BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480844
Length=1457
Score E
Sequences producing significant alignments: (Bits) Value
AT2G18876.1 | Symbols: | Afadin/alpha-actinin-binding protein ... 2169 0.0
AT2G18880.1 | Symbols: VEL2 | vernalization5/VIN3-like | chr2:8... 176 5e-43
> AT2G18876.1 | Symbols: | Afadin/alpha-actinin-binding protein
| chr2:8169572-8172523 FORWARD LENGTH=1496
Length=1496
Score = 2169 bits (1174), Expect = 0.0
Identities = 1373/1465 (94%), Gaps = 29/1465 (2%)
Strand=Plus/Plus
Query 1 TTTTGGATTTTCGTGAAAAAGCTGAATTTGTCTCTTTCTCTATTTCTCTCCGGCGTCGAT 60
||||||||||| ||||||||| | ||||||||||||||||||||| ||||||||||| ||
Sbjct 25 TTTTGGATTTTGGTGAAAAAGTTTAATTTGTCTCTTTCTCTATTTATCTCCGGCGTCAAT 84
Query 61 TTCACGGCGGCTACGCGACGGTCATCGATGTCATTGACTGTACCGGAATTCGATTTCAGA 120
|||||||||||||| ||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct 85 TTCACGGCGGCTACACGACGGTTATCGATGTCATTGACTGTACCGGAGTTCGATTTCAGA 144
Query 121 GT-ACGTCTC--TCTCATTTCTTAACACCGCTTCA-CGAATTCTCTCTAAGGGAGCATAA 176
| ||| | | | | |||| | ||| | ||| || | || |||||| |||
Sbjct 145 TTGACGCCACAGTTTGGTTTC-T--CACAG--TCACCG-A-----TC--GGGGAGCGTAA 191
Query 177 TTTCGCAGATGTTGATAATCTGGAGAACTGTATAAAGTACTTGAATCAGAGCTTAGTCAC 236
|||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 192 TTTCGCGGATGTTGATAATCTGGAGAACTGTATTAAGTATTTGAATCAGAGCTTAGTCAC 251
Query 237 CTATGGATTCTCTGCTTCGCTCGACCTCTTCGCTACCGATCCTGTTTCGATTGCTAGAAC 296
|| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 252 CTCTGGATTCTCTGCTTCGCTTGACCTCTTCGCTACCGATCCTGTTTCGATTGCTAGAAC 311
Query 297 TTGCAATTGCGTATACGCTTTGATTCAACAGAGGCAACGAGATGTGGAATTCAGAGAATC 356
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 312 TTGCAATTGCGTATACGCTTTGATTCAACAGAGGCAACGAGATGTGGAATTTAGAGAATC 371
Query 357 TGCTAATGATCAGAGACAACGACTTTTATCCGATATGGCGAGACTCGAAGCAAAAGTTGA 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 372 TGCTAATGATCAGAGACAACGACTTTTATCCGATATGGCGAGACTCGAAGCAAAAGTTGA 431
Query 417 AAGGCTTGAGACTCAATTGCAAGCTAAGGAAAGGGAACTTGGTTCGGTGACAAGAACGGA 476
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 432 AAGGCTTGAGACTCAATTGCAAGCTAAAGAAAGGGAACTTGGTTCGGTGACAAGAACGGA 491
Query 477 AGCAAAAAATACAGCGGCTTTAAAGACGCAGAATGAGAAGCTACAGAAAGAGAGAGATGA 536
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 492 AGCAAAAAATACAGCGGCTTTAAAGACGCAGAATGAGAAGCTTCAAAAAGAGAGAGATGA 551
Query 537 GTTTCAACGAATGGTGATTGCCAACCAGCAAGTCAAGACCCAACAATTACATGAAACAAA 596
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 552 GTTTCAACGAATGGTGATTGCTAACCAGCAAGTCAAGACCCAACAATTACATGAAACAAA 611
Query 597 GAAA-AAAGAAAAGGAGTACATAAAGTTACAGGAGAGGTTAAACCAAGTGTTGATGGAGA 655
||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 612 -AAAGAAAGAAAAAGAGTACATAAAGTTACAGGAGAGGTTAAACCAAGTGTTGATGGAGA 670
Query 656 AAAAGAAGGAAACGAGATCAGGCATGGAGATTATGAATCTACTCCAGAAAGAAGGGAGAC 715
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 671 AAAAGAAGGAAACGAGATCAGGCATGGAGATTATGAATCTACTCCAGAAAGAAGGGAGAC 730
Query 716 AGCGTGGAACATGGAGTGGGAAGAAAACTGACTCTGATTTCTACaaaaaaaTTGTGGATG 775
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 731 AGCGTGGAACATGGAGTGGGAAGAAAACTGACTCTGATTTCTACAAAAAAATTGTGGATG 790
Query 776 CATATGAGGCAAAAAATCAAGAGCTGATGGCAGAGAACACTGATCTGAGAGCGTTACTGC 835
|||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 791 CATATGAGGCGAAAAATCAAGAACTGATGGCAGAGAACACTGATCTGAGAGCGTTACTAC 850
Query 836 GATCCACACAGGGAGACATGCGTTCTTTCTTGAATGCTTCCGGTGGATTACCCAATCAAT 895
|||| || ||||| |||||||||||||||||||||||||| ||||||||| |||| ||||
Sbjct 851 GATCAACGCAGGGTGACATGCGTTCTTTCTTGAATGCTTCTGGTGGATTAACCAACCAAT 910
Query 896 CTTTGGTAGCTAATGGAAGACACGACGCAGACCCTTCTCAGTCTCCTTTGGGCGGGAAGA 955
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 911 CTTTGGTAGCTAATGGAAGACACGGTGCAGACCCTTCTCAGTCTCCTTTGGGCGGGAAGA 970
Query 956 CGGATGTTTTCGACCTACCTTTTCGTATGGCTCGAGGTCAAATAGAAGATAGTTTACGCT 1015
|||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 971 CGGACGTTTTTGACCTACCTTTTCGTATGGCACGAGGTCAAATAGAAGATAGTTTACGCT 1030
Query 1016 CTAAGATGGTTTCCATCAAGGAACGTATGGGTCAGTTAGTAGATGCACAAAAAGAAGTAT 1075
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1031 CTAAGATGGTTTCCATCAAGGAACGTATGGGTCAGTTAGTAGATGCACAAAAAGAAGTAT 1090
Query 1076 CCATTACTTCAGAAGCGTCAGAGAGGGAACTTGAACTTGAAGCACAACTCGTCGAGGCAC 1135
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1091 CCATTACTTCAGAAGCGTCAGAGAGGGAACTTGAACTTGAAGCACAACTCGTCGAGGCAC 1150
Query 1136 GCAGCATAATTCAAGAACAGGAATCTATAATGTCCAAACATTTACCTAAGACAGATAGGA 1195
||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1151 GCAGCATTATTCAAGAACAGGAATCTATAATGTCCAAACATTTACCTAAGACAGATCGGA 1210
Query 1196 GAAGGAACTCAGCTCCCCCACATTCT---GTCAACGGACTGCGTGGCTGACTAATTAGAT 1252
|||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct 1211 GAAGGAACTCAGCTCCTCCACATTCTTCTGTCAACGGACTGCGTGGCTGACTAATTAGAT 1270
Query 1253 TGTGAATTTCAGGTTCCAAAGATCAAATCACTTCCTGTAATTTTGCTCTTGTTTAAACAA 1312
||||||| |||||||| ||| |||||||| ||||||||||||| | ||||| | ||||||
Sbjct 1271 TGTGAATCTCAGGTTCAAAATATCAAATCTCTTCCTGTAATTT-GATCTTGCT-AAACAA 1328
Query 1313 AGAAATATTTTATGAATTTATaaaaaaaaaTTAAATGAATGTGGATTCGTATTTGGAACG 1372
|||||| ||||||||| ||||||||||| ||||||||||||||||||||||||| ||||
Sbjct 1329 AGAAATGTTTTATGAACTTATAAAAAAAT-TTAAATGAATGTGGATTCGTATTTGTAACG 1387
Query 1373 TTGTACAGAACACTTGCAGACAACAAGTTTCAGGCTGTAGATTTTAATTATAGATGAATG 1432
|||||||||||||||||||||| |||| | || |||||||| | | ||||||||| | |
Sbjct 1388 TTGTACAGAACACTTGCAGACAGCAAGCTGCAAGCTGTAGAGT--A-TTATAGATGGA-G 1443
Query 1433 AAATATGTTTTATTTCATAATATAG 1457
| ||||||||||| |||||||||||
Sbjct 1444 AGATATGTTTTATATCATAATATAG 1468
> AT2G18880.1 | Symbols: VEL2 | vernalization5/VIN3-like | chr2:8172189-8178995
FORWARD LENGTH=2108
Length=2108
Score = 176 bits (95), Expect = 5e-43
Identities = 109/115 (95%), Gaps = 3/115 (3%)
Strand=Plus/Plus
Query 1153 CAGGAATCTATAATGTCCAAACATTTACCTAAGACAGATAGGAGAAGGAACTCAGCTCCC 1212
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 7 CAGGAATCTATAATGTCCAAACATTTACCTAAGACAGATCGGAGAAGGAACTCAGCTCCT 66
Query 1213 CCACA---TTCTGTCAACGGACTGCGTGGCTGACTAATTAGATTGTGAATTTCAG 1264
||||| |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 67 CCACATTCTTCTGTCAACGGACTGCGTGGCTGACTAATTAGATTGTGAATCTCAG 121
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71836979895
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5