BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg480869

Length=165
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G63052.1 | Symbols:  | unknown protein; Has 30201 Blast hits...   226    5e-59


> AT3G63052.1 | Symbols:  | unknown protein; Has 30201 Blast hits 
to 17322 proteins in 780 species: Archae - 12; Bacteria - 
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses 
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr3:23298911-23299111 
REVERSE LENGTH=201
Length=201

 Score =  226 bits (122),  Expect = 5e-59
 Identities = 138/145 (95%), Gaps = 3/145 (2%)
 Strand=Plus/Plus

Query  1    CCGACCCAGGAAAGTCCCCGGGCCAC-TACCCGCAGAGATGCGGCCTCGGTAACGAGAGA  59
            |||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct  27   CCGACCCAGGAAAGTCCCCGGGCCACTTATCCGCAGAGATGCGGCCTCGGTAACGAGAGA  86

Query  60   ATCATGCGGTGGAGAGATCCTAAA-TGCTGAGACGCGTGTGTGGAGCTTCTGTGGTCTCT  118
            ||| |||||||||||||| | ||| |||||||||||||||||||||||| ||||||||||
Sbjct  87   ATCTTGCGGTGGAGAGATTC-AAATTGCTGAGACGCGTGTGTGGAGCTTATGTGGTCTCT  145

Query  119  CCGCCGATGATATCATGGCCGTTCG  143
            |||||||||||||||||||||||||
Sbjct  146  CCGCCGATGATATCATGGCCGTTCG  170



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 7142791842


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5