BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480849
Length=890
Score E
Sequences producing significant alignments: (Bits) Value
AT2G18840.1 | Symbols: | Integral membrane Yip1 family protein... 1426 0.0
AT4G30260.1 | Symbols: | Integral membrane Yip1 family protein... 752 0.0
> AT2G18840.1 | Symbols: | Integral membrane Yip1 family protein
| chr2:8158198-8160091 FORWARD LENGTH=1179
Length=1179
Score = 1426 bits (772), Expect = 0.0
Identities = 865/907 (95%), Gaps = 18/907 (2%)
Strand=Plus/Plus
Query 1 TTTTGCCCTAAATCACTTTCCCGGGAAAATCAAACTCT-GGG-AA-A---GAAA-AATGT 53
||| |||||||||||||||||||||||||||||||||| ||| || | |||| |||||
Sbjct 35 TTTGGCCCTAAATCACTTTCCCGGGAAAATCAAACTCTGGGGAAAGAGTTGAAACAATGT 94
Query 54 CACAAGGCGATACAGTACCGCTTCATTCATCGTCTCAATCAGACATTGACGAGATCGAGA 113
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 95 CACAAGGCGATACAGTACCGCTTCATCCATCGTCTCAATCAGACATTGACGAGATCGAGA 154
Query 114 ATCTGATTAACGAAAGCGTCCAATCAGGTCCCGGAACCGTTCTCGCCGCTCGTCCACCGA 173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 155 ATCTGATTAACGAAAGCGTCCAATCAGGTCCCGGAACCGTTCTCGCCGCTCGTCCACCGA 214
Query 174 GCCCAACCAGACCGTCGATTCCAG--------T-TTCTTCTTCTTCTCCGTTTATGCAAT 224
||||||||||||| |||||||||| | ||||||||||||||||||||||||||
Sbjct 215 GCCCAACCAGACCTTCGATTCCAGTATCTTCTTCTTCTTCTTCTTCTCCGTTTATGCAAT 274
Query 225 CGAATCTTCCTCCGCTTCATCCGTCGTCATCAGCTCAGAAAGTGACACCTGTCCCCGTTC 284
|||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 275 CGAATCTTCCACCGCTTCATCCGTCGTCATCAGCTCAGAAAGTGACACATGTCCCCGTTC 334
Query 285 CTCCGCCTCTTCCGGCGGTAAGTAATTCTAGCAATTTCCAAGGAGCGAGTGCGTTTGGAT 344
||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||||
Sbjct 335 CTCCGCCTCTTCCGGCGGTAAGTAACTCCAGCAATTTCCAAGGAGCGAGTGCTTTTGGAT 394
Query 345 CTCCGCCTAATACGTTGACGGAGCCTGTGTGGGATACTGTGAAACGAGATCTGTCTCGGA 404
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 395 CTCCGCCTAATACGTTGACGGAGCCTGTGTGGGATACTGTGAAGCGAGATCTGTCTCGGA 454
Query 405 TTGTGAGTAATTTGAAGCTTGTGGTGTTTCCTAATCCGTATAGAGAAGATCCTGGGAAGG 464
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 455 TCGTGAGTAATTTGAAGCTTGTGGTGTTTCCTAATCCGTATAGGGAAGATCCTGGGAAGG 514
Query 465 CTCTTAGAGATTGGGATCTTTGGGGTCCGTTTTTCTTCATTGTGTTCTTGGGAT-TGACT 523
|||||||||||||||||||||||||||||||||||||||||||||||||||| | | |||
Sbjct 515 CTCTTAGAGATTGGGATCTTTGGGGTCCGTTTTTCTTCATTGTGTTCTTGGG-TCTTACT 573
Query 524 CTTTCATGGTCAGCTTCCGTTAAGAAGTCCGAGGTATTTGCAGTGGCATTTGCACTATTA 583
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 574 CTTTCATGGTCAGCTTCCGTCAAGAAGTCCGAGGTATTTGCAGTGGCATTTGCACTATTA 633
Query 584 GCAGCCGGGGCGGTGATCCTTACACTAAACGTGCTTCTCCTGGGTGGACATATAATCTTC 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 634 GCAGCCGGGGCGGTGATCCTTACACTAAACGTGCTTCTCCTGGGTGGACATATAATCTTC 693
Query 644 TTCCAAAGCTTGAGCCTTCTAGGTTACTGTTTATTTCCACTAGACGTTGGAGCTGTGATC 703
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 694 TTCCAAAGCTTGAGCCTTCTAGGTTACTGTTTATTTCCGCTAGACGTTGGAGCCGTGATC 753
Query 704 TGCATGTTGAAAGACAATGTGATACTGAAGATTGTGGTTGTGTCGGTAACGCTTGCATGG 763
|||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||| |||
Sbjct 754 TGCATGTTGAAAGACAATGTGATACTGAAGATGGTGGTTGTGTCTGTAACCCTTGCCTGG 813
Query 764 AGCTCATGGGCTGCTTACCCTTTCATGAGCTCAGCGGTTAACCCAAGAAGAAAAGCACTC 823
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 814 AGCTCATGGGCTGCTTACCCTTTTATGAGCTCAGCGGTTAACCCAAGAAGAAAAGCACTC 873
Query 824 GCTCTATACCCCGTCTTCCTCATGTATGTATCAGTCGGTTTCCTCATCATCGCCATCAAT 883
||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||
Sbjct 874 GCTCTATACCCCGTCTTCCTCATGTATGTGTCAGTCGGTTTTCTCATCATAGCCATCAAT 933
Query 884 TAAATCC 890
| |||||
Sbjct 934 TGAATCC 940
> AT4G30260.1 | Symbols: | Integral membrane Yip1 family protein
| chr4:14816622-14818854 REVERSE LENGTH=1243
Length=1243
Score = 752 bits (407), Expect = 0.0
Identities = 721/867 (83%), Gaps = 43/867 (5%)
Strand=Plus/Plus
Query 43 AAG-AAAAATGT--CACAAGGCGATACAG-TACCGCTTCATTC-ATCGTCTCAATCAGAC 97
||| |||||||| ||||| |||||| | | |||||| | || ||| ||||||||||||
Sbjct 125 AAGAAAAAATGTCGCACAA--CGATAC-GATTCCGCTTTA-TCAATCATCTCAATCAGAC 180
Query 98 ATTGACGAGATCGAGAATCTGATTAACGAAAGCGTCCAATCAGGTCCCGGAACCGTTC-T 156
||||||||||| |||||| |||| ||||| || | |||||||||||||||||||| | |
Sbjct 181 ATTGACGAGATTGAGAATATGATGAACGACAGTTTTCAATCAGGTCCCGGAACCGTGCTT 240
Query 157 CGCCGCTCGTCCACCGAG-CCCAACCAGACCGTCGATTCCAGTTTCTTCTTCTTCTCCGT 215
| | ||||| |||||||| || | || | ||||||||||| ||||| || | || ||||
Sbjct 241 C-CTGCTCGACCACCGAGTCCGATCC-GTCCGTCGATTCCCGTTTCATC--C-TCACCGT 295
Query 216 TTATGCAATCGAATCTTCCTCCGCTT-CATCCGTCG------TCAT-CAGCTCAGAAAGT 267
| | ||||| ||||| || |||||| || |||||| || | || ||||||| ||
Sbjct 296 TCGTTCAATCCAATCTCCCACCGCTTCCA-CCGTCGTCTTCCTCCTCCA-CTCAGAAGGT 353
Query 268 GACACCTGTCCCCGTTCCTCCGCCTCTTCCG---GC-GGTAA-GTAATTCTAGCAATTTC 322
|| ||||| || | |||||| || |||||| || ||||| | || || |||
Sbjct 354 GATGCCTGTTCCAGCTCCTCCACCACTTCCGTCAGCAGGTAACG-AA-GGTAACAA-GAG 410
Query 323 CA-AGGAGCG-AGTGCG-TTTGGATCTCCGCCTAATACGTTGACGGAGCCTGTGTGGGAT 379
| |||| | || | | || ||||||||||| ||||| |||||||||||||| ||||||
Sbjct 411 TATTGGAG-GTAGCG-GATTCGGATCTCCGCCAAATACATTGACGGAGCCTGTTTGGGAT 468
Query 380 ACTGTGAAACGAGATCTGTCTCGGATTGTGAGTAATTTGAAGCTTGTGGTGTTTCCTAAT 439
|||||||| || |||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 469 ACTGTGAAGCGTGATCTGTCACGGATCGTGAGTAATTTGAAGCTTGTGGTGTTTCCTAAT 528
Query 440 CCGTATAGAGAAGATCCTGGGAAGGCTCTTAGAGATTGGGATCTTTGGGGTCCGTTTTTC 499
|||||||| |||||||||||||| || ||||| ||||||||||| ||||| || ||||||
Sbjct 529 CCGTATAGGGAAGATCCTGGGAAAGCACTTAGGGATTGGGATCTATGGGGACCTTTTTTC 588
Query 500 TTCATTGTGTTCTTGGGA-TTGACTCTTTCATGGTCAGCTTCCGTTAAGAAGTCCGAGGT 558
||||||||||||||||| || |||||||| ||||| ||||||||||||||||| || ||
Sbjct 589 TTCATTGTGTTCTTGGGGCTT-ACTCTTTCGTGGTCTGCTTCCGTTAAGAAGTCTGAAGT 647
Query 559 ATTTGCAGTGGCATTTGCACTA-TTAGCAGCCGGGGCGGTGATCCTTACACTAAACGTGC 617
|||||| ||||||||||||||| || ||||| ||||| |||||||| |||||||| ||||
Sbjct 648 ATTTGCCGTGGCATTTGCACTACTT-GCAGCTGGGGCAGTGATCCTCACACTAAATGTGC 706
Query 618 TTCTCCTGGGTGGACATATAATCTTCTTCCAAAGCTTGAGCCTTCTAGGTTACTGTTTAT 677
| || ||||| |||||||||||||| ||||||||| | ||||||||||| |||||| |||
Sbjct 707 TGCTTCTGGGAGGACATATAATCTTTTTCCAAAGCCTAAGCCTTCTAGGCTACTGTCTAT 766
Query 678 TTCCACTAGACGTTGGAGCTGTGATCTGCATGTTGAAAGACAATGTGATACTGAAGATTG 737
|||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 767 TTCCGCTAGACGTTGGAGCAGTGATCTGCATGTTGAAAGACAATGTGATACTGAAGATGG 826
Query 738 TGGTTGTGTCGGTAACGCTTGCATGGAGCTCATGGGCTGCTTACCCTTTCATGAGCTCAG 797
| |||||||| || || ||||| |||||||| ||||||||||| |||||||||||| | |
Sbjct 827 TCGTTGTGTCTGTGACTCTTGCCTGGAGCTCTTGGGCTGCTTATCCTTTCATGAGCGCCG 886
Query 798 CGGTTAACCCAAGAAGAAAAGCACTCGCTCTATACCCCGTCTTCCTCATGTATGTATCAG 857
| || ||||| ||||||||||| ||||| || ||||| ||||||||||||||||| || |
Sbjct 887 CAGTGAACCCGAGAAGAAAAGCTCTCGCACTCTACCCGGTCTTCCTCATGTATGTCTCTG 946
Query 858 TCGGTTTCCTCATCATCGCCATCAATT 884
| || ||| | ||||| ||||| ||||
Sbjct 947 TTGGCTTCTTAATCATTGCCATTAATT 973
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43452537155
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5