BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480852
Length=1323
Score E
Sequences producing significant alignments: (Bits) Value
AT2G18780.1 | Symbols: | F-box and associated interaction doma... 1456 0.0
> AT2G18780.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr2:8136758-8138118 REVERSE LENGTH=1361
Length=1361
Score = 1456 bits (788), Expect = 0.0
Identities = 1000/1102 (91%), Gaps = 15/1102 (1%)
Strand=Plus/Plus
Query 1 CAACGACGATGCTCTCCGATCTTCCAAAGGATTTGGCAGAGGAGGTGCTCTCTAAGTTTC 60
|||||||||||||||| ||||||||||||||| |||| |||||||||||||| |||||||
Sbjct 37 CAACGACGATGCTCTCGGATCTTCCAAAGGATGTGGCGGAGGAGGTGCTCTCGAAGTTTC 96
Query 61 CGGTGACATCTCTGAGAAGAGTGCGATTCACTTGCAAGAAA-TGGAACACATTATCCAAA 119
| |||||||||||||||||||| |||||||| ||||| ||| | |||||| |||||||||
Sbjct 97 CAGTGACATCTCTGAGAAGAGTACGATTCACATGCAA-AAAGTTGAACACTTTATCCAAA 155
Query 120 GATGGGTCTTTTACAAGGAAGCACATTGATAAAGAAGAAGCAAAGAAGAGGCAGAAG-AA 178
||| ||||||||||||||||||||| |||||||||||||||||||||| |||| || ||
Sbjct 156 GATATGTCTTTTACAAGGAAGCACATCGATAAAGAAGAAGCAAAGAAGAAGCAG-AGTAA 214
Query 179 GGAGTTTCACGTTGTGATGATGCTCGATTTTAGGGTTTCTTTATTCAGCCTCAATCTTCT 238
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 215 GGAGTTTCATGTTGTGATGATGCTCGATTTTAGGGTTTCTTTATTCAGTCTCAATCTACT 274
Query 239 CAAA-CCTAATTGCGTAGAGCGTTTAGGTCAACTTATTAGCCTAGATGATGCTG-ATCAA 296
||| |||||| | |||||||||||||||||||| ||||| |||| | || || | |||
Sbjct 275 -AAACCCTAATCCCATAGAGCGTTTAGGTCAACTTGTTAGCTTAGACGGTGGTGCA-CAA 332
Query 297 GTCGACATTTCTAACATCTTTCACTGCGATGGTTTCTTGCTGTGCACCACCAAAGACATG 356
|||||||| |||||||| ||||||||||| ||||||||| | |||||||| ||||||||
Sbjct 333 GTCGACATATCTAACATTTTTCACTGCGAGGGTTTCTTGTTATGCACCACTAAAGACATA 392
Query 357 TCTAGGCTTGTTGTTTGGAACCCTTGTGTTGGGCAAACAATTTGGATCAACCCCAGAAAA 416
|||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 393 TCTAGGGTTGTTGTTTGGAACCCTTGTGTTGGGCAAACAATTTGGATCAAACCCAGAAAC 452
Query 417 TCTTTCAACAAATTGGATAGGTACGCTTTGGGTTACGATGTGATGAAGAATCATAAAGTT 476
||||||||||||| ||||||||| ||| |||| |||||||||||||||||||||||||||
Sbjct 453 TCTTTCAACAAATGGGATAGGTATGCTCTGGGCTACGATGTGATGAAGAATCATAAAGTT 512
Query 477 TTGAGATTTGTGGATCACTGTAACTATAGAACTGA-ACCCTTACTTCGTGAGTTTGAAAT 535
||||||||||||||| || || | ||| ||| || || ||||||| |||||||||||||
Sbjct 513 TTGAGATTTGTGGATGACGGTGAGTATGGAA-GGAGACACTTACTTTGTGAGTTTGAAAT 571
Query 536 CTATAGTTTTGAGTCTGATTCATGGAAGGTTCTTGATGTGAATCCGGATTGGGAGGTAGA 595
||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 572 CTACAGTTTTGAGTCTGATTCATGGGAGGTTCTTGATGTGAATCCGGATTGGGAGATAGA 631
Query 596 TTTTGTTCACCGTGGTTTGTCTGTTGATGGGAACAGTTATTGGTTTGCTA-GAGACAAGG 654
|||||||||||||||||||||| | ||||| |||||||| |||||||| | |||||||||
Sbjct 632 TTTTGTTCACCGTGGTTTGTCTATCGATGGAAACAGTTACTGGTTTGC-ACGAGACAAGG 690
Query 655 -T-TTCTATATgg-gggggAGGTCATTCGTATTTCTTGCTGTGTTTTGATTTCACAACGG 711
| ||| |||||| || || || ||| |||||||||||||||||||||||||||||||
Sbjct 691 TTGTTCCATATGGAGGACAAGATCCTTCTTATTTCTTGCTGTGTTTTGATTTCACAACGG 750
Query 712 AGAGATTTGGACCGCGTCTGGCTCTGCCTTTTCAGCCTTTCTTTGGTGATACTGTGGCTC 771
|||||||| |||||| |||| ||||||| |||||||||| ||||||||||||||||||||
Sbjct 751 AGAGATTTAGACCGCCTCTGCCTCTGCCATTTCAGCCTTACTTTGGTGATACTGTGGCTC 810
Query 772 TATCTAGTGTTGGGGATAACCAGATTGCGGTGTTGTGTCAGCTGTCTTCTTCTCCGTATA 831
||||||| ||||||||||||||||||||||| |||||||||| ||||||||| |||||||
Sbjct 811 TATCTAGCGTTGGGGATAACCAGATTGCGGTCTTGTGTCAGCGGTCTTCTTCGCCGTATA 870
Query 832 CATTGAAGATATGGATTAGCAGCAAGATTGAACCCAATGCAGTGTCGTGGAACAAGTTGT 891
| |||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct 871 CCTTGAAGATATGGATTAGCAGCAAGGTTGAGCCCAATGCAGTGTCGTGGAACAAGTTGT 930
Query 892 TCTTAAAGGTTGATATGAAACCTCTCACTGGTGTTTCGTTCTCTTATTCGGGTGGGAGTT 951
||||||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 931 TCTTAAAGGTTGACATGAAACCTCTCACTGGTAATTCCTTCTCTTATTCGGGTGGGAGTT 990
Query 952 TCTTCGTTGATGAGGAGAAGAAGGTTGCCGTGGTTCTTGATaaaaaaaTTGGTGGTGGAT 1011
|||| ||||| |||||||||||| | || ||||||||||||||||| || ||||||||||
Sbjct 991 TCTTTGTTGACGAGGAGAAGAAGATGGCTGTGGTTCTTGATAAAAACATAGGTGGTGGAT 1050
Query 1012 TTGACCCAACTCGAAACATAGCTTATATCATTGGAAAGGAGGGCTACTTCAAGAAAGTTG 1071
||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1051 TTGACCCGACTCGCAACATAGCTTACATCATTGGAAAGGAGGGCTACTTCAAGAAAGTTG 1110
Query 1072 ATCTTGGCGAATCTAGGAACCT 1093
||||||||||||||||| ||||
Sbjct 1111 ATCTTGGCGAATCTAGGCACCT 1132
Score = 110 bits (59), Expect = 5e-23
Identities = 95/111 (86%), Gaps = 7/111 (6%)
Strand=Plus/Plus
Query 1213 TCTAGGAACCTAACTTGTTGGCCACTTGGGTGCTCTTATGTTCCCAGCTCTGTCCAAATC 1272
|||||| |||||||||||||||||||||||||||||||| ||||||||||| | ||||||
Sbjct 1132 TCTAGGCACCTAACTTGTTGGCCACTTGGGTGCTCTTATATTCCCAGCTCTCTGCAAATC 1191
Query 1273 AACCACAAAACAGCCTAATCTTTGTGTCCACGTCTTTGTCTTGTAGATTTT 1323
|| || || ||||||||||| | |||||||||||| |||||||||
Sbjct 1192 AATCAGAATACAGCCTAATC-------CAACGTCTTTGTCTAGTAGATTTT 1235
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65110106865
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5