BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480870
Length=1661
Score E
Sequences producing significant alignments: (Bits) Value
AT2G20420.1 | Symbols: | ATP citrate lyase (ACL) family protei... 2625 0.0
> AT2G20420.1 | Symbols: | ATP citrate lyase (ACL) family protein
| chr2:8805453-8808120 FORWARD LENGTH=1649
Length=1649
Score = 2625 bits (1421), Expect = 0.0
Identities = 1591/1669 (95%), Gaps = 28/1669 (2%)
Strand=Plus/Plus
Query 1 TTCATTAAGTTAGG-AAAAATTAGGGTTAGACTCGATCATTCATAGCTGCGACTATTCTt 59
||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1 TTCATAAAG-TAGGAAAAAATTAGGGTTAGACTCGATCATTCATAGCTGCGACTATTC-T 58
Query 60 ctctctctctctA-TTTTTCCTTTATTCTTCTCTTTGGCTGCTTTTCGA--A--GACAAA 114
|| |||| |||| |||| | | ||| ||||||| |||| |||||||| | |||||
Sbjct 59 CT-GCTCTTTCTACATTTT-C-TCATT-TTCTCTTGGGCTACTTTTCGACTACTAACAAA 114
Query 115 TCAAACGATGAGGGGATTGGTGAACAAGCTCGTGTCCAGATCTCTCTCCATCTCCGGGAA 174
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 115 TCCAACGATGAGGGGATTGGTGAACAAGCTCGTGTCCAGATCTCTCTCCATCTCCGGGAA 174
Query 175 ATGGCAGCAGCAACAGCTTCGCCGTCTCAACATCCACGAGTATCAGGGAGCTGAATTGAT 234
||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 175 ATGGCAGAACCAACAGCTTCGTCGTCTCAACATCCACGAGTATCAGGGAGCTGAATTGAT 234
Query 235 GGGGAAATATGGAGTTAATGTGCCAAAAGGAGTAGCTGCTTCTTCATTGGAAGAAGTTAA 294
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 235 GGGGAAATATGGAGTTAATGTGCCGAAAGGAGTAGCTGCTTCTTCGTTGGAAGAAGTTAA 294
Query 295 AAAGGCTATTCAACAAGTTTTCCCTAATGAAAGCGAGTTGGTTGTTAAGAGCCAGATTTT 354
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 295 AAAGGCTATTCAAGATGTTTTCCCTAATGAAAGCGAGTTGGTTGTTAAGAGCCAGATTTT 354
Query 355 GGCTGGTGGAAGAGGTCTTGGAACATTCAAGAGTGGTCTTAAGGGTGGTGTTCACATTGT 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 355 GGCTGGTGGAAGAGGTCTTGGAACATTCAAGAGTGGTCTTAAGGGTGGTGTTCACATTGT 414
Query 415 TAAGCGTGATCAGGCTGAAGATATTGCTGGAAAGATGCTAGGGCAAGTACTTGTCACCAA 474
||| |||||| |||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 415 TAAACGTGATGAGGCTGAAGAGATTGCTGGAAAGATGCTAGGACAAGTACTTGTCACCAA 474
Query 475 GCAAACTGGTCCTCAAGGCAAAGTAGTTAGCAAGGTTTACTTGTGTGAGAAATTGTCACT 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 475 GCAAACTGGTCCTCAAGGCAAAGTAGTTAGCAAGGTTTACTTGTGTGAGAAATTGTCACT 534
Query 535 CGTCAATGAGATGTACTTTTCCATAATACTGGACCGTAAATCTGCTGGACCGTTGATCAT 594
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 535 CGTCAATGAGATGTACTTTTCCATTATTCTGGACCGTAAATCTGCTGGACCGTTGATCAT 594
Query 595 TGCCTGTAAAAAGGGTGGTACCAGCATTGAAGATCTTGCTGAGAAGTTCCCTGACATGAT 654
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 595 TGCCTGTAAAAAGGGTGGTACCAGTATTGAAGATCTTGCTGAGAAGTTCCCTGACATGAT 654
Query 655 CATCAAGGTACCAATTGATGTATTTGCAGGAATCACTGATGAAGATGCTGCTAAGGTTGT 714
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 655 CATCAAGGTACCAATTGATGTATTTGCAGGAATCACTGATGAAGATGCTGCTAAGGTTGT 714
Query 715 GGATGGCCTGGCTCCCAAAGCTGCTGACAGAAAAGATTCAATTGAACAAGTGAAGAAGCT 774
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 715 GGATGGTCTGGCTCCCAAAGCTGCTGACAGAAAAGATTCGATTGAACAAGTGAAGAAGCT 774
Query 775 ATATGAACTCTTCCGCAAGACTGACTGCACAATGTTGGAAATCAACCCCCTTGCAGAGAC 834
||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 775 ATACGAACTCTTCCGCAAGACTGACTGCACAATGTTGGAAATCAATCCCCTTGCGGAGAC 834
Query 835 ATCCACTAATCAATTGGTAGCTGCTGATGCCAAATTGAACTTCGATGATAATGCTGCGTT 894
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 835 ATCAACTAATCAATTGGTAGCTGCTGATGCCAAATTGAACTTCGATGATAATGCTGCGTT 894
Query 895 CCGACAAAAAGAGGTTTTCGCCATGCGTGATCCAACACAGGAGGATCCACGAGAGGTGGC 954
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 895 CCGACAAAAAGAGGTTTTCGCCATGCGTGATCCAACACAGGAGGATCCACGAGAGGTGGC 954
Query 955 TGCTGCGAAAGTTGACCTGAACTATATTGGTTTAGATGGAGAGATTGGTTGCATGGTGAA 1014
|||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 955 TGCTGCTAAAGTTGACCTGAACTACATCGGTTTAGATGGAGAGATTGGTTGCATGGTGAA 1014
Query 1015 TGGTGCTGGATTGGCCATGGCAACCATGGATATCATTAAATTACATGGTGGAACTCCCGC 1074
|||||||||||||||||||||||||||||| |||||||||||||| |||||||| |||||
Sbjct 1015 TGGTGCTGGATTGGCCATGGCAACCATGGACATCATTAAATTACACGGTGGAACACCCGC 1074
Query 1075 CAATTTCCTTGACGTTGGTGGAAATGCTTCTGAGCACCAGGTGGTGGAAGCGTTTAAGAT 1134
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1075 CAATTTCCTTGACGTTGGTGGAAATGCTTCTGAGCACCAGGTGGTGGAAGCGTTTAAGAT 1134
Query 1135 TCTGACATCTGACGATAAAGTGAAAGCAATCTTGGTGAACATATTTGGTGGGATAATGAA 1194
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1135 ACTGACATCGGACGATAAAGTGAAAGCAATCTTGGTGAACATATTTGGTGGGATAATGAA 1194
Query 1195 ATGTGATGTGATTGCTAGTGGAATCGTGAACGCTGCAAAAGAGGTCTCATTGAAAGTGCC 1254
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1195 ATGTGATGTGATTGCTAGTGGAATCGTGAACGCTGCAAAAGAGGTCGCATTGAAAGTGCC 1254
Query 1255 AGTGGTGGTTCGTTTAGAAGGAACAAATGTTGAGCAGGGAAAGAGAATCCTCAAGGAAAG 1314
||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1255 AGTGGTGGTTCGTCTAGAAGGAACGAATGTTGAGCAGGGAAAGAGAATCCTCAAGGAAAG 1314
Query 1315 TGGAATGAAACTCATAACGGCTGATGATTTGGATGATGCAGCTGAGAAAGCGGTTAAAGC 1374
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1315 TGGAATGAAACTCATAACAGCTGATGATTTGGATGATGCAGCTGAGAAAGCGGTTAAAGC 1374
Query 1375 ATTAGCTAACTAATCTCTCTCTATATACCAAAAGCCGGTTTGTTAATTGTTTTGTGGTTG 1434
|||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1375 TTTAGCTCACTAATCTCTCTATATATACCAAAAGCCGGTTTGTTAATTGTTTTGTGGTTG 1434
Query 1435 ACAGCGCGCAATTTACACTTTCTTGCGGAAATCATTTCCTCAAACAGATCAATAATGAAC 1494
|| || | ||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1435 AC-GC-C-CAATTTACACTTTCTTGCGGATATCATTTCCTCAAACAGATCAATAATGAAC 1491
Query 1495 TGGTCTCCTTTTTT-GTGTGATCCATCCAATGAGATTTAAATCAGAATTCTCAATATCTT 1553
|||||||||||||| ||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct 1492 TGGTCTCCTTTTTTTGTGTGATCCATCCAAAGAGATTCAAATCAGAATTCTCAATATCTT 1551
Query 1554 TTCTTGTATTTAACCAACTCATATGGTTGATACTTGATACTAAGGGGTTCAAGCTTT-TC 1612
|| | ||||||||||||||||||||||||||||| | ||| |||||| ||| ||
Sbjct 1552 TT-T-GTATTTAACCAACTCATATGGTTGATACT--A------GGGTTTCAAG-TTTATC 1600
Query 1613 TCATACGTACTGTACCTATCATGAATAAAAATCGATTTTGTGGGAAGCC 1661
||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 1601 TCATACGTACTGTTCCTATCATGAATAAAAATCGTTTTTGTGGGAAGCC 1649
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82077891075
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5