
Query 838 AGGTGCGCGTGTAAAGCACGTGGCCATTCTCCGGAGCAACCCACGGCTCTAGGAATCTGT 897
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 844 AGGTGCGCGTGTAAAGCACGTGGCCACTCTCCGGAGCAACCAACGGCTCTAGGAATCTGT 903
Query 898 ATAGATACTCGTAGTCGGATGCAGCCACCTCTGCCCCGTGGCTACTTCGGCAATGCTACT 957
||||||||||||||||||||| ||||||||||||| || |||||||||||||||||||||
Sbjct 904 ATAGATACTCGTAGTCGGATGGAGCCACCTCTGCCACGCGGCTACTTCGGCAATGCTACT 963
Query 958 CTTGACGTGGTCGCAGCAAGCACCTCAGGCGAACTGATATCGAATGAATTGGGTTTCGCG 1017
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 964 CTTGACGTGGTCGCAGCAAGCACCTCAGGTGAACTGATATCGAATGAATTGGGTTTCGCG 1023
Query 1018 GCGAGTTTAATCAGTAAAGCCATAAAGAATGTAACAAACGAATACGTGATGATTGGGATA 1077
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1024 GCGAGTTTAATCAGTAAAGCCATAAAGAATGTAACAAACGAATACGTGATGATTGGGATA 1083
Query 1078 GAGTATCTTAAGAACCAAAAAGATCTGAAGAAGTTTCAAGACCTACATGCCTTGGGAAGC 1137
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1084 GAGTATCTTAAGAACCAAAAAGATCTGAAGAAGTTTCAAGATCTACATGCCTTGGGAAGC 1143
Query 1138 GCGGAAGGTCCATTCTATGGAAACCCTAATCTTGGATTGGTTAGCTGGTTAACTTTGCCA 1197
|||||||||||||||| |||||||| ||||||||| |||| ||||||||||||||||||
Sbjct 1144 ACGGAAGGTCCATTCTACGGAAACCCAAATCTTGGAGTGGTGAGCTGGTTAACTTTGCCA 1203
Query 1198 ATGTATGGCCTTGATTTCGGATGGGGCAAGGAGTTCTACACGGGACCAGGCACGCATGA- 1256
||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1204 ATGTACGGCCTTGATTTCGGATGGGGCAAAGAGTTCTACACGGGACCAGGCACGCATGAC 1263
Query 1257 TTTCGACGGTGACTCGCTGATCTTGCCGGATCAAAACGAAGATGGCTCGGTGATTCTTGC 1316
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1264 TTT-GACGGCGACTCGCTGATCTTGCCGGATCAAAACGAAGATGGCTCGGTGATTCTCGC 1322
Query 1317 TACGTGTCTACAGGTGGCTCACATGGAGGCCTTCAAGAAACACTTCTATGACGATATCTA 1376
|||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 1323 GACGTGTCTACAGGTGGCTCACATGGAGGCCTTCAAGAAACACTTTTATGAAGATATCTA 1382
Query 1377 GGC-TTGTCTCTTTTT-ATATACATGACGTATACAAATATTTATGCATTTTCATTTGAAT 1434
||| || | | ||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1383 GGCCTTATATGTTTTTTATATACATGACGTATACAAATATTTATGCACTTTCATTTGAAT 1442
Query 1435 TCTACTTATATTGTTGTGATTATTGAATTGTAATAACAAATTCACACATAAACTATATAT 1494
|||||||||||||| ||||||||||||||||||||||| |||| ||||||||||||
Sbjct 1443 TCTACTTATATTGTAGTGATTATTGAATTGTAATAACAGATTC-----TAAACTATATAT 1497
Query 1495 ATTATTGTTTTTACTATAAT 1514
| |||||| |||||| |||
Sbjct 1498 -T-ATTGTTCTTACTACAAT 1515
> AT2G19060.1 | Symbols: | SGNH hydrolase-type esterase superfamily
protein | chr2:8257000-8260545 FORWARD LENGTH=1811
Length=1811
Score = 737 bits (399), Expect = 0.0
Identities = 469/501 (94%), Gaps = 11/501 (2%)
Strand=Plus/Minus
Query 1017 GGCGAGTTTAATCAGTAAAGCCATAAAGAATGTAACAAACGAATACGTGATGATTGGGAT 1076
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1811 GGCGAGTTTAATCAGTAAAGCCATAAAGAATGTAACAAACGAATACGTGATGATTGGGAT 1752
Query 1077 AGAGTATCTTAAGAACCAAAAAGATCTGAAGAAGTTTCAAGACCTACATGCCTTGGGAAG 1136
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1751 AGAGTATCTTAAGAACCAAAAAGATCTGAAGAAGTTTCAAGATCTACATGCCTTGGGAAG 1692
Query 1137 CGCGGAAGGTCCATTCTATGGAAACCCTAATCTTGGATTGGTTAGCTGGTTAACTTTGCC 1196
| |||||||||||||||| |||||||| ||||||||| |||| |||||||||||||||||
Sbjct 1691 CACGGAAGGTCCATTCTACGGAAACCCAAATCTTGGAGTGGTGAGCTGGTTAACTTTGCC 1632
Query 1197 AATGTATGGCCTTGATTTCGGATGGGGCAAGGAGTTCTACACGGGACCAGGCACGCATGA 1256
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1631 AATGTACGGCCTTGATTTCGGATGGGGCAAAGAGTTCTACACGGGACCAGGCACGCATGA 1572
Query 1257 -TTTCGACGGTGACTCGCTGATCTTGCCGGATCAAAACGAAGATGGCTCGGTGATTCTTG 1315
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1571 CTTT-GACGGCGACTCGCTGATCTTGCCGGATCAAAACGAAGATGGCTCGGTGATTCTCG 1513
Query 1316 CTACGTGTCTACAGGTGGCTCACATGGAGGCCTTCAAGAAACACTTCTATGACGATATCT 1375
| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 1512 CGACGTGTCTACAGGTGGCTCACATGGAGGCCTTCAAGAAACACTTTTATGAAGATATCT 1453
Query 1376 AGGC-TTGTCTCTTTTT-ATATACATGACGTATACAAATATTTATGCATTTTCATTTGAA 1433
|||| || | | ||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct 1452 AGGCCTTATATGTTTTTTATATACATGACGTATACAAATATTTATGCACTTTCATTTGAA 1393
Query 1434 TTCTACTTATATTGTTGTGATTATTGAATTGTAATAACAAATTCACACATAAACTATATA 1493
||||||||||||||| ||||||||||||||||||||||| |||| |||||||||||
Sbjct 1392 TTCTACTTATATTGTAGTGATTATTGAATTGTAATAACAGATTC-----TAAACTATATA 1338
Query 1494 TATTATTGTTTTTACTATAAT 1514
| | |||||| |||||| |||
Sbjct 1337 T-T-ATTGTTCTTACTACAAT 1319
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74698410960
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5