BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg480876

Length=419
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G20490.1 | Symbols: NOP10, EDA27 | nucleolar RNA-binding Nop...   508    1e-143


> AT2G20490.1 | Symbols: NOP10, EDA27 | nucleolar RNA-binding Nop10p 
family protein | chr2:8831722-8832916 FORWARD LENGTH=476
Length=476

 Score =  508 bits (275),  Expect = 1e-143
 Identities = 394/446 (88%), Gaps = 29/446 (7%)
 Strand=Plus/Plus

Query  1    CTGCTTCTTCTGCTCCAGAAAAACCCTAATCAGCTTCTCGTCTCCAAAAAATTCAAAACC  60
            ||||| ||||||||||||||||||||||||||||||||||||||| | ||||||| ||||
Sbjct  1    CTGCTACTTCTGCTCCAGAAAAACCCTAATCAGCTTCTCGTCTCC-ATAAATTCAGAACC  59

Query  61   AAGAAACATCTCTGAGGGACTCAACGAAGATGTATCTTCAGTGCTATATCAACGAGAAGG  120
            |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct  60   AAGAAACATCTCTGAGAGACTAAACGAAGATGTATCTTCAGTGCTATATCAACGAGAAGG  119

Query  121  GTGACAAGGTTTACACCACTAAGAAGGAATCACCGCAAGGTCTAGCCACTGAATCTGCAC  180
            |||| ||||||||||| ||||||||||||||||||| ||| ||||||||||||||||| |
Sbjct  120  GTGAGAAGGTTTACACAACTAAGAAGGAATCACCGCTAGGGCTAGCCACTGAATCTGCCC  179

Query  181  ATCCAGCCCGGTTCTCCCCTGATGATAAATACTCAAAGCAGAGAGTATTGTTGAAGAAGC  240
            |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct  180  ATCCAGCCCGGTTCTCCCCTGACGATAAATACTCAAAGCAGAGAGTATTGTTGAAGAAGC  239

Query  241  GATTTGGTCTCTTACCGACCCAGAACGCACCTGTCAAGTACTGATGAA------------  288
            |||||||||||||||||||||| ||||||||| || ||||||||||||            
Sbjct  240  GATTTGGTCTCTTACCGACCCAAAACGCACCTCTCCAGTACTGATGAAGAAGCAAACCAC  299

Query  289  TT---T-TGAT--TTTCT--T-TT--TT---AATTTGCTATGTTGTCTCTTAATGAAATG  334
            ||   | || |  ||| |  | ||  ||   |||||||||||||||||||||||||||||
Sbjct  300  TTGCCTGTGTTGGTTTTTGATGTTCCTTTTTAATTTGCTATGTTGTCTCTTAATGAAATG  359

Query  335  TCAACGTAAACCTTCTTTGTAATGTCTTCAAATAGTATGAGTTAAGAGCAATTTTTACCT  394
            |  || | |||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct  360  TTGACTTGAACCGTCTTTGTAATGTCTTCAAATAGTGTGAGTTAAGAGCAATTTTTACCT  419

Query  395  ATAC-TCGTCAAGCCTGACACTTAAA  419
            || | |||||||||||| ||||||||
Sbjct  420  AT-CGTCGTCAAGCCTGCCACTTAAA  444



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19855760855


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5