BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480853
Length=1081
Score E
Sequences producing significant alignments: (Bits) Value
AT2G18770.1 | Symbols: | P-loop containing nucleoside triphosp... 1572 0.0
> AT2G18770.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr2:8134639-8136560
FORWARD LENGTH=1103
Length=1103
Score = 1572 bits (851), Expect = 0.0
Identities = 1014/1092 (93%), Gaps = 14/1092 (1%)
Strand=Plus/Plus
Query 1 AACAACAACAATTTCGCCGGCGTCGTC-TC--C-TC-CTCCATCACCGTCGCTGCTGCTT 55
||||||||||||||||||||||||||| || | || ||||||||||||| ||||||| |
Sbjct 12 AACAACAACAATTTCGCCGGCGTCGTCGTCGTCGTCTCTCCATCACCGTCTCTGCTGCAT 71
Query 56 TGATTCGCAGCAGTGAGTCCT-CATTGT-TA-TGTTTTGAAGGTGCACGAAAATGGATAA 112
|||||||||||| |||||||| ||| | | ||| || | || ||||||||| ||
Sbjct 72 TGATTCGCAGCACTGAGTCCTAAATT-TCCAGTGTAAAAAAAAT-CA-GAAAATGGACAA 128
Query 113 CTTGGAAGACTTGAAGATTGTGACAGAGCAGTGGTGGAAACAAGGAATTGAATTTGTTCA 172
||||||||| |||||||||||| |||||||||||| ||||||||| |||||||||||||
Sbjct 129 CTTGGAAGATTTGAAGATTGTGGCAGAGCAGTGGTCTAAACAAGGACTTGAATTTGTTCA 188
Query 173 ACAGATACCACCGCCTCAGCTTTATACTGCTATTGGTGTTCTCTTATTAGCTACCATTTG 232
| | |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 189 AAAAATACCACCACCTCAGCTTTATACTGCCATTGGTGTTCTCTTATTAGCTACCATTTG 248
Query 233 GCTCTTATCTATTCGTTTGTTTAGGCGTACAAAGTCCAATACTGTACTCCTCTCTGGGCT 292
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 249 GCTCTTATCTATTCGTTTGTTTAGACGTACAAAATCCAATACTGTACTCCTCTCTGGGCT 308
Query 293 AAGTGGAAGTGGCAAAACAATGCTCTTCTTTCAACTACGTGATGGATCTTCGCACCAAGG 352
||||||||||||||||||| | ||||||| ||||||||| ||||||||||| || || ||
Sbjct 309 AAGTGGAAGTGGCAAAACAGTTCTCTTCTATCAACTACGAGATGGATCTTCCCATCAGGG 368
Query 353 TGCTGTAACGTCAATGGAACCAAACGAAGGCACCTTTGTGCTTCACAATG--AA-AACAC 409
||||||||||||||||||||| |||||||||||||||||||||||||||| || |||||
Sbjct 369 TGCTGTAACGTCAATGGAACCGAACGAAGGCACCTTTGTGCTTCACAATGAAAACAACAC 428
Query 410 TATGAAAGGAAAAATAAAGCCTATTCATCTTGTTGATGTTCCTGGACACTCTCGGCTTAG 469
|| |||||||||| |||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 429 TAAGAAAGGAAAAGTAAAGCCTGTTCATCTTATTGATGTTCCTGGACACTCTCGGCTTAT 488
Query 470 ATCTAAGCTAGAAGAATACTTGCCTCGAGCAGCCGCTGTTGTGTTTGTAGTAGATGCATT 529
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 489 ATCTAAGCTAGAAGAATACTTGCCTCGAGCCGCCGCTGTTGTGTTTGTAGTAGATGCATT 548
Query 530 GGAGTTCCTCCCAAATATCCGGGCAGCTTCAGAGTACCTTTACGACATTCTGACAAATGC 589
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 549 GGAGTTCCTCCCAAATATCCGGGCAGCTTCAGAGTACCTTTACGACATTCTGACCAATGC 608
Query 590 TAGCGTTGTTAAGAATAAGATCCCGGTTCTGCTTTGCTGTAACAAGACAGACAAAGTAAC 649
||||||| |||||||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct 609 TAGCGTTATTAAGAATAAGACCCCGGTTCTGCTTTGCTGTAACAAGACAGATAAAGTAAC 668
Query 650 TGCACACACCAAAGAGTTCATCCGCAAGCAGATGGAGAAAGAAATAGAGAAACTTAGGGT 709
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 669 TGCACACACCAAAGAGTTCATCCGCAAGCAGATGGAGAAAGAAATAGATAAACTTAGGGT 728
Query 710 TTCGAGGAGCGCGATATCAACAGCTGATATAGCGAATGACTTCACTCTCGGGATTGAAGG 769
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 729 TTCGAGGAGCGCAATATCAACAGCTGATATAGCGAATGACTTCACTCTTGGGATTGAAGG 788
Query 770 AGAAGTGTTTTCCTTTTCGCATTGCCAGAACAAAGTCACGGTCGCTGAGGCGTCTGGACT 829
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 789 AGAAGTGTTTTCCTTTTCGCATTGCCATAACAAAGTCACGGTCGCTGAGGCGTCTGGACT 848
Query 830 AACAGGAGAAACAGATCAGGTACAAGAGTTCATCAGAGAACACGTTAAGCCATGAGAAAT 889
||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |
Sbjct 849 AACAGGAGAAACAGATCAGGTACAAGAGTTCATCAGAGAACACGTAAAGCCATGAGGATT 908
Query 890 GTGTGAGCATATCAGAGAATGAACTTAAATGTCTTTTCAtttttttGTACATGAAATTAT 949
|||| ||||| |||||||||| |||||||||||||||||||| |||||| ||||||||||
Sbjct 909 GTGTAAGCATCTCAGAGAATGTACTTAAATGTCTTTTCATTTGTTTGTAAATGAAATTAT 968
Query 950 AATTTGAGAATTTAGATGATATTTGTTGGAAGGATTTCTGGATGTCGAAAACTTGTTTAA 1009
|||||||||| |||||||||||| ||||||||||||| ||||||| |||||| ||||||
Sbjct 969 AATTTGAGAACTTAGATGATATTCGTTGGAAGGATTTTTGGATGTTGAAAACGTGTTTAC 1028
Query 1010 TGCATCGACTGGATCTTTTAGCGTTTTGTCCAAGCAACCTCACTATAAATAAATTGTTAA 1069
|||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |
Sbjct 1029 TGCATCGACTGGATCTTTTAGCGTTTCATCCAAGCAACCTCACTATCAATAAATTGTTTA 1088
Query 1070 CACAGACAGTTT 1081
|| |||||||||
Sbjct 1089 CAAAGACAGTTT 1100
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52961574975
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5