BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg480864

Length=530
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G20362.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   689    0.0  


> AT2G20362.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: cellular_component unknown; BEST Arabidopsis 
thaliana protein match is: unknown protein (TAIR:AT1G63310.1); 
Has 30201 Blast hits to 17322 proteins in 780 species: 
Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; 
Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: 
NCBI BLink). | chr2:8789740-8790358 FORWARD LENGTH=619
Length=619

 Score =  689 bits (373),  Expect = 0.0
 Identities = 431/459 (94%), Gaps = 4/459 (1%)
 Strand=Plus/Plus

Query  1    AAATGGAAGATGACGGAGACTATCCCGAACCCGAATCTGGCAGTGGTGGAATCAACTTGA  60
            |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct  31   AAATGGAAGATGACGGAGACTATCCCGAACCCGAATCTGGCAGTGGTGGAATAAACTTAA  90

Query  61   ATGGGAGAAATGTTGGTGCGGTGATGGTGGCGCCTAGGGATGTAGACATAGCGAGTCAAA  120
            | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  91   ACGGGAGAAATGTTGGTGCGGTGATGGTGGCGCCTAGGGATGTAGACATAGCGAGTCAAA  150

Query  121  GTGGTTGCAGGATCAACATCTACGTGAACAGCAATGTTCAAGCAACATGTGGTTCAGCTT  180
            |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct  151  GTGGTTGCAGGATCAATATCTACGTGAACAGCAATGTTCAAGCAACATGTGGTTCAGCTT  210

Query  181  TGATAGGTAGCAAGGTTAAGCTAAGAGATCCCGGTGTTCATCTCCATATCGAAGACGTTA  240
            |||| |||||||||||||||||||||||||| ||||||||||||||||| || |||||||
Sbjct  211  TGATCGGTAGCAAGGTTAAGCTAAGAGATCCTGGTGTTCATCTCCATATAGATGACGTTA  270

Query  241  AAATGACCCGCGACGATAACATATCTAGACAGAAGGAGATGAGCTTGATTAAGGTTGGGT  300
            |||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct  271  AAATGACCCGCGACGATACCATATCTAGACAGAAGGAGATGACCTTGATTAAGGTTGGGT  330

Query  301  TATGTTTGGTCTGTCTCTTTAACATCTTTTTAGTATTCATTATCTTCATCTCCTCTTGGT  360
            |||||||||||||||| |||||||| ||| ||||||||||| ||||| ||||||||||||
Sbjct  331  TATGTTTGGTCTGTCTTTTTAACATGTTTCTAGTATTCATTCTCTTCCTCTCCTCTTGGT  390

Query  361  TCCGGAAGAAAACTGGTTCCATATAGATCTCTCCTCATGAACTGATGTTCATGCTAAGAA  420
            |||||||| ||| ||||||| |||||||||| || ||| ||| |||| ||||||||||||
Sbjct  391  TCCGGAAGGAAAGTGGTTCCGTATAGATCTC-CC-CATCAACCGATGATCATGCTAAGAA  448

Query  421  GTAAGAACTATCTCGTCC-ATAATTACTTCCTCGATTTA  458
            |||||||| |||||| || ||||||  ||||||||||||
Sbjct  449  GTAAGAACGATCTCG-CCTATAATTGTTTCCTCGATTTA  486


 Score =  106 bits (57),  Expect = 2e-22
 Identities = 67/72 (93%), Gaps = 0/72 (0%)
 Strand=Plus/Plus

Query  457  TAACGGTCAAAAACACATTTTATGTTGTATTAATTCATATCATTCCAGATTAAATCGAAG  516
            |||| ||||||||||||   |||||||| |||||||||||||||||||||||||||||||
Sbjct  540  TAACAGTCAAAAACACACCATATGTTGTCTTAATTCATATCATTCCAGATTAAATCGAAG  599

Query  517  ATTAATGCTATA  528
            ||||||||||||
Sbjct  600  ATTAATGCTATA  611



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25368244235


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5