BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480841
Length=2609
Score E
Sequences producing significant alignments: (Bits) Value
AT2G18900.1 | Symbols: | Transducin/WD40 repeat-like superfami... 4080 0.0
> AT2G18900.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr2:8188257-8192489 REVERSE LENGTH=2729
Length=2729
Score = 4080 bits (2209), Expect = 0.0
Identities = 2487/2620 (95%), Gaps = 23/2620 (1%)
Strand=Plus/Plus
Query 1 TTTCTTCTTCTCTTCCCAATTTCTCCG-C-CTCTCTATCGCCGGAAATCAAACAAAACCA 58
||||||||||||||||||||||| ||| | |||||||||||||||||| | |
Sbjct 28 TTTCTTCTTCTCTTCCCAATTTCACCGCCTCTCTCTATCGCCGGAAAT-------TA--A 78
Query 59 CCATGATTCGCGGCGGGAGAAGCTACGTAACTTCACCTCCATCATTCTCCAACGACGCTA 118
|||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 79 CCATGAAACGCGGCGGAAGAAGCTACGTAACTTCACCTCCATCATTCTCCAACGACGCTA 138
Query 119 AAAGGCTTCTCGTCTGCACAGGAAACACTGTCTCTGTTTTCAGCGCCGCCACTGGCTTAC 178
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 139 AAAAGCTTCTCGTCTGCACAGGAAACACTGTCTCTGTTTTCAGCGCCGCCACTGGCTTAC 198
Query 179 AGATTACTTCGCTTGAAGGTCATACAGCTCCAGTAACAACTCTAATTGTTGTTCCTGCAT 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 199 AGATTACTTCGCTTGAAGGTCATACAGCTCCAGTAACAACTCTAATTGTTGTTCCTGCAT 258
Query 239 CGAGTCCTGCTCAAAAAATCCTTTGTTATTGTTGGACTGCGTCTCTTGATGGTACAATTC 298
| |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 259 CAAGTCCTGCTCAAAAAATCCTTTGTTATTGTTGGACTGCTTCTCTTGATGGTACTATTC 318
Query 299 GTCATTGGGATTTCTCTGGACCTGAGCTTTTGAAAACCATTGATGCTCAGCTGCCGATTT 358
|||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||
Sbjct 319 GTCATTGGGATTTCTCTGGACCTGAGCTATTGAAAACTATTGATGCTCAGCTTCCGATTT 378
Query 359 ACTCTATGGTTATACCATCTCTTTTGAGTGAACCTCAACAAATTGATAAACGTCGTGAAT 418
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 379 ACTCTATGGTTATACCATCTCTTTTGAGCGAACCTCAACAAATTGATAAACGTCGTGAGT 438
Query 419 TATCTGGTAAGCTGGTTGCTTTTGTTTCGGTTGAGGATATAAGTGTGGTTAACGAAGGGT 478
| ||||||||| ||||||||| |||||| |||||||||||||||||||||||| ||||||
Sbjct 439 TGTCTGGTAAGTTGGTTGCTTATGTTTCCGTTGAGGATATAAGTGTGGTTAACCAAGGGT 498
Query 479 CTAAAGAGTTGCGTGGACATATCCGGAGATTTAACCTTGCTAAACCTCGTGTTCCTCGTG 538
||||||||||||||||||||||||| ||||||||||| ||||| | ||| |||||||||
Sbjct 499 CTAAAGAGTTGCGTGGACATATCCGAAGATTTAACCTCGCTAAGTCGCGTATTCCTCGTG 558
Query 539 GAGACACTTTGAAAGAGACGGCAGAACCAGAATCTATTGTTATCAGTCCCTCGGGAGAGT 598
|||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 559 GAGATACTTTAAAAGAGACGGCAGAACCAGAATCTATTGTTATTAGTCCCTCGGGAGAAT 618
Query 599 TTTTCGGAATCCGTCACAAGTGTAAAATTCATATATGGGATATTCCTTCTGGAGGATCAA 658
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 619 TTTTCGGAATCCGTCACAAGTGTAAAATTCATATATGGGATGTTCCTTCTGGAGGATCAA 678
Query 659 GGCATGCTGTTTCAAGGAAGATGACACTACATCACACAAAGGTTATCAATGCTTTTGCTT 718
||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 679 GGCATGCGGTTTCAAGGAAGATGACATTACATCACACAAAGGTTATCAATGCTTTTGCTT 738
Query 719 TTCATCCCACGGAGAGAGTTATAGCTGCTGGAGATGTAACGGGAAGAGTATTGATTTGGA 778
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 739 TTCATCCCACGGAGAGAGTTATAGCTGCTGGAGATGTAACTGGAAGAGTGTTGATTTGGA 798
Query 779 GAGGATTCGGTAATAGAAAACTTGCCTTGGGTAATCAAAAGAAAAAAGTGAGAGCAACGG 838
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 799 GAGGATTTGGTAATAGAAAACTTGCCTTGGGTAATCAAAAGAAAAAAGTGAGAGCCATGG 858
Query 839 TTGATTTGGACAACGCTGGAGTGAGAGGTGAAGATGATACTGAATCTTGCACTACATGGC 898
||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 859 TTGATTTGGACAATGCTGGAGTGAGAGGTGAAGATGATGCTGAATCTTGCACTACATGGC 918
Query 899 ACTGGCACTCTGCTGAAGTAAACGTCCTTAATTTCTCTTCCGATGGAGCATATTTGTATT 958
||||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 919 ACTGGCATTCTGCTGAAGTTAATGTCCTTAATTTCTCTTCCGATGGAGCATATTTGTATT 978
Query 959 CAGGGGGAAGGGAAGGGGTACTTGTCGTTTGGCAGCTAGACACAGGGAAGAAGAAATTCT 1018
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 979 CAGGGGGAAGGGAAGGGGTACTTGTCGTTTGGCAGCTAGACACAGGGAAAAAGAAATTCT 1038
Query 1019 TACCAAGAATAGGATCTCCCTTGCTGTATTTCATGTGGTCTCCAGATCCAACTCTTTCAT 1078
||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1039 TACCAAGGATAGGATCCCCCTTGCTGTATTTCATGTGGTCTCCAGATCCAACTCTTTCTT 1098
Query 1079 CTGTGGTTTGTGCAGATAATCAGATCCATTTGCTTAAAATGCCTTCCATGGAGATCTTAA 1138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1099 CTGTGGTTTGTGCAGATAATCAGATCCATTTGCTTAAAATGCCTTCCATGGAGATCTTAA 1158
Query 1139 GGACCATTTCTGGAATCAAGGCTCCCCCATCATTGCCTAGGATGTATGAAGGCCTGGCTA 1198
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 1159 GGACCATTTCTGGAATCAAGCCTCCCCCATCATTGCCTAGGATGTATGAAGGCTTGGCTA 1218
Query 1199 GTACTGTTGCCTTTGATCGATCTTCTGGCATAGCTGCTTTGTGCACAGAGAATTATTGTG 1258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1219 GTACTGTTGCCTTTGATCGATCTTCTGGCATAGCTGCTTTGTGCACAGAGAATTATTGTG 1278
Query 1259 TACAGCTATACAATCTTCTTAATGACCGGGGAATTTCAGAGATTCAAGTTTGTGAGAGAA 1318
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1279 TACAGCTATATAATCTTCTCAATGACCGGGGAATTTCAGAGATTCAAGTTTGTGAGAGAA 1338
Query 1319 ACCATCAACCAGGCGATGAAATCACAGTTGTGGTGACAGCGGTTGCTCTCTCCCTGGATG 1378
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1339 ACCATCAACCAGGAGATGAGATCACAGTTGTGGTGACAGCGGTTGCTCTCTCCCTGGATG 1398
Query 1379 GCTCAGTGATGAGTACAACCGAGGTGAAACTTCCGGAAGATGGCATAGGAGGCTTAGTGT 1438
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1399 GCTCAGTGATGAGTACAACCGAGGTGAAACTTCCGGAAGATGGAATAGGAGGCTTAGTGT 1458
Query 1439 CCCTCAAGTTTTGGGCGTGTGAACCAGACAGCAAAACTTTCACCTTATCCACAATCGTAT 1498
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1459 CCCTCAAGTTTTGGGCGTCTGAACCAGACAGCAAAACTTTCACCTTATCCACAATCGTAT 1518
Query 1499 ATGAACCTCACAGGGATGCCGGTGTGTCAGCCATTGCGTTCCACCCTACCCGCTCCATGG 1558
|||||||||| |||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct 1519 ATGAACCTCATAGGGATGCCGGTGTCTCAGCCATTGTGTTCCACCCTACCCGCTCCATGG 1578
Query 1559 CAGTTAGTACATCATTCGGTGGGGACTTCAAGATTTGGGTTTGCAACAGTGACAAAAACC 1618
|||| ||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||
Sbjct 1579 CAGTGAGTACATCATTCGGTGGTGACTTCAAGATTTGGGTATGCAACAGTGACAAGAACC 1638
Query 1619 AGACGGATAAGGACTCTAGCTGGATATGTCACGCTGTTGGCTCTTATAAGAAGAAGCCAA 1678
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1639 AGACGGATAAAGACTCTAGCTGGATATGTCACGCTGTTGGCTCTTATAAGAAGAAACCAA 1698
Query 1679 TGACTGCTGCTGCTTTCTCTGGGGATGGCACTGTTCTGGCTGTTGCAGCTGAGACTGTTA 1738
||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |||||
Sbjct 1699 TGACTGCTGCTGCTTTCTCTGGGGATGGCACTGTTATGGCTGTTGCGGCTGAGAATGTTA 1758
Query 1739 TTACGCTTTGGAATCCAGACAAGAACATTCTCTTGTCTGTTCTAGGAGCGACACTCACGC 1798
|||| || ||||||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct 1759 TTACACTGTGGAATCCAGATAAGAACATTCTCTTGTCTGTTCTAGGATCGACACTCACGC 1818
Query 1799 CTATCACAAAGCTCTGTTTCGCGGGAAAGTCTGAGTTTCTTGTTGCTGCATCCCATTTTC 1858
||||||| |||||||||||||| |||||||||||||| |||||||||||||||||| |||
Sbjct 1819 CTATCACGAAGCTCTGTTTCGCTGGAAAGTCTGAGTTCCTTGTTGCTGCATCCCATATTC 1878
Query 1859 CAAGACCTGAACTATCTGTTTGGAATACATCAAAGTTATCTATATCATGGTCATATGGAT 1918
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct 1879 CAAGACCTGAACTATCTGTTTGGAATACATCAAAGTTATCTTTATCATGGTCATATGGGT 1938
Query 1919 TACG-AGTAGAAGCTGTCACCTCTGCAGTGGATTCATCAGCATTTGCAGTCTTGGCTGTG 1977
|||| | |||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1939 TACGCA-TAGAAGCTGTCACCTCTGCAGTGGATTCGTCAGCATTTGCAGTCTTGGCTGTG 1997
Query 1978 ATCCCAAAAAGTTTTAAAACAGATAAATCTAAGGAGAACATCTTCCGTGGTAGAGATGGT 2037
|||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1998 ATCCCAAAAACTTTTAAAACAGATGAATCTAAGGAGAACATCTTCCGTGGTAGAGATGGT 2057
Query 2038 GCCATTCTTTTGTTTAACGGATCAGATCCTAAGCCAGTATCTATATGGACTGTGATTAAG 2097
||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||
Sbjct 2058 GCCATTCTTTTGTTTAACGGATCAGATCCCAAGCCGGTATCTATATGGACTGTGATGAAG 2117
Query 2098 GCTAAGGGAGGATCAATCTCATTTTTAG--G-AGACAAGTCGCAGCTTCGCCTAGCGTAT 2154
|||| ||||||||||||||||||||||| | ||| ||||| ||||||||||| || |||
Sbjct 2118 GCTAGGGGAGGATCAATCTCATTTTTAGAAGGAGATAAGTCTCAGCTTCGCCTTGCATAT 2177
Query 2155 GTAAATGGAAGCCGTGAGTATGTTGTTTTTGATCCCAATAGCGATGAGTCACACGAGCGT 2214
||||||||||||| ||| |||||||| |||||||||||||| ||||||||||| ||||||
Sbjct 2178 GTAAATGGAAGCCATGAATATGTTGTCTTTGATCCCAATAGTGATGAGTCACATGAGCGT 2237
Query 2215 AGCGCTGTTGACTACGACGGTCTTGCTGGTCTGGAAGAGACAGGAGACGCCGGGTACACA 2274
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2238 AGCGCTGTTGACTACGATGGTCTTGCTGGTCTGGAAGAGACAGGAGACGCCGGGTACACA 2297
Query 2275 TCCTTGTATGGGCAGTTACCTGATTATGACAAGAAGAGAATGGAGGATGTTGACTCGTTA 2334
||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2298 TCCTTATACGGGCAGTTACCTGATTATGACAAGAAGAGAATGGAGGATGTTGAGTCGTTG 2357
Query 2335 GCAACACCATTTATATCATCAGAGAGGCCATGGGAAACGATATTCAGCGGCTCTACACTA 2394
| |||||| ||| |||||||||| || || |||||||| |||||||||||||| ||||||
Sbjct 2358 GGAACACCGTTTGTATCATCAGAAAGACCGTGGGAAACAATATTCAGCGGCTCCACACTA 2417
Query 2395 AATTTCCCGCCACTTCAGAAATTATGCGCTGAGTTCTTTGAGTCCCTAATGGAGAAAAGA 2454
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2418 AATTTCCCGCCACTTCAGAAATTATGTGCTGAGTTCTTTGAGTCCCTAATGGAGAAAAGA 2477
Query 2455 ACGGCCGTTGTGGAATGAGACACCTTACACAAAAAGGTTTTTGGAAGGTTT-T-ATACAG 2512
||||||||||||||||||||| | |||||||||||| |||||| ||||||| | ||||||
Sbjct 2478 ACGGCCGTTGTGGAATGAGAC-C-TTACACAAAAAGTTTTTTGTAAGGTTTATTATACAG 2535
Query 2513 AAGG-GA--TCATTTTTGCAGCCATCTTTGGTGAGCAAAGTTGTTGAGTTTGTTCAGGAA 2569
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2536 AAGAAGAGCTCATTTTTGCAGCCATCTTTGGTGAGCAAAGTTGTTGAGTTTGTTCAGGAA 2595
Query 2570 ATTTTGTAGCTTTTTGTTGTGAGATTCGGTCCAGTTTATT 2609
||||||||||| ||||||||||||||||||||||||||||
Sbjct 2596 ATTTTGTAGCTCTTTGTTGTGAGATTCGGTCCAGTTTATT 2635
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 129531046826
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5