BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480880
Length=732
Score E
Sequences producing significant alignments: (Bits) Value
AT2G20515.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 948 0.0
> AT2G20515.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; EXPRESSED IN: 16 plant
structures; EXPRESSED DURING: 7 growth stages; Has 71 Blast
hits to 71 proteins in 14 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr2:8838854-8839700 REVERSE
LENGTH=760
Length=760
Score = 948 bits (513), Expect = 0.0
Identities = 684/760 (90%), Gaps = 38/760 (5%)
Strand=Plus/Plus
Query 1 GAGGAGACCGATAACTCAAGCAAACTCAGATTCTTGAGAGCGATTTAACGAAGACCCAAG 60
||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct 2 GAGGAGACCGATAACTCAAGCAAACTCAGATTCTTGATAGCGATTTAATGAAGACCCAAG 61
Query 61 AGTACCAAGACAAAGGGCTG----ATTAATGCT-TTTT-----TAGGGATCTCATGGACT 110
||| ||||||| |||||||| ||||||||| |||| || | || ||||||||
Sbjct 62 AGTCCCAAGACCAAGGGCTGATTAATTAATGCTGTTTTAACCATATGCATATCATGGACA 121
Query 111 CACTTTGTTCTCCGAGTCGAATCGTTCTAGTCACTTTCTTCCTCCTCTGCTTCTTCGCCG 170
|||||||||||||||||||| ||||||| ||||| |||||||||||||||||||| ||||
Sbjct 122 CACTTTGTTCTCCGAGTCGACTCGTTCTGGTCACCTTCTTCCTCCTCTGCTTCTTTGCCG 181
Query 171 GAGCTTTATCGGCGACAAGACCTGGTTTCGTCTACACCAGACACAGAGGACGATGCACGC 230
||| || ||||||||| || ||||||||| ||||||||||||||||||||||||||||||
Sbjct 182 GAGATTCATCGGCGACGAGGCCTGGTTTCATCTACACCAGACACAGAGGACGATGCACGC 241
Query 231 CGCAGTATTGGAGCAGTCAGAGGGAAGCATGGCCGAGGATGGTACCGGAGAGATCAACGG 290
|||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 242 CGCAGTATTGGAGCAGCCAGAGGGAAGCATGGCCGAGGATGGTACCTGAGAGATCAACCG 301
Query 291 TAGAGAAGATATTCGGAGTGATGGTAGCAAAAGAACGGTGGAGATCTGATCTAACGCTAG 350
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 302 TGGAGAAAATATTCGGAGTGATGGTAGCAAAAGAACGGTGGAGATCTGATCTAACGCTAG 361
Query 351 TGGAATCAACGGCTAGGAATGACGAAGAAGGGAACGCGTACGGTGCGTTGCTGAAACAGG 410
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 362 TGGAATCAACGGCTAGGAATGACGAAGAAGGGAACGCGTACGGTGCATTGCTGAAACAGG 421
Query 411 GGATCGCAGCTCTTG-TCAATTCTTACGCGAGAAGAAGTTTCTCTTATGCACCATGGGAA 469
||||||||||||| | |||| ||||||||||||| |||||||||||||||||||||||||
Sbjct 422 GGATCGCAGCTCT-GATCAACTCTTACGCGAGAAAAAGTTTCTCTTATGCACCATGGGAA 480
Query 470 GTGAAGACGATGCTGATTCAAGCCATGGTTTCGGAGCCGGCTGCTCGCCGGCAAGCCGAA 529
||||||||||||||||| |||||||||||||||||| |||| ||||||||||||||||||
Sbjct 481 GTGAAGACGATGCTGATCCAAGCCATGGTTTCGGAGTCGGCGGCTCGCCGGCAAGCCGAA 540
Query 530 CAGTTCGCCGTCGCTAACGTGGCTTGTGACTaaaaaaaCACTGAGAATCTAGTTACTTTT 589
|| ||||||||||||||||| ||||||||||||||| |||||||| | ||||||||||
Sbjct 541 CATTTCGCCGTCGCTAACGTTGCTTGTGACTAAAAA--CACTGAGA--C-AGTTACTTTT 595
Query 590 GTCGTCTTTAGGTTT-GAATTTAAGCTTTTTGTCGTGTA-CC-----------C--A--A 632
||||||||||||||| ||||||||||||||||||||||| || | | |
Sbjct 596 GTCGTCTTTAGGTTTTGAATTTAAGCTTTTTGTCGTGTAACCAAAGTTTGATTCCGATCA 655
Query 633 GTTTGCTACTAGATGATGGGCCTACGTTTTTAAGGCCCAAATTAAACAGAGACCATGAGT 692
|||||||||||||| |||||||| || ||||||||||||||||| ||||| ||||
Sbjct 656 GTTTGCTACTAGATTATGGGCCTCCGA----AAGGCCCAAATTAAACACAGACCTTGAGC 711
Query 693 GTTTTGTAGTGTTTGGAAACGACTCTTCTTATATACTCTC 732
| |||||||||||||| |||||||||||||||||||||||
Sbjct 712 GCTTTGTAGTGTTTGGGAACGACTCTTCTTATATACTCTC 751
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35515541929
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5