BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480832
Length=658
Score E
Sequences producing significant alignments: (Bits) Value
AT2G19000.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 942 0.0
> AT2G19000.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant
structures; EXPRESSED DURING: L mature pollen stage, M germinated
pollen stage, 4 anthesis, C globular stage, petal differentiation
and expansion stage; Has 71 Blast hits to 71 proteins
in 12 species: Archae - 0; Bacteria - 0; Metazoa - 2;
Fungi - 0; Plants - 69; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink). | chr2:8241104-8241784 FORWARD LENGTH=681
Length=681
Score = 942 bits (510), Expect = 0.0
Identities = 631/684 (92%), Gaps = 29/684 (4%)
Strand=Plus/Plus
Query 1 ATTCAATTTcacaacaaacaatct-c-cac-acacaacaacaacaacaacaacaacaaca 57
||||||| ||||||||| |||||| | ||| | |||| ||||||||||||||||||||||
Sbjct 1 ATTCAATCTCACAACAACCAATCTACACACAAAACAATAACAACAACAACAACAACAACA 60
Query 58 ac-aacaacaa-taacaacaacaaAATG--T-CAAAATCTATCTTTTTACTTTTTCTTCT 112
|| |||||||| ||||||||||||||| | ||||||| ||| |||||| |||||||||
Sbjct 61 ACAAACAACAACAAACAACAACAAAATGTTTACAAAATCAATCCTTTTACCTTTTCTTCT 120
Query 113 GATAATCGTCTTCGTCTCAGCATCTCAAGCAAGTCGTCAACTCTGGGATGGTGGAATCAG 172
| ||||| |||||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 121 GGTAATCATCTTCGTCTCAGCATCTCAAGCTAGTCGTCAACTCTGGGATAGTGGAATCAG 180
Query 173 CGAAATGTTTGGATCCAAATCCGGGTTTCA-C--GGATTTTCAGGGTTTTCGGGGT-C-C 227
||| |||||||| ||||||||||||||||| | |||||||| ||||||||||||| | |
Sbjct 181 CGAGATGTTTGGTTCCAAATCCGGGTTTCATCATGGATTTTCCGGGTTTTCGGGGTCCTC 240
Query 228 ------T-CTGGAGGTGCTGGAGGATCATTCGGAGATATGATGAATGCTGGAGGTGCACA 280
| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TGGAGGTGCTGGAGGTGCTGGAGGATCATTCGGAGATATGATGAATGCTGGAGGTGCACA 300
Query 281 TACATGCTCGGCGCAAGGAGCTTGTAAG-GGTAAGAAGCTGACATGTCCTGAGGAGTGCT 339
||||||||||||||||||||||||| || |||||||||||||||||||| ||||||||||
Sbjct 301 TACATGCTCGGCGCAAGGAGCTTGT-AGCGGTAAGAAGCTGACATGTCCCGAGGAGTGCT 359
Query 340 ACAAATCAACCAACGTTAACAAGGATGGTTATAAAAGCACCAGCCGCAGCGGAGGATGTT 399
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 360 ACAAATCAACCAACGTTAACAAGGATGGTTATAAAAGCACCAGCCGCAGTGGAGGATGTT 419
Query 400 CATTTGACTGTACGACCAAGTGTGCCGCGACTTGTTCAAATTAACATGTTAATTTGCACa 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 CATTTGACTGTACGACCAAGTGTGCCGCGACTTGTTCAAATTAACATGTTAATTTGCACA 479
Query 460 tatatattatatgttcttatattatgttgatatgttatgttataacactatatagtctat 519
|||||||||||||||| |||| ||||||| |||||||||||||| || ||||||||||||
Sbjct 480 TATATATTATATGTTCGTATAGTATGTTGTTATGTTATGTTATAGCATTATATAGTCTAT 539
Query 520 atatatg--aatatgat-aaaccggcaa-ctatatgGGAGAGTTTAG-GTCTCCCTTTGT 574
||||||| ||||| || |||||||||| |||||||||| |||| | ||||||||||||
Sbjct 540 ATATATGTCAATATAATAAAACCGGCAAGGTATATGGGAG-GTTT-GTGTCTCCCTTTGT 597
Query 575 AATTTTGTATGGATCTTGATTAGAAGCTTTCTATGAATCTATGTACATAATATGATTTTG 634
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 AATTTTGTATGGATCTTGATTAGAAGCTTTCTATGAATCTATGTACATAATATGATTTTG 657
Query 635 AATAAAAGAAAATTTAGTGTTTCT 658
||||||||||||||||||||||||
Sbjct 658 AATAAAAGAAAATTTAGTGTTTCT 681
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31798215051
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5