BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480866
Length=821
Score E
Sequences producing significant alignments: (Bits) Value
AT2G20390.2 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 664 0.0
> AT2G20390.2 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; EXPRESSED IN: 22
plant structures; EXPRESSED DURING: 13 growth stages. | chr2:8796341-8798194
REVERSE LENGTH=846
Length=846
Score = 664 bits (359), Expect = 0.0
Identities = 401/421 (95%), Gaps = 3/421 (1%)
Strand=Plus/Plus
Query 23 CTCGCTGCTCCGGGTCAAATCAGCGAGTCGGGTCGAAAATTCACCTGAGAAAAATGTTCG 82
||||||||| |||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1 CTCGCTGCTTCGGGTCGAATCAGCGAGTCGGGTC-AAAATTCACCTGAGAAAAATGTTCG 59
Query 83 CGAGGCGGCTCTCGTCCTTCTTCAAAGGATCTTCAACCTCAAGGTACTCa-aaaaaaGTT 141
|||||||| || | || ||||||||||||||||||||||||| | | | |||| || |
Sbjct 60 CGAGGCGGTTCACTTCGTTCTTCAAAGGATCTTCAACCTCAA-GCCCGGACAAAACAGCT 118
Query 142 GGGACATTGGGCTCTTTTGGTCGCAAGGCAGTGTCTTTTGTCTTGATTACAGTCACTGGT 201
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 119 GGGACATTGGGCTCTTTTGGTCGCAAGGCAGTGTCTTTCGTCTTGATTACAGTCACTGGT 178
Query 202 GGTGTTGCTTTGAGTGCTCTCGATGATCTTTCTATCTATCGTGGGTGTAGCAGCAAGGCG 261
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 179 GGTGTTGCTTTGAGTGCTCTCGATGATCTTTCTATCTATCGTGGATGTAGCAGCAAGGCG 238
Query 262 ATGGAGAAGGTGATGAATAGTAAGGCGATGATTGAAGCCATTGGAGAGCCAATTGAGAAA 321
||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct 239 ATGGAGAAGGTGATGAATAGTAAGGTGATGATTGAAGCCATCGGAGAGCCAATTGAGAAA 298
Query 322 GGGCCATGGTACAATGCTTCACTAGCTGTTTCTCACCAAAGGCACTCAGTGTCTTGTTCA 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 GGGCCATGGTACAATGCTTCACTAGCTGTTTCTCACCAAAGGCACTCAGTGTCTTGTTCA 358
Query 382 TTCCCTGTGATTGGACCACAAGGCACCGGAATCTTGCATCTCAAAGCTGTTCGCAATGGA 441
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 359 TTCCCTGTGATTGGACCACAAGGCACAGGAATCTTGCATCTCAAAGCTGTTCGCAATGGA 418
Query 442 G 442
|
Sbjct 419 G 419
Score = 401 bits (217), Expect = 4e-111
Identities = 295/329 (90%), Gaps = 20/329 (6%)
Strand=Plus/Plus
Query 441 AGAAGATAGCATGTTCGGGTTTCTCAAGCAAAGGGACTGGGACATTCTGATAATGGACGC 500
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 526 AGAAGATAGCATGTTCGGGTTTCTCCAGCAAAGGGACTGGGACATTCTGATAATGGACGC 585
Query 501 ACTTGTCCATGTCCCGTCAAACGAGGGACCCCAACAAACCTTGAGAATCAACGTTTCTAA 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 586 ACTTGTCCATGTCCCGTCAAACGAGGGACCCCAACAAACCTTGAGAATCAACGTTACTGA 645
Query 561 CATCGTTGATCCTTCGCCTGGTACCGACGATAAACCTTCGGTACCACAagagccagagaa 620
||||||||||||||||||||||||| |||||||||||| || |||| ||||||||||||
Sbjct 646 CATCGTTGATCCTTCGCCTGGTACCCACGATAAACCTTTGGAACCATTAGAGCCAGAGAA 705
Query 621 gagctaaacagaga--gagaga-A---------CGCATCGTGGAGCTCCTGGCTATGGGT 668
|||||||| ||||| |||||| | ||| | |||||||||||||||| ||||
Sbjct 706 GAGCTAAAAAGAGAAAGAGAGAGAGAGAGAGAACGCTTGGTGGAGCTCCTGGCTA-GGGT 764
Query 669 TTTATTCCATTCCATTCCATTATATCTTGTGGAGCAACAGAGAGAATTGGGTCTTTTATT 728
|||||||||||||||| || || |||||||| ||| ||||||||||||||||||||||
Sbjct 765 TTTATTCCATTCCATT--AT-AT--CTTGTGGAACAAGAGAGAGAATTGGGTCTTTTATT 819
Query 729 TACTAATAATGAACACTTTCTTTTAGGAG 757
||||||||||||||| ||| ||| |||||
Sbjct 820 TACTAATAATGAACAATTT-TTT-AGGAG 846
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39986381012
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5