BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg480862

Length=501
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G20350.1 | Symbols:  | Integrase-type DNA-binding superfamil...   632    0.0  


> AT2G20350.1 | Symbols:  | Integrase-type DNA-binding superfamily 
protein | chr2:8784769-8785396 FORWARD LENGTH=477
Length=477

 Score =  632 bits (342),  Expect = 0.0
 Identities = 441/485 (91%), Gaps = 21/485 (4%)
 Strand=Plus/Plus

Query  1    ATGGAAAATTCAGAAAATGTTCCCTCTTACGATCAAAACAACAACTTCACTCCTTATTTG  60
            |||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |||||
Sbjct  1    ATGGAAAATTCAGAAAATGTTCCCTCTTACGATCAAAACATCAATTTCACTCCTAATTTG  60

Query  61   ACGAGAGATCAAGAACATGTGATCATGGTCACTGCTTTGCGACAAGTGATATCCAACTTC  120
            |||||||||||||||||||||||||||||| ||||||||| |||||| ||||||||| ||
Sbjct  61   ACGAGAGATCAAGAACATGTGATCATGGTCTCTGCTTTGCAACAAGTAATATCCAACGTC  120

Query  121  GGAAGTGACACTCCATGTCTCCATCACCCAACTCGATCGAATGCATGGGAAGCTCATCTT  180
            || || |        ||     | || | ||  |  |||||||||||||||||| |||||
Sbjct  121  GG-AG-G--------TG-----A-CA-CGAA--C--TCGAATGCATGGGAAGCTGATCTT  159

Query  181  CCACCTTTGAATGCTGGTCCTTGTCCTCTTTGTAGTATCACCGGCTGCTACGGTTGCGTC  240
            ||||||||||| ||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct  160  CCACCTTTGAACGCTGGCCCTTGTCCTCTTTGTAGTGTCACCGGCTGCTACGGTTGCGTC  219

Query  241  TTCCCACGACACGAAGAGATAATTAGGAAGGAGAAGAAGCACAAAGGAGTGAGGAAAAAG  300
            |||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||| 
Sbjct  220  TTCCCACGACACGAGGCGATAATTAAGAAGGAGAAGAAGCACAAAGGAGTGAGGAAAAAA  279

Query  301  CCATCAGGTAAATGGTCGGCGGAGATATGGGATCCGAGTTTGAAAGTAAGGAGATGGCTT  360
            ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  280  CCATCAGGTAAATGGGCGGCGGAGATATGGGATCCGAGTTTGAAAGTAAGGAGATGGCTT  339

Query  361  GGAACGTTTCCAACAGCGGAGATGGCGGCTAAGGCTTACAACGATGCGGCGGCTGAACTT  420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||
Sbjct  340  GGAACGTTTCCAACAGCGGAGATGGCGGCTAAGGCTTACAACGATGCGGCGGCTGAGTTT  399

Query  421  GTCGTAAGAAGACCAGCTAGACGTGGCACAAAGAACGGAGAGGAAGCATCAACCAAGAAG  480
            |||| ||||||| |||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct  400  GTCGGAAGAAGATCAGCAAGACGTGGCACAAAGAACGGAGAGGAAGCATCTACCAAGAAG  459

Query  481  ACGAC  485
            |||||
Sbjct  460  ACGAC  464



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23911453972


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5