BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480879
Length=1434
Score E
Sequences producing significant alignments: (Bits) Value
AT2G20510.1 | Symbols: ATTIM44-1, TIM44-1 | translocase inner m... 2152 0.0
AT2G36070.1 | Symbols: ATTIM44-2, TIM44-2 | translocase inner m... 1513 0.0
> AT2G20510.1 | Symbols: ATTIM44-1, TIM44-1 | translocase inner
membrane subunit 44-1 | chr2:8836018-8838598 REVERSE LENGTH=1419
Length=1419
Score = 2152 bits (1165), Expect = 0.0
Identities = 1351/1438 (94%), Gaps = 23/1438 (2%)
Strand=Plus/Plus
Query 1 ATGGCGACTAGAAAGATAATTCGAGATTTACTGATCACAAAGCAGCCTCTTTTACGTCAA 60
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCGATTAGAAAGATAATTCGAGATTTACTGATCACAAAGCAGCCTCTTTTACGTCAA 60
Query 61 CTATTCCACCAACGAGTTCTGAGAGGAAACGCAAGATCAGAGTTTCTTCCCGCTATTGGG 120
||||||||||||||| |||| |||||||||||||||||||||||| |||||||||
Sbjct 61 CTATTCCACCAACGA------AGAGCAAACGCAAGATCAGAGTTTCTTCCTGCTATTGGG 114
Query 121 TATTCGAGTCATCGCCGGTTCAGTGTTTTCAGCGAGTTCTCGAAGAATATTAGAGGAGAA 180
||| ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 115 TATACGAGTCATCGCCGGTTCAGCGTTTTCACCGAGTTCTCGAAGAATATTAGAGGAGAA 174
Query 181 GCTGATAGCAATCCTGAATTTCAAAGAACAGTGAAGGAGTTTAAGGAAAGAGCAGAAGAG 240
||| ||||||||||||||||| |||||||||| |||||| | ||||||||| ||||||||
Sbjct 175 GCTCATAGCAATCCTGAATTTGAAAGAACAGTAAAGGAGCTCAAGGAAAGAACAGAAGAG 234
Query 241 TTTAAAGGTGTAAAAGAGGACCTGAAAGTTAGAACGAAACAAACGACTGATCAGCTGTAC 300
||||||||||||| ||||||||||||||| |||||||||||||||||||| |||| |||
Sbjct 235 TTTAAAGGTGTAACAGAGGACCTGAAAGTGAGAACGAAACAAACGACTGAAAAGCTTTAC 294
Query 301 AAGCAAGTTGATGGTGTGTGGACTGAGGCTGAATCTGC-GCCGAAAAAGGTCTCTTCTAG 359
||||||| |||||||||||||||||||||||||||||| ||| |||||||||||||| ||
Sbjct 295 AAGCAAGCTGATGGTGTGTGGACTGAGGCTGAATCTGCGGCC-AAAAAGGTCTCTTCAAG 353
Query 360 TGTGAAAGACAAGCTCTCAGCAGCCACTGAAGAGGTCAAGGAGTCATTCAAGCTCGGGAA 419
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 354 TGTGAAAGACAAGCTCTCAGCAGCCAGTGAAGAGGTCAAGGAGTCATTCAAGCTCGGGAA 413
Query 420 GGAGGAGAGTGCAGAGTCAGCAAGTTCATCAGGCACAAGAACCTCTCAAGGAGAAAAACA 479
|||||||| |||||||||||| |||||||||||||||||| |||||||||||| || |
Sbjct 414 GGAGGAGAATGCAGAGTCAGCGAGTTCATCAGGCACAAGAGCCTCTCAAGGAG---AA-A 469
Query 480 GCAGCATCAGCAATCAGGTTCTACGGAGGAACTACATACATTTTTTGCAAAATTCAAGTC 539
| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 470 --A--A-CAGCAATCAGGTTCTACGGAGGAACTACATACATTTTTTGCAAAATTCAAGTC 524
Query 540 AAGTCTTTCTTCGCCAAAGGTATCCGAGGCGTTTTACAAGCTGAAGGAAGCCAAACCCTT 599
|||||||||||| |||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 525 AAGTCTTTCTTCACCAAAGGTATCCGAGGTGTTTTACAGGCTGAAGGAAGCCAAACCCTT 584
Query 600 TGACATAGTAAAG-AAGGCACTTGACATTGTGAAAGATGAGTTGCGTGGAAACCCATCAA 658
||| ||||||||| || ||||||||||||||||| |||||||| ||||| |||||||| |
Sbjct 585 TGATATAGTAAAGCAA-GCACTTGACATTGTGAAGGATGAGTTACGTGGGAACCCATCTA 643
Query 659 GAAAGAAGTTCCTGGAATATACACCTCCCCCGCCATTCACAGGTGAGAGAAGTATGAGAA 718
|||| |||||||||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct 644 GAAAAAAGTTCCTGGAACATACACCTCCCCCGCCATTCACCGGTGAGAGAAGTATGAGAA 703
Query 719 CGGAGATGGTTGTTACGCCAACAAAACAGTCTAAGTGGCAACAAAAGTGGGAATCCTTTA 778
| |||||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 704 CAGAGATGGTGGTTACGCAAACAAAACAGTCTAAGTTGCAACAAAAGTGGGAATCCTTTA 763
Query 779 AAGAAAAGATGCAAGGCTCTCCTGTATTCAAACGTCTAAGCAGG-ATGAGTGAGCCTGTT 837
||||||||||||||| ||||||||||| |||||||||||| || |||||||||||||||
Sbjct 764 GAGAAAAGATGCAAGGTTCTCCTGTATTTAAACGTCTAAGC-GGAATGAGTGAGCCTGTT 822
Query 838 GTCAACAAGAGCCAAGAGATTGCAGAAGATGTGAGGGAAATATGGGAAACCAGTGATAAT 897
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 823 GTCAACAAGAGCCAAGAGATTGCAGAAGATGTGAGGGAAATATGGGAAACCAGTGATAAT 882
Query 898 CCGATTGTTCACAAGATTCAGGATATGAATGAGATGTTCTTGAAGGAAACAGATTCTGCA 957
|| |||||||||||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct 883 CCAATTGTTCACAAGATTCAGGACATGAATGAGAAGTTCTTGAAGGAAACAGATTCTGCA 942
Query 958 TCAACTTACAAAGAGATACGCAACCGAGATCCATCGTTCTCCTTGCCAGACTTTGCTGCA 1017
|||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 943 TCAACTTACAAAGAGATACGCAGCCGAGACCCATCGTTCTCCTTGCCAGACTTTGCTGCA 1002
Query 1018 GAAATTGAGGAAGTCATCAGACCAGTCTTGAATGCATACAGTGAGGGAGATGTTGAGACC 1077
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1003 GAAATTGAGGAAGTCATCAAACCAGTCTTGAATGCATACAGTGAGGGAGATGTTGAGACC 1062
Query 1078 TTGAAGAAGTATTGCAGCAAGGAAGTGATTGAACGGTGCACCGCAGAACTCACAGCTTAC 1137
||||||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||
Sbjct 1063 TTGAAGAAGTATTGCAGCAAGGAAGTGATTGAACGGTGCACGGCAGAGCGCACAGCTTAC 1122
Query 1138 CAAACTCATGGTTTCTTTTTCGATAACAAGCTTCTGCATATATCTGACGT-TCGAGTTTC 1196
|||||||||||| || ||||||||||||||||||||||||||||||| || || ||||||
Sbjct 1123 CAAACTCATGGTGTCCTTTTCGATAACAAGCTTCTGCATATATCTGAAGTCTC-AGTTTC 1181
Query 1197 AGTGACAAAGATGATGGGAGATTCCCCAATAATCATCGCCAAGTTCCAAACGCAAGAAAT 1256
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1182 TGTGACAAAGATGATGGGAGATTCCCCAATAATCATCGCTAAGTTCCAAACGCAAGAAAT 1241
Query 1257 CTACTGCGTGCGCGACGAGAATGGAGAAATCCAAGAAGGAGGCCAGGACACGATACACAC 1316
||||||||| || |||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 1242 CTACTGCGTTCGTGACGAGAATGGAGAAATCCAAGAAGGTGGGCAGGACACGATACACAC 1301
Query 1317 GGTGTACCACGAATGGGCAATGCAACAAGTGGAGGCAACAGAGTTTGGGGAAGATGCTAT 1376
||||||||| |||||||||||||||||||||||| ||||||| || ||||||||||||||
Sbjct 1302 GGTGTACCATGAATGGGCAATGCAACAAGTGGAGACAACAGAATTAGGGGAAGATGCTAT 1361
Query 1377 TTATCCCATTTGGAGGCTCAGAGAGATGCGTAGAAATGGTGTTCAAGCTCTCATTTAA 1434
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1362 TTATCCCATTTGGAGGCTCAGAGAGATGTGTAGAAATGGTGTTCAAGCTCTCATTTAA 1419
> AT2G36070.1 | Symbols: ATTIM44-2, TIM44-2 | translocase inner
membrane subunit 44-2 | chr2:15144836-15148131 REVERSE LENGTH=1929
Length=1929
Score = 1513 bits (819), Expect = 0.0
Identities = 1252/1453 (86%), Gaps = 62/1453 (4%)
Strand=Plus/Plus
Query 1 ATGGCGACTAGAAAGATAATTCGAGATTTACTGATCACAAAGCAGCCTCTTTTAC-GTCA 59
||||||| ||||||| | |||||||||||||||||||||||||||||||| | | | ||
Sbjct 237 ATGGCGAGTAGAAAGCTGGTTCGAGATTTACTGATCACAAAGCAGCCTCTTCTCCAG-CA 295
Query 60 ACTATTCCACCAACGAGTTCTGAGAGGAAACGCAAGATC-AGAGT-TTCTTCCCGCTATT 117
| | | |||||||| | ||| || ||||||| | || || |||||| | | |
Sbjct 296 ATTGGTGCACCAACG-G---AGAGTGG--GCGCAAGA-CTAG-GTCTTCTTCAGGGAAAT 347
Query 118 GGGTATT-CGAGTCATCGCCGGTTCAGTGTTTTCAGCGAGTTCTCGAAGAATATTAGAGG 176
|||| || |||||||||| ||||| ||||||||||| |||||||||||||| ||||||||
Sbjct 348 GGGT-TTGCGAGTCATCGACGGTTTAGTGTTTTCAGTGAGTTCTCGAAGAAGATTAGAGG 406
Query 177 AGAAGCTGATAGCAATCCTGAATTTC-AAAGAACAGTGAAGGAGTTTAAGGAAAGAGCAG 235
|||||||||||||||||||||||||| |||| |||||||||||||| |||||||||||||
Sbjct 407 AGAAGCTGATAGCAATCCTGAATTTCAAAAG-ACAGTGAAGGAGTTCAAGGAAAGAGCAG 465
Query 236 AAGAGTTTAAAGGTGTAAAAGAGGACCTGAAAGTTAGAACGAAACAAACGACTGATCAGC 295
| ||||| ||||||| ||||||||| |||||||||||||||||||||| ||||| ||
Sbjct 466 AGGAGTTGCAAGGTGTTAAAGAGGACTTGAAAGTTAGAACGAAACAAACTACTGAGAAGT 525
Query 296 TGTACAAGCAAGTTGATGGTGTGTGGACTGAGGCTGAATCTG-CGCCGAAAAAGGTCTCT 354
|||| || |||| | | || || ||||| ||||||||||||| ||| ||||||||||||
Sbjct 526 TGTATAAACAAGGTCAAGGCGTCTGGACGGAGGCTGAATCTGTGGCC-AAAAAGGTCTCT 584
Query 355 TCTAGTGTGAAAGACAAGCTCTCAGCAGCCACTGAAGAGGTCAAGGAGTCATTCAAGCTC 414
|| ||||||||||||||| |||||||||| || |||||||||||||||||||||||||||
Sbjct 585 TCAAGTGTGAAAGACAAGTTCTCAGCAGCTACAGAAGAGGTCAAGGAGTCATTCAAGCTC 644
Query 415 GGGAAGGAGGAGAGTGCAGAGTCAGCAAGTTCATCAGGCACAAGAACCTCTCAAGGAGAA 474
|| ||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||
Sbjct 645 GGTAAGGAGGAGAGTGCAGAGTCAGCAAGTTCATCAGGCACAGGAACCACTGAAGGAGAA 704
Query 475 AAACAGCAGCATCAGCAATCAGGTTCTACGGAGGAACTACATACATTTTTTGCAAAATTC 534
||||||||| |||||||| |||||||||||||| | | |||||||||||| |||||||
Sbjct 705 AAACAGCAG---CAGCAATCTGGTTCTACGGAGGAGCAAGATACATTTTTTGGAAAATTC 761
Query 535 AAGTCAAGTC-TTTCTTCGCCAAAGGTATCCGAGGCGTTTTACAAGCTGAAGGAAGCCAA 593
||||| || | ||||||| ||||| |||| |||||| ||| | | | ||| |
Sbjct 762 AAGTCCAG-CATTTCTTCACCAAAACTATCTGAGGCG-TTT-C-A-C------AAG-C-- 807
Query 594 ACCCTTTGACATAGTAAAGAAGGCACTTGACATTGTGAAA-GATGAGTTGCGTGGAAACC 652
| | ||||| | | |||||||| |||||||||||| ||| ||||| |||||||||||||
Sbjct 808 -CTC-TTGACTTTGCAAAGAAGGGACTTGACATTGT-AAAGGATGAATTGCGTGGAAACC 864
Query 653 CATC-AAGAAAGAAGTTCCTGGAATATACACCTCCCCCGCCATTCACAGGTGAGAGAAGT 711
|||| || || |||| |||||| ||||||||||| |||||||| |||||||||||||||
Sbjct 865 CATCTAA-AAGGAAGCACCTGGAGTATACACCTCCGCCGCCATTTACAGGTGAGAGAAGT 923
Query 712 ATGAGAACGGAGATGGTTGTTACGCCAACAAAACAGTCTAAGTGGCAACAAAAGTGGGAA 771
| ||||||||||||||| ||| ||||||||||||||||||||||||| |||| ||||||
Sbjct 924 ACGAGAACGGAGATGGTAATTATGCCAACAAAACAGTCTAAGTGGCAAAAAAAATGGGAA 983
Query 772 TCCTTTAA-AGAAAAGATGCAAGGCTCTCCTGTATTCAAACGTCTAAGCAGGATGAGTGA 830
||| |||| ||||||||||||||||| ||||||||| |||||||||||| ||||||||||
Sbjct 984 TCC-TTAAGAGAAAAGATGCAAGGCTATCCTGTATTTAAACGTCTAAGCGGGATGAGTGA 1042
Query 831 GCCTGTTGTCAACAAGAGCCAAGAGATTGCAGAAGATGTGAGGGAAATA-TGGGAAACCA 889
||| ||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 1043 GCCAGTTGTCAACAAGAGCCAAGAGATTGCAGAAGATGTGAGGGAAA-AGTGGGAAACCA 1101
Query 890 GTGATAATCCGATTGTTCACAAGATTCAGGATATGAATGAGATGTTCTT-GAAGGAAACA 948
||||||||||||||||||||||||||||||| |||||||||| | |||| || |||||||
Sbjct 1102 GTGATAATCCGATTGTTCACAAGATTCAGGACATGAATGAGAGGATCTTTGA-GGAAACA 1160
Query 949 GATTCTGCATCAACTTACAAAGAGATACGCAACCGAGATCCATCGTTCTCCTTGCCAGAC 1008
| ||||||||| |||||||| ||||| ||| |||||||||||| ||||||||||| |||
Sbjct 1161 GGTTCTGCATCGACTTACAAGGAGATCCGCCGCCGAGATCCATCATTCTCCTTGCCGGAC 1220
Query 1009 TTTGCTGCAGAAATTGAGGAAGTCATCAGACCAGTCTTGAATGCATACAGTGAGGGAGAT 1068
|||| | |||||||| |||||| ||||||||| |||||||||||||| ||| ||||||||
Sbjct 1221 TTTGTTTCAGAAATTCAGGAAGCCATCAGACCGGTCTTGAATGCATATAGTAAGGGAGAT 1280
Query 1069 GTTGAGACCTTGAAGAAGTATTGCAGCAAGGAAGTGATTGAACGGTGCACCGCAGAACTC 1128
| | ||||||||||||||||||||||||||||| ||||||||||||| || ||||| | |
Sbjct 1281 GCTAAGACCTTGAAGAAGTATTGCAGCAAGGAATTGATTGAACGGTGTACGGCAGAGCAC 1340
Query 1129 ACAGCTTAC-CAAACTCATGGTT-TCTTTTTCGATAACAAGCTTCTGCATATATCTGACG 1186
| ||||| | | | ||| |||| | ||||||||| |||||||||||||| ||||||| |
Sbjct 1341 AGAGCTTTCACGAG-TCAAGGTTAT-TTTTTCGATCACAAGCTTCTGCATGTATCTGAAG 1398
Query 1187 TTCGAGT-TTCA-GTGACAAAGATGATGGGAGATTCC-CCAATAATCATCGCCAAGTTCC 1243
|| || | |||| | |||||||||||||||| | | | ||| ||||||||| || |||||
Sbjct 1399 TT-GA-TATTCAAGAGACAAAGATGATGGGA-ACTACTCCAGTAATCATCGTCAGGTTCC 1455
Query 1244 AAACGCAAGAAATCTACTGCGTGCGCGA-CGAGAATGGAGAAATCCAAGAAGGAGGCCAG 1302
||||||||||||||| |||||| || || | || ||||| ||||| ||||||||||||||
Sbjct 1456 AAACGCAAGAAATCTTCTGCGTCCGTGATC-AGGATGGAAAAATCAAAGAAGGAGGCCAG 1514
Query 1303 GACACGATACACACGGTGTACCACGAATGGGCAATGCAACAAGTGGAGGCAACAGAGTTT 1362
||||| |||||||| |||||| |||| ||||| |||||||||||||| ||| |||||||
Sbjct 1515 GACACAATACACACAGTGTACTACGACTGGGCTATGCAACAAGTGGATGCAGCAGAGTTA 1574
Query 1363 GGGGAAGATGCTATTTATCCCATTTGGAGGCTCAGAGAGATGC-GTAGAAATGGTGTTCA 1421
||||||||||| |||||||||||||||||||||||||||||| | ||| ||||||||
Sbjct 1575 GGGGAAGATGCGATTTATCCCATTTGGAGGCTCAGAGAGATGTTG-AGAGCGGGTGTTCA 1633
Query 1422 AGCTCTCATTTAA 1434
|||||||||||||
Sbjct 1634 AGCTCTCATTTAA 1646
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70682367360
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5