BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480833
Length=811
Score E
Sequences producing significant alignments: (Bits) Value
AT2G18990.1 | Symbols: TXND9 | thioredoxin domain-containing pr... 1203 0.0
AT3G25580.1 | Symbols: | Thioredoxin superfamily protein | chr... 883 0.0
> AT2G18990.1 | Symbols: TXND9 | thioredoxin domain-containing
protein 9 homolog | chr2:8238691-8240002 REVERSE LENGTH=866
Length=866
Score = 1203 bits (651), Expect = 0.0
Identities = 761/813 (94%), Gaps = 11/813 (1%)
Strand=Plus/Plus
Query 1 AAATTTGAATTCCTCAGAATTGCGGAGCAGAAAAAAGCAACCATGGCGAATCCTATTCAA 60
||||||||| ||||||||||||| |||| ||| || |||||||||||||||||||||||
Sbjct 32 AAATTTGAAATCCTCAGAATTGCAGAGC--AAAGAA-CAACCATGGCGAATCCTATTCAA 88
Query 61 GAGATTCTGGAGAAACAAGTTCTAACGGTAGCGAAAGCTATGGAAGATAAGCTAGACGAC 120
|||||||||||||| |||||||||||||| || |||||||||||||||||| ||||||||
Sbjct 89 GAGATTCTGGAGAAGCAAGTTCTAACGGTGGCTAAAGCTATGGAAGATAAGATAGACGAC 148
Query 121 GAGATCGCGTCTTTAGAAAAGCTTGACGAAGACGATTTAGAGGTTTTGAGAGAGAGAAGG 180
|||||||| |||||||||||||||||||| |||||| |||||||||||||||||||||||
Sbjct 149 GAGATCGCCTCTTTAGAAAAGCTTGACGAGGACGATCTAGAGGTTTTGAGAGAGAGAAGG 208
Query 181 TTAAAGCAGATGAAGAAAATGGCAGAGAAGAAGAAACGTTGGATTGGTCTTGGACATGGT 240
|||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 209 TTAAAGCAAATGAAGAAAATGGCAGAGAAGAAGAAACGTTGGATTAGTCTTGGACATGGT 268
Query 241 GAATACTCTGAGATCCATTCTGAGAAAGACTTCTTCTCCATCGTTAAAGCCAGCGAACGC 300
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 269 GAATACTCTGAGATCCATTCTGAGAAAGACTTCTTCTCCGTCGTTAAAGCCAGCGAACGC 328
Query 301 GTCGTCTGCCACTTCTTCCGCGAGAATTGGCCTTGTAAAGTGATGGATAAACATATGAGT 360
||||||||||| |||| ||||||||||||||| ||||||||||||||||| || ||||||
Sbjct 329 GTCGTCTGCCATTTCTACCGCGAGAATTGGCCATGTAAAGTGATGGATAAGCACATGAGT 388
Query 361 ATATTGGCAAAGCAACACATTGAGACACGTTTTGTGAAGATTCAAGCTGAGAAAAGTCCG 420
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 389 ATATTGGCAAAGCAACACATTGAGACACGTTTTGTGAAGATCCAAGCTGAGAAAAGTCCG 448
Query 421 TTCTTGGCTGAGAGACTCAAGATTGTTGTTCTTCCTACTCTTGCTCTCATTAAGAACACT 480
|||||||||||||| ||||||||||||||||| ||||||||||| || ||||||||||||
Sbjct 449 TTCTTGGCTGAGAGGCTCAAGATTGTTGTTCTACCTACTCTTGCACTTATTAAGAACACT 508
Query 481 AAAGTCGATGATTATGTGGTTGGGTTCAATGAGCTGGGAGGGAAAGATGATTTCAGTACA 540
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 509 AAAGTCGATGATTATGTGGTTGGGTTCAATGAGCTTGGAGGGAAAGATGATTTCAGCACT 568
Query 541 GAGGATTTGGAAGAGAGAATAGCCAGAGCGCAAGTGATCCATTACGAGGGAGAGTCATCG 600
||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||
Sbjct 569 GAGGATTTGGAAGAGAGAATAGCTAGAGCGCAAGTGATTCATTACGATGGAGAGTCATCG 628
Query 601 TCGCTTAAACCAAAGTCTACAACACAAGTCAGAAGGAACGTGAGGCAGAGTGCTCGTTCA 660
||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||
Sbjct 629 TCGCTTAAACCAAAGTCGACAACACAAGTTAGAAGGAATGTGAGGCAGAGTGCTCGTTCA 688
Query 661 GATTCCGACTCCGAATAAAATC-CAAGTTTTTTCAACAAAT-TTTCGTTGGTATGTTCAT 718
||||| ||||||||||| | || | |||||| || |||| ||| ||||||||||||||
Sbjct 689 GATTCAGACTCCGAATAGACTCTCGGGTTTTT-CAGCAAACGTTT-GTTGGTATGTTCAT 746
Query 719 GATCCTCACTCTATCTTCAGCCCTTTTTTG-TGTGAGTTTGTTGTATTGTGCGAATTCAG 777
|||| ||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 747 GATCTTCACTCTATCTTCAGCCCTTTTTTGGTGTGAGTTTGT---ATTGTGCGAATTCAG 803
Query 778 TTGTGATGTGTAATAGAAAGTAGGAGATGATCT 810
||||||||||||||| |||||||||||||||||
Sbjct 804 TTGTGATGTGTAATACAAAGTAGGAGATGATCT 836
> AT3G25580.1 | Symbols: | Thioredoxin superfamily protein | chr3:9292485-9294347
FORWARD LENGTH=904
Length=904
Score = 883 bits (478), Expect = 0.0
Identities = 592/647 (91%), Gaps = 8/647 (1%)
Strand=Plus/Plus
Query 39 AACCATGGCGAATCCTATTCAAGAGATTCTGGAGAAACAAGTTCTAACGGTAGCGAAAGC 98
||| ||||||||||| |||||||||||| | |||||||||||||||||||||||||||||
Sbjct 69 AACAATGGCGAATCCAATTCAAGAGATTATTGAGAAACAAGTTCTAACGGTAGCGAAAGC 128
Query 99 TATGGAAGATAAGCTAGACGACGAGATCGCGTCTTTAGAAAAGCTTGACGAAGACGATTT 158
|||||| |||||| ||||||||||||| |||||| | ||||||||||| ||||| |||||
Sbjct 129 TATGGAGGATAAGATAGACGACGAGATAGCGTCTCTGGAAAAGCTTGATGAAGATGATTT 188
Query 159 AGAGGTTTTGAGAGAGAGAAGGTTAAAGCAGATGAAGAAAATGGCAGAGAAGAAGAAACG 218
|| |||||||||||||| || || |||||||||||||||||||| ||||||||||||||
Sbjct 189 GGAAGTTTTGAGAGAGAGGAGATTGAAGCAGATGAAGAAAATGGCGGAGAAGAAGAAACG 248
Query 219 TTGGATTG-GTCTTGGACATGGTGAATACTCTGAGATCCATTCTGAGAAAGACTTCTTCT 277
|||| || || ||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 249 GTGGA-TGAGTATTGGACATGGTGAATACTCTGAGATTCATTCTGAGAAAGATTTCTTCT 307
Query 278 CCATCGTTAAAGCCAGCGAACGCGTCGTCTGCCACTTCTTCCGCGAGAATTGGCCTTGTA 337
|| | |||||| | || ||||||||||| || ||||||| ||| ||||||||||| ||||
Sbjct 308 CCGTTGTTAAATCTAGTGAACGCGTCGTTTGTCACTTCTACCGTGAGAATTGGCCCTGTA 367
Query 338 AAGTGATGGATAAACATATGAGTATATTGGCAAAGCAACACATTGAGACACGTTTTGTGA 397
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 368 AAGTGATGGATAAACACATGAGCATATTGGCAAAGCAACACATTGAGACACGTTTCGTGA 427
Query 398 AGATTCAAGCTGAGAAAAGTCCGTTCTTGGCTGAGAGACTCAAGATTGTTGTTCTTCCTA 457
|||| ||||||||||||||||| |||||||||||||| || ||||||||||||||||| |
Sbjct 428 AGATCCAAGCTGAGAAAAGTCCATTCTTGGCTGAGAGGCTTAAGATTGTTGTTCTTCCCA 487
Query 458 CTCTTGCTCTCATTAAGAACACTAAAGTCGATGATTATGTGGTTGGGTTCAATGAGCTGG 517
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 488 CTCTTGCCCTCATTAAGAACACTAAAGTCGATGATTATGTGGTTGGGTTCAATGAACTGG 547
Query 518 GAGGGAAAGATGATTTCAGTACAGAGGAT-TTGGAAGAGAGAATAGCCAGAGCGCAAGTG 576
|||||||||||||||| || ||||| ||| || |||||||||||||||||||||||||||
Sbjct 548 GAGGGAAAGATGATTTTAGCACAGAAGATCTT-GAAGAGAGAATAGCCAGAGCGCAAGTG 606
Query 577 ATCCATTACGAGGGAGAGTCATCGTCGCTTAAACCAAAGTCTACAACACAAGTCAGAAGG 636
||||||||||||||||| ||||| | ||||||| |||||||||||||||||||||||||
Sbjct 607 ATCCATTACGAGGGAGAATCATC-T--CTTAAACAAAAGTCTACAACACAAGTCAGAAGG 663
Query 637 AACGTGAGGCAGAGTGCTCGTTCAGATTCCGACTCCGAATAAAATCC 683
||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 664 AACGTGAGGCAGAGTGCTCGTTCAGATTCTGACTCCGAATAAA-TCC 709
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39484039542
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5