BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480877
Length=902
Score E
Sequences producing significant alignments: (Bits) Value
AT2G20495.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Serine-th... 1264 0.0
> AT2G20495.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Serine-threonine
protein kinase 19 (InterPro:IPR018865); Has 155 Blast
hits to 154 proteins in 53 species: Archae - 0; Bacteria
- 0; Metazoa - 95; Fungi - 5; Plants - 34; Viruses - 0; Other
Eukaryotes - 21 (source: NCBI BLink). | chr2:8833165-8835263
FORWARD LENGTH=1093
Length=1093
Score = 1264 bits (684), Expect = 0.0
Identities = 849/924 (92%), Gaps = 29/924 (3%)
Strand=Plus/Plus
Query 1 aaagaaaaaaaaaatgaagaaaagaaaaaaTCCGGAATCGTCCGCCTCTAAAGCAAAGAA 60
||||||||| |||||||||||||||| |||||||||||||||| ||||| ||||||||||
Sbjct 3 AAAGAAAAACAAAATGAAGAAAAGAACAAATCCGGAATCGTCCACCTCTGAAGCAAAGAA 62
Query 61 ACGCCGGCGAGAGGAAGAAGATGAAGA-AGAAGTGGGTTGTAGTCACACTGCAA-T---- 114
|||||||||||| | |||||||| || | |||| |||||||||||| |||||| |
Sbjct 63 ACGCCGGCGAGA-G--GAAGATGACGATA-AAGTTGGTTGTAGTCACTCTGCAATTGAAG 118
Query 115 -T------G-A----A-GATCAATGTCTTCCTCTGGAGGATGATCTCACCTTTAGCGACA 161
| | | | ||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 119 ATGGAGCAGTATCTGAGGATCAATGTCTTCCTCTTGAGGATGATCTCACCTTTAGCGATA 178
Query 162 CTTCTG-TGGCATTACGAATGATGAGAGCTCAGTTTCCTCGTATTGATCAGGCTTCGATC 220
|||||| || | || ||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 179 CTTCTGTTGCCCTT-CGAATGATGCGAGCTCAGTTTCCTCGTATTGACCAGGCTTCGATC 237
Query 221 CCACCCTTCATATTACAGTCGCAGTTATACAGTAGCGTCAATGATAGAACCCAAGTCGAT 280
||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||
Sbjct 238 CCACCCTTCATATTACAGTCGCAATTGTACAGTAGTGTCAATGATAGAACCCAAGTCGAT 297
Query 281 AGAGAATTAGAGTGTTTAAGAAGGGAGAAAGTTGTTCGTGTTTTCAAACTCAACACTGGA 340
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 298 AGAGAATTAGAGTGTTTACGAAGGGAGAAAGTTGTTCGTGTTTTCAAACTCAACACTGGA 357
Query 341 CAAGATGATCATGCAATTATCTTTTTGGATGACTATCTTAACCAGGTAGATCGAATAGTG 400
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 CAAGATGATCATGCCATCATCTTTTTGGATGACTATCTTAACCAGGTAGATCGAATAGTG 417
Query 401 AAGAGGATGGAAGAGAAGAGACAGAGTGATCTTGAAGTTTTTAAGTGGTTCAAAGGGCAT 460
||||||||||||||||||| |||||||||||||||| |||| |||| ||||||| ||||
Sbjct 418 AAGAGGATGGAAGAGAAGAAACAGAGTGATCTTGAAATTTTCAAGTTGTTCAAAATGCAT 477
Query 461 GTCCTTGATTCAAAACTTGAACCCAGTATTGGACATCATGAGCTATTTTCGCTGTTGTCA 520
||||||||||||||||||||||| ||||| || |||||||||||| ||||||||||||||
Sbjct 478 GTCCTTGATTCAAAACTTGAACCTAGTATCGGGCATCATGAGCTACTTTCGCTGTTGTCA 537
Query 521 TTGGGCGGAAAGGTGAAAGATGCACACATCACTCTCTTAATTAACGCAGGCCTTCTCACA 580
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 538 TTGGGAGGAAAGGTGAAAGATGCACACATCACTCTCTTAATAAACGCAGGCCTTCTCACA 597
Query 581 CGCCAACTTATCGATCCAGACATGTACTGGTTTGCAATTCCAAGTATCGGTAAACTGTGG 640
||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||
Sbjct 598 CGCCAACTTATCGATCCAGACATGTACTGGTTTGCAATTCCGAGTACCGGTAAATTGTGG 657
Query 641 AAGGGTCTATTGCAGGGAAGGAACGAACTCCTCTCATTGTTAAAGCGCAAGCGACATAAA 700
|||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 658 AAGGGTCTATCGCAGGGAAGGAACGAACTCCTCTCATTGATAAAGCGCAAGCGACATAAA 717
Query 701 GAGATGTTCTTGGCAGAGCTTGAAAAGAAACGGCTCCGGTTCTCTCCTCTGGATGTGAGA 760
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 GAGATGTTCTTGGCTGAGCTTGAAAAGAAACGGCTCCGGTTCTCTCCTCTGGATGTGAGA 777
Query 761 TTTCACATACGTGATCTCATTGGCTCCGGTCACCTGAAAACTGTTCAGACAACTTCTGGG 820
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 TTTCACGTACGTGATCTCATTGGCTCCGGTCACCTGAAAACTGTTCAGACAACTTCTGGA 837
Query 821 CTGATCGTTCGGATTTCAAAGGACTAAAATGCCAG-TGCGGGTTTCTCATCAAATGGGCA 879
|||||||||||||||| ||||||||||||||| || ||| |||||||||||||| ||| |
Sbjct 838 CTGATCGTTCGGATTTTAAAGGACTAAAATGC-AGGTGCAGGTTTCTCATCAAACGGGTA 896
Query 880 ATTTAATTAT-CAGGTGACCTTTT 902
|||| || || || | ||||||||
Sbjct 897 ATTTCAT-ATTCAAGAGACCTTTT 919
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44055346919
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5