BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480865
Length=2398
Score E
Sequences producing significant alignments: (Bits) Value
AT2G20370.1 | Symbols: KAM1, MUR3 | Exostosin family protein | ... 3742 0.0
> AT2G20370.1 | Symbols: KAM1, MUR3 | Exostosin family protein
| chr2:8791986-8794401 FORWARD LENGTH=2416
Length=2416
Score = 3742 bits (2026), Expect = 0.0
Identities = 2296/2421 (95%), Gaps = 39/2421 (2%)
Strand=Plus/Plus
Query 1 AGACCAGCTCAAAGCCAGGTCAAAAATTCATCGATCTTTGGCCTCATCAATGTTAAAAAT 60
||||||||||||||||||||| ||||| |||| ||| ||||||||||||||||||||||
Sbjct 12 AGACCAGCTCAAAGCCAGGTC-AAAATCCATCAATC-CTGGCCTCATCAATGTTAAAAAT 69
Query 61 CTTCACTTTCACACATCTCTAGATCTTCCCTTGAAGGATAAATAAAAAAGCTCTAATCTT 120
||| ||||||||||||||||||||||||| | ||||||| ||| ||||||| |||||||
Sbjct 70 CTTTACTTTCACACATCTCTAGATCTTCCATAGAAGGATCAAT-CAAAAGCTGTAATCTT 128
Query 121 TCTTTCTTCCTCGTAGCTCCTTCTCTTGCGGATCCTTGTCGGTACACTTCTACATTCTCA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 129 TCTTTCTTCCTCGTAGCTCCTTCTCTTGCGGATCCTTGTCGGTACACTTCTACATTCTCA 188
Query 181 AATCTGAATCCTTTCTGGATTTTTCTCTGCGCCTGAGCTACGATTTAGCTTCAATTACTT 240
||||||| ||||||||||| | ||| ||||||||||| || ||||||||||||||
Sbjct 189 AATCTGATTCCTTTCTGGA-----GT-TGCTCCTGAGCTACGGTTCAGCTTCAATTACTT 242
Query 241 CGATCTCGTGTAAAAACCACCTCTAG-A-----G----GCTTTGATAGGAGTTGGTTTTG 290
|||||||||||||||| ||| ||||| | | |||||||||||||||||||||
Sbjct 243 CGATCTCGTGTAAAAATCACTTCTAGAAGCTTTGATAAGCTTTGATAGGAGTTGGTTTTA 302
Query 291 CTCTTTA-GG----G-TTG-G-TTGATCTTT-TTCGTATAGATGTTTGTGATCTTCGTAC 341
||||||| || | ||| | ||||||||| || ||||||||| |||||||||||||||
Sbjct 303 CTCTTTAGGGTTTTGTTTGAGTTTGATCTTTATT-GTATAGATG-TTGTGATCTTCGTAC 360
Query 342 ACTC--TATATGATTCCAAGGGTTTCTATGAGGCGTCGCTCTGCAGAAGTTGCTCCTACA 399
|||| |||||| ||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 361 ACTCTATATATGTTTCCAAGGGTTTCTATGAGGCGTCGCTCTGCTGAAGTTTCTCCTACA 420
Query 400 GAGCCTATGGAGAAGGGAAATGGGAAGAATCAGACTAATCGAATCTGTTTGTTGGTTGCT 459
||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 421 GAGCCAATGGAGAAGGGAAATGGAAAAAATCAGACTAATCGAATCTGTTTGTTGGTTGCT 480
Query 460 TTATCACTCTTTTTCTGGGCATTGTTGTTGTACTTCCATTTTGTTGTCTTAGGGAGC-AG 518
|| |||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 481 TTGTCACTCTTTTTCTGGGCATTGTTGTTGTACTTCCATTTTGTTGTCTTAGGGA-CTAG 539
Query 519 TAACATTGATAAACAGATCCAATTGCAACCTAGTTATGCTCAGTCTCAGCCATCATCAAT 578
|||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |
Sbjct 540 TAACATTGATAAACAGCTCCAATTGCAACCTAGTTATGCTCAATCTCAGCCATCATCAGT 599
Query 579 CTCTCTTCGTGTTGATAAATTCCCTATAGAGCCCCATGCAGCTCCATCGAAACCACCTCC 638
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 600 CTCTCTTCGTGTTGATAAATTCCCTATAGAGCCTCATGCAGCTCCATCGAAACCACCTCC 659
Query 639 TAAAGAGCCTTTAGTTGCGATCGATAAGCCAGTACTCCCTCCTGCACCAGTAGCTAATTC 698
||||||||||||||| | |||||||||||| |||||||||||||||||||||| |||||
Sbjct 660 CAAAGAGCCTTTAGTTACTATCGATAAGCCAATACTCCCTCCTGCACCAGTAGCCAATTC 719
Query 699 TACTACCACCTTTAAGCCGCCTAGAATTGTTGAGAGTAGGCAGAAACAGGAGTTTTCGTT 758
|| | ||||||||||||| ||||||||||||||||| || |||||||||||||||||||
Sbjct 720 TAGTTCCACCTTTAAGCCACCTAGAATTGTTGAGAGCGGGAAGAAACAGGAGTTTTCGTT 779
Query 759 TATAAGAGCGTTGAAGACAGTAGACAACAAGAGTGACCCTTGCGGAGGGAAGTACATTTA 818
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 780 TATAAGAGCCTTGAAGACAGTAGACAACAAGAGTGACCCTTGTGGAGGGAAGTACATTTA 839
Query 819 TGTTCATGATCTACCCTCCAAGTTCAATGAGGATATGCTTAGAGACTGTAAGAAGCTTAG 878
|||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 840 TGTTCACAATCTACCCTCAAAGTTCAATGAGGATATGCTTAGAGACTGTAAGAAGCTTAG 899
Query 879 TCTCTGGACTAACATGTGCAAGTTCACAACCAATGCTGGCCTTGGCCCGCCGCTTGAGAA 938
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 900 TCTCTGGACTAACATGTGTAAGTTCACAACCAATGCTGGCCTTGGGCCGCCGCTTGAGAA 959
Query 939 TGTTGAAGGTGTCTTCTCGGATGAAGGCTGGTACGCGACTAATCAGTTTGCTGTTGATGT 998
|||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||
Sbjct 960 TGTTGAAGGTGTCTTCTCTGATGAAGGTTGGTATGCGACTAATCAGTTTGCTGTTGATGT 1019
Query 999 GATATTCAGCAACCGGATGAAGCAGTACAAATGTTTGACGAATGATTCTTCTCTTGCTGC 1058
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 1020 GATATTCAGCAACCGGATGAAGCAGTACAAATGTTTGACAAATGATTCTTCCCTTGCTGC 1079
Query 1059 TGCCATCTTTGTGCCGTTTTATGCTGGATTCGACATTGCTAGGTACCTGTGGGGATACAA 1118
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 1080 TGCCATCTTTGTGCCGTTCTATGCTGGATTCGACATTGCTAGGTATCTGTGGGGATACAA 1139
Query 1119 TATCTCAAGAAGGGATGCTGCTTCGCTTGAGTTGGTTGATTGGCTCATGAAGCGGCCTGA 1178
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1140 TATCTCGAGAAGGGATGCTGCTTCGCTTGAGTTGGTCGATTGGCTCATGAAGCGGCCTGA 1199
Query 1179 GTGGGAAATAATGAGAGGAAAAGATCATTTCCTTGTGGCGGGTAGGATAACGTGGGATTT 1238
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 GTGGGATATAATGAGGGGAAAAGATCATTTCCTTGTGGCGGGTAGGATAACGTGGGATTT 1259
Query 1239 TAGGAGATTGTCTGAAGAAGAAACTGATTGGGGCAACAAGCTTCTCTTCTTACCAGCTGC 1298
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1260 TAGGAGATTGTCTGAAGAAGAAACTGATTGGGGCAACAAGCTTCTCTTCTTACCGGCTGC 1319
Query 1299 CAAGAACATGTCTATGCTTGTGGTTGAGTCGAGTCCATGGAACGCAAATGATTTTGGGAT 1358
||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||
Sbjct 1320 CAAGAACATGTCTATGCTTGTGGTTGAGTCGAGCCCATGGAATGCTAATGATTTTGGGAT 1379
Query 1359 CCCGTACCCAACCTACTTCCACCCAGCAAAGGACTCAGAGGTTTTTGAATGGCAAGACCG 1418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1380 CCCGTACCCAACCTACTTCCACCCAGCAAAGGACTCAGAGGTTTTTGAATGGCAAGACCG 1439
Query 1419 GATGAGAAACCTGGAAAGGAAATGGCTTTTCTCATTTGCAGGAGCCCCACGACCTGACAA 1478
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 1440 GATGAGAAACCTGGAAAGGAAGTGGCTTTTCTCGTTTGCAGGAGCCCCACGACCTGACAA 1499
Query 1479 TCCGAAATCCATCAGAGGGCAGATCATTGATCAATGCCGAAACTCAAATGTTGGCAAATT 1538
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1500 TCCGAAATCTATCAGAGGGCAGATCATTGATCAATGTCGAAACTCAAATGTTGGCAAATT 1559
Query 1539 ATTAGAATGCGATTTTGGGGAGAGCAAATGTCATGCACCAAGCAGCATTATGCAAATGTT 1598
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1560 ATTAGAATGCGATTTTGGGGAGAGCAAATGCCATGCACCAAGCAGCATTATGCAAATGTT 1619
Query 1599 TCAAAGCTCTCTCTTCTGCCTGCAGCCACAGGGAGACTCTTACACCCGAAGATCGGCATT 1658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1620 TCAAAGCTCTCTCTTCTGCCTGCAGCCACAGGGAGACTCTTACACCCGAAGATCGGCATT 1679
Query 1659 TGACTCAATGCTTGCCGGTTGTATACCGGTCTTCTTCCATCCAGGCTCAGCCTACACCCA 1718
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||
Sbjct 1680 TGACTCAATGCTTGCCGGTTGTATACCGGTCTTCTTCCATCCGGGTTCAGCCTACACGCA 1739
Query 1719 ATACACGTGGCATCTACCCAAGAACTACACAACCTACTCGGTATTCATCCCCGAGGATGA 1778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1740 ATACACGTGGCATCTACCCAAGAACTACACAACCTACTCGGTATTCATCCCCGAGGATGA 1799
Query 1779 TATTCGGAAGAGAAACATTAGCATTGAGGAGCGACTCCTTCAGATTCCACCCGAGCAGGT 1838
| |||||||||||||||| ||||| |||||||||||||| ||||||||| || |||||||
Sbjct 1800 TGTTCGGAAGAGAAACATAAGCATCGAGGAGCGACTCCTCCAGATTCCAGCCAAGCAGGT 1859
Query 1839 CAAGATAATGAGAGAGAATGTCATCAACCTCATCCCAAGGCTGATCTACGCAGACCCGAG 1898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1860 CAAGATAATGAGAGAGAATGTCATCAACCTCATCCCAAGGCTGATCTACGCAGACCCGAG 1919
Query 1899 ATCAGAACTGGAGACGCAGAAAGATGCATTTGATGTCTCGGTACAGGCTGTGATAGACAA 1958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1920 ATCAGAACTGGAGACGCAGAAAGATGCATTTGATGTCTCGGTACAGGCTGTGATAGACAA 1979
Query 1959 GGTGACTCGGTTAAGGAAGAACATGATCGAGGGACGAACCGAGTATGACAACTTCGTGGA 2018
||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct 1980 GGTGACTCGGTTAAGGAAGAACATGATCGAGGGCCGAACCGAGTATGACTACTTCGTGGA 2039
Query 2019 GGAGAACAGCTGGAAGTATGCGTTGCTGGAGGAAGGCCAACGGGAAGCTGGGGGCCATGT 2078
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2040 GGAGAACAGCTGGAAGTATGCGTTGCTGGAGGAAGGCCAACGGGAAGCAGGGGGCCATGT 2099
Query 2079 GTGGGACCCGTTCTTCTCCAAACCAAAGCCCGGAGAAGATGGCAGCAGCGATGGCAATGG 2138
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2100 GTGGGACCCGTTCTTCTCCAAACCAAAGCCCGGAGAAGATGGCAGCAGCGATGGTAATGG 2159
Query 2139 AGGCACGACAATTTCAGCAGATGCAGCTAAGAATTCATGGAAGAGTGAGCAGAGAGATAA 2198
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2160 AGGCACGACTATTTCAGCAGATGCAGCTAAGAATTCATGGAAGAGTGAGCAGAGAGATAA 2219
Query 2199 GACACAATGAAAAGAGACAGAAGCAGCCACATTTTGTTACGGTTTGGGATATAGATTTCG 2258
|||||| ||||||||||||||| | ||||||||||||||||||| | |||||| |||||
Sbjct 2220 GACACAGTGAAAAGAGACAGAA--A-CCACATTTTGTTACGGTTTTG-ATATAGTTTTCG 2275
Query 2259 GTTACAATT-ATACGGACAAAAAATGATGTATTTTTGTTGTATTGGTATCAAATGTAGTT 2317
||||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2276 GTTACTATTTATACGGACAAAAAATGATTTATTTTTGTTGTATTGGTATCAAATGTAGTT 2335
Query 2318 TCTCCAGTTTCATAGAGATAAGTTTGTTTGTATCAGGTACCCACAGAAATTAATAATAAG 2377
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2336 TCTCCAGTTTCATAGAGATAAGTTTGTTTGTATCAGTTACCCACAGAAATTAATAATAAG 2395
Query 2378 AAGTGACCCTTTTCAAGTTTC 2398
|||||||||||||||||||||
Sbjct 2396 AAGTGACCCTTTTCAAGTTTC 2416
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 119075692740
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5