BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480858
Length=3119
Score E
Sequences producing significant alignments: (Bits) Value
AT2G20300.1 | Symbols: ALE2 | Protein kinase superfamily protei... 4852 0.0
> AT2G20300.1 | Symbols: ALE2 | Protein kinase superfamily protein
| chr2:8755925-8760222 REVERSE LENGTH=3162
Length=3162
Score = 4852 bits (2627), Expect = 0.0
Identities = 2959/3113 (95%), Gaps = 48/3113 (2%)
Strand=Plus/Plus
Query 1 TTCAAATTCACTTTActctcttctcttccaatctctctctACCACTCTGATACCTTCGCC 60
||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 8 TTCGAATTCACTTTACTCTCTTCGCTTCCAATCTCTCTCTACCACTCTGATACCTTCGCC 67
Query 61 -G-G-AGAAGTTCTCGTTCTCTCTATCGCCGGAGAAGCTCTCGTTCTCTGCTTCCCTGCT 117
| | ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 68 GGAGAAGAAGCTCTCGTTCTCTCTATCGTCGGAGAAGCTCTCGTTCTCTGCTTCCCTGCT 127
Query 118 CTGTACAGATCTCGAGCCGCATTTCGTGGATCTGTCAAAATCGCGTTAAAACCTACTCGC 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 128 CTGTACAGATCTCGAGCCGCATTTCGTGGATCTGTCAAAATCGCGTTAAAACCTACTCGC 187
Query 178 TTCTCTCTAACCCTAGGGtttttgattttttttttCCGGAGGAAGGAGAAATCAATGTCT 237
||||||||||||||||||||||||| |||||||| ||| || ||||||||||||||||
Sbjct 188 TTCTCTCTAACCCTAGGGTTTTTGA--ATTTTTTTCGGGACGAGGGAGAAATCAATGTCT 245
Query 238 GTGAAGCTTTGAGGAAG-T-TATGGTTAGACGTTTGGTTCTGGTTAGTCTTCGTTTTGAT 295
||||||||||||||||| | |||||||| || ||||||||||||||||||||||||||||
Sbjct 246 GTGAAGCTTTGAGGAAGCTATATGGTTACACCTTTGGTTCTGGTTAGTCTTCGTTTTGAT 305
Query 296 CGGCGGAGAATGTCCGGCGAGGCTTGGTGTCTCCGTTGCTGACTAATGGTGGTTTTTGAT 355
||||||||| ||| || |||||||||||||||||||| |||||||||||||||||||||
Sbjct 306 CGGCGGAGAGTGTTCGCCGAGGCTTGGTGTCTCCGTTATTGACTAATGGTGGTTTTTGAT 365
Query 356 TTGAGATAA-AGATGCGGAACTTTGCGATGCTTCTACTGTTAATTCTTCTTCTTCACTCT 414
||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 366 TTGAGATAAGAGATGCGGAACTTTGCGATGCTTCTGCTGTTAATTCTTCTTCTTCACTCT 425
Query 415 CTCGCCTCGTTTCCTATATGCTTTGCTCGGCTATTTCCGATGAGCTTGCCATTTACCCGA 474
|||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 426 CTCGCCTCGTTTCCTATATGCTTTGCTCGGTTATTTCCGATGAGTTTGCCATTTACCCGA 485
Query 475 TCAAAGTCGCATCAAATGCAtttttttCATCCTCATCTTAATCCATCAGTTGCTCCTACA 534
|||||| |||||||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 486 TCAAAGGCGCATCAAATGCATTTCTTTCATCCTTATCTTAATCCATCAGTTGCTCCTACA 545
Query 535 CCTTCACCAGCTTTGCCCCCCTACCCAAGCCGCATTCCACCACTAAGGCACAGGGGTCAT 594
|||||||||||||| ||||| ||||||| |||||||||||||||||||||| |||||||
Sbjct 546 CCTTCACCAGCTTTTTCCCCCAACCCAAGTCGCATTCCACCACTAAGGCACAAGGGTCAT 605
Query 595 CACCATCATCGTCGCTGGCATTTAAGACGCAATGCCACTGCAGTTTCACCTTCGTCACAT 654
|||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 606 CACCGTCATCGTCGCTGGCATTTAAGACGCAATGCCACTGCAGTGTCACCTTCGTCACAT 665
Query 655 GACTGTCAGCAGACATGTGTGGAGCCTCTCACTTCAACTCCCTTTGGTTCACCTTGTGGT 714
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 666 GACTGTCAGCAGACATGTGTGGAGCCTCTCACTTCAACTCCCTTTGGTTCACCTTGTGGT 725
Query 715 TGTGTATTCCCCATGAAAGTTCAGCTTCTACTAAGTGTCGCACCTTTTTCTATTTTCCCC 774
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 726 TGTGTCTTCCCCATGAAAGTTCAGCTTCTACTAAGTGTCGCACCTTTTTCTATTTTCCCC 785
Query 775 GTGACCAACGAGTTAGAAATTGAGGTTGCTGCTGGAACATACTTGGAACAAAGCCAAGTG 834
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 786 GTGACCAACGAGTTAGAAATTGAGGTTGCTGCTGGAACATACTTGGAACAAAGCCAAGTG 845
Query 835 AAAATAATGGGTGCCAGTGCCGACAATGAAAATCAAGGGAAAACAGTGGTGGATATTAAC 894
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 846 AAAATAATGGGTGCCAGTGCCGACAGTGAAAATCAAGGGAAAACAGTGGTGGATATTAAC 905
Query 895 CTTGTTCCACTTGGGGAAAAGTTCGACAACACTACAGCAACACTTATTTATCAGAGATTC 954
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 906 CTTGTTCCACTTGGGGAAAAGTTCGACAACACTACAGCAACACTTATTTATCAGAGATTC 965
Query 955 CGGCACAAGAAAGTACCTCTAAATGAGACTGTTTTTGGTGATTATGAGGTTACACACATA 1014
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 966 CGGCACAAGAAAGTACCTCTAAATGAGACTGTTTTTGGTGATTATGAGGTTACGCACATA 1025
Query 1015 AGTTATCCAGGAATTCCTTCTTCTTCGCCAAATGGAGCTGTTACTGCAGATGCTCCAGGA 1074
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 1026 AGTTATCCAGGAATTCCTTCTTCTTCGCCAAATGGAGATGTTACTGGAGATGCTCCAGGA 1085
Query 1075 GGCTTTCCAATTCCAATCAATG---CAACTTTTGCCAACAAAAGCGAGGGAATAGGTTTT 1131
||| |||||||||| ||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 1086 GGCCTTCCAATTCCGATCAATGCAACAACTTTTGCCAACAAAAGCCAGGGAATAGGTTTT 1145
Query 1132 AGAACGATTGCAATCATTGCGTTGTCAGGTTTTGTCCTCATTCTGGTTTTGGTTGGAGCT 1191
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1146 AGAACGATTGCAATTATTGCGTTGTCAGGTTTTGTCCTCATTCTGGTTTTGGTTGGAGCT 1205
Query 1192 ATATCTATAATCGTGAAATGGAAGAAAATTGGGAAGTCATCTAATGCTGTTGGCCCTGCT 1251
|| |||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 1206 ATTTCTATAATCGTGAAATGGAAGAAAATTGGGAAGTCATCTAATGCTGTTGGTCCGGCT 1265
Query 1252 TTGGCTCCATCGATTAACAAAAGGCCTGGTGCTGGATCTATGTTTTCCAGTAGCGCCAGA 1311
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1266 TTGGCTCCATCGATTAACAAAAGGCCTGGTGCTGGATCTATGTTTTCCAGTAGCGCCAGA 1325
Query 1312 AGCTCAGGATCAGATTCTTTGATGTCTTCCATGGCTACATGTGCTTTATCCGTTAAGACC 1371
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1326 AGCTCAGGCTCAGATTCTTTGATGTCTTCCATGGCTACATGTGCTTTATCAGTTAAGACC 1385
Query 1372 TTCACACTCTCCGAGCTTGAGAAGGCAACTGATAGATTCAGTGCCAAGAGGGTTTTGGGC 1431
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1386 TTCACACTCTCCGAGCTTGAGAAGGCTACTGATAGATTCAGTGCCAAGAGGGTTTTGGGC 1445
Query 1432 GAGGGTGGATTTGGACGTGTTTATCAGGGGAGCATGGAAGATGGAACCGAGGTTGCAGTG 1491
||||| |||||||| ||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 1446 GAGGGCGGATTTGGTCGTGTTTATCAGGGGAGTATGGAAGATGGAACTGAGGTTGCAGTG 1505
Query 1492 AAACTGCTAACTAGGGACAATCAGAATCGAGACCGTGAATTTATTGCCGAAGTCGAGATG 1551
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1506 AAACTGCTAACTAGGGACAATCAGAATCGAGACCGTGAATTTATTGCCGAAGTCGAGATG 1565
Query 1552 TTAAGCCGTTTGCACCACCGCAATCTTGTGAAACTGATTGGAATATGCATTGAAGGCCGT 1611
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1566 CTAAGCCGTTTGCACCACCGCAATCTTGTGAAACTGATTGGAATATGCATTGAAGGTCGT 1625
Query 1612 ACACGTTGCTTGATTTATGAGCTCGTCCACAATGGGAGTGTCGAGTCCCACTTGCACGAA 1671
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 1626 ACACGTTGCTTGATTTATGAGCTCGTCCACAATGGGAGTGTTGAGTCCCACTTACACGAA 1685
Query 1672 GGAACACTTGATTGGGATGCACGGTTGAAGATTGCACTTGGAGCAGCGAGAGGACTGGCT 1731
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1686 GGAACGCTTGATTGGGATGCGCGGTTGAAGATTGCACTTGGAGCAGCGAGAGGACTGGCT 1745
Query 1732 TATCTCCATGAAGATTCAAATCCCCGAGTAATCCACCGTGATTTCAAGGCTAGCAATGTT 1791
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1746 TATCTCCATGAAGATTCAAATCCCCGAGTAATCCACCGTGATTTCAAGGCTAGCAATGTT 1805
Query 1792 CTCCTAGAAGATGACTTTACCCCAAAAGTCTCAGACTTTGGACTGGCAAGAGAAGCAACA 1851
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1806 CTCCTAGAAGATGACTTTACCCCAAAAGTCTCAGACTTTGGACTGGCAAGAGAAGCAACC 1865
Query 1852 GAAGGAAGTCAACATATTTCAACTCGAGTCATGGGCACCTTTGGGTACGTGGCTCCTGAG 1911
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1866 GAAGGAAGTCAACATATTTCAACTCGAGTCATGGGGACCTTTGGGTACGTGGCTCCTGAG 1925
Query 1912 TATGCAATGACGGGGCATCTCCTTGTTAAAAGCGATGTTTATAGTTACGGTGTGGTTCTA 1971
|||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||
Sbjct 1926 TATGCAATGACGGGGCATCTCCTTGTTAAAAGCGATGTCTATAGTTATGGTGTAGTTCTA 1985
Query 1972 CTAGAGCTTCTCACCGGTAGAAGACCGGTAGACATGTCTCAACCTTCGGGAGAGGAAAAC 2031
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1986 CTAGAGCTTCTAACCGGTAGAAGACCAGTAGACATGTCTCAACCTTCGGGAGAGGAAAAC 2045
Query 2032 CTTGTGACATGGGCGAGACCCTTACTAGCCAACAGAGAGGGCCTGGAGCAACTAGTGGAC 2091
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2046 CTTGTGACATGGGCGAGACCCTTACTAGCCAACAGAGAGGGCCTGGAGCAACTGGTGGAC 2105
Query 2092 CCTGCATTGGCTGGAACCTACAACTTTGATGACATGGCGAAAGTGGCTGCGATTGCCTCC 2151
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2106 CCTGCATTGGCTGGAACCTACAACTTTGATGACATGGCGAAAGTGGCTGCGATTGCCTCC 2165
Query 2152 ATGTGCGTCCACCAAGAGGTCTCACACAGACCATTCATGGGAGAAGTTGTGCAGGCACTG 2211
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2166 ATGTGCGTCCACCAAGAGGTCTCACACAGACCATTCATGGGTGAAGTTGTGCAGGCACTA 2225
Query 2212 AAACTTATATACAACGATGCAGATGAGACCTGTGGTGACTATTGCAGCCAAAAGGACTCA 2271
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2226 AAACTTATATACAACGATGCAGATGAGACCTGTGGTGATTATTGCAGCCAAAAGGACTCA 2285
Query 2272 TCAGTACCAGACTCTGCTGATTTCAAAGGCGATCTGGCTCCTTCGGATAGCAGCTGGTGG 2331
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2286 TCAGTACCAGACTCTGCTGACTTCAAAGGCGATCTGGCTCCTTCGGATAGCAGCTGGTGG 2345
Query 2332 AATTTGACACCTCGATTAAGGTATGGTCAAGCTTCGTCGTTCATAACAATGGAATATAGC 2391
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2346 AATTTGACACCTCGGTTAAGGTATGGTCAAGCTTCGTCGTTCATAACAATGGATTATAGC 2405
Query 2392 TCAGGACCACTAGAGGACATGGAGAACCGGCCTCACTCTGCCTCTAGCATTCCAAGAGAA 2451
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2406 TCAGGACCACTAGAGGACATGGAGAACCGGCCTCACTCTGCCTCTAGCATTCCAAGAGTA 2465
Query 2452 GGAGGCCTTATTCTACCAAACAGATCGGGTCCATTAAGACCCATGCGTAGTCGAAGAAAC 2511
||||| |||||||||||||||||||| ||||| |||||||||||||||||| ||||||||
Sbjct 2466 GGAGGTCTTATTCTACCAAACAGATCAGGTCCGTTAAGACCCATGCGTAGTAGAAGAAAC 2525
Query 2512 TTCTTTAGACTGAGAGGAAGCATGAGCGAACACGGTGGACCGTCGTCTTCTAGACATCTC 2571
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2526 TTCTTTAGACTGAGAGGAAGCATGAGCGAACACGGTGGACCGTCGTCGTCTAGACATCTC 2585
Query 2572 TGGTCCGGCAATGGCGACTGGCTCTAAGAAACCAGAAAATGTACAGAGAAGAAAAGGGAA 2631
|||||||||||||| |||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 2586 TGGTCCGGCAATGGTGACTGGCTCTGAGAAACCAGAAAATGTACAGTGAAGAAAAGGGAA 2645
Query 2632 AGAGGAAAAGGAGGCTCACAA-CTCTTGAGCTGCATGGTTAGGTTGTGGTTAATCCGGTT 2690
| |||| || ||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 2646 A-AGGA---GG---CTCACAAACTCTTGAGCTGCATGGTTAGGTTCTGGTTAATCCGGCC 2698
Query 2691 TGGTTCGGTGGTTCTGGGTAAAGACTTTCCGGTTTGATTTCTTTTAGGAGTTCttttttt 2750
|||||||| |||||||||||| ||||||||||||||||||||||||| || ||| |
Sbjct 2699 AGGTTCGGTTCATCTGGGTAAAGA-TTTCCGGTTTGATTTCTTTTAGGAG--CTGTTTGT 2755
Query 2751 tttgttttgtttttCCTCAATAGAAGATT-AATTGTTTGTTTTTGCGAGGATGCAAAAGC 2809
| ||| || || ||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct 2756 T--GTTATGATTATCCTCAATAGA-GATTTAATTGTTTGTTTTTGCGAGGATGCAAAAGC 2812
Query 2810 ACAGGAAGGGCTGTATTTTAAAGGACGTCTGTATTTAGTTCTCTC-TTCTTCTCTTTCTC 2868
||||| |||| |||||||| ||||||| ||||||||||||||||| || |||||| |||
Sbjct 2813 ACAGGGAGGGTTGTATTTTGAAGGACGCCTGTATTTAGTTCTCTCCTT-TTCTCT--CTC 2869
Query 2869 CCCCACAAAAAA-CAttttttattttttttattttagtgaagttagttattacctatttt 2927
||||||||||| ||||||| || | ||||||||||||||||||||| |||||||| |||
Sbjct 2870 ACCCACAAAAAAACATTTTT-ATATATTTTATTTTAGTGAAGTTAGTAATTACCTAATTT 2928
Query 2928 ttttttagtttttCAAGTTCCTAAGAATTTTGGCTTTTGGTCATCGTTGTTTAGTTTCCG 2987
||||| ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 2929 TTTTT-AGTTTTTCAAGTTCCTAAGAAATTTGGCTTTTGGTCATCGTTGTTAAGTTTCCG 2987
Query 2988 GTTCTCAAAATTTAAATCCGAAGTATTTTTTGGTTAAATAAATTTCTGGCTTG-G-G-A- 3043
||| || |||||| ||||||| ||||||||||||||||||| |||||||||| | | |
Sbjct 2988 GTTTTCTGAATTTACATCCGAAATATTTTTTGGTTAAATAAAATTCTGGCTTGAGAGTAA 3047
Query 3044 --G--TGGT-AA------CAAGTCACTTGGTCAAAGCTGTTGTAATGCTTTTC 3085
| |||| || |||||||||||||||||||||||||||| ||||||
Sbjct 3048 TTGGCTGGTGAATGGTAACAAGTCACTTGGTCAAAGCTGTTGTAATTCTTTTC 3100
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 155116187756
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5