BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480881
Length=744
Score E
Sequences producing significant alignments: (Bits) Value
AT2G20520.1 | Symbols: FLA6 | FASCICLIN-like arabinogalactan 6 ... 1103 0.0
> AT2G20520.1 | Symbols: FLA6 | FASCICLIN-like arabinogalactan
6 | chr2:8840663-8841461 FORWARD LENGTH=799
Length=799
Score = 1103 bits (597), Expect = 0.0
Identities = 695/744 (93%), Gaps = 0/744 (0%)
Strand=Plus/Plus
Query 1 ATGTCTTCATCAATATTCTCTTCTGTTGTCCTCTTCTTCTTCCTTTTCACCATCCCATAC 60
||||| || ||| ||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct 1 ATGTCCTCGTCACTATTCTCTTATGTTGTCCTCTTAATCTTCCTTTTCACCATCCCATAC 60
Query 61 ATTCAAAGCCAACCCATTGCTCCAGCTCCGACCACCGAAACAAGTCCCATCAATCTCACA 120
||||||||||| |||| |||||||||||| ||||| |||| |||||||||||||||||||
Sbjct 61 ATTCAAAGCCAGCCCACTGCTCCAGCTCCAACCACTGAAAAAAGTCCCATCAATCTCACA 120
Query 121 GCGATTCTTGAAACTGGTCACCAATTTACTACATTAATACGACTCCTCAACACAACTCAA 180
|||||||||||| |||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct 121 GCGATTCTTGAAGCTGGTCACCAATTTACCACATTAATACAACTCCTCAACACAACTCAA 180
Query 181 GTGGGGTTTCAGGTAAGTGTTCAACTCAATAGCTCTGATCAAGGGATGACTATATTTGCA 240
|| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 181 GTCGGGTTTCAGGTAAGTGTACAACTCAATAGCTCTGACCAAGGGATGACTATATTTGCC 240
Query 241 CCAACAGATAACGCATTCAACAACCTTAAACCCGGAACTTTAAACAGTCTCACATATCAA 300
||||||||||||||||||||||| |||||||||||||| |||||||||| |||||||||
Sbjct 241 CCAACAGATAACGCATTCAACAAGCTTAAACCCGGAACCCTAAACAGTCTGACATATCAA 300
Query 301 CAACAAATCCAGCTCATGCTCTACCATATCATTCCAAAATACTACTCTCTGAGCGATCTT 360
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 301 CAACAAATCCAGCTCATGCTCTACCATATCATTCCAAAATACTACTCTCTAAGCGATCTT 360
Query 361 CTATTAGCAAGTAATCCCATTAGAACTCAGGCTACGGGATATGAAGGAGGCGTTTTTGGA 420
|| ||||||||||||||| |||||||||||||||||||| | || ||||| ||||||||
Sbjct 361 CTCTTAGCAAGTAATCCCGTTAGAACTCAGGCTACGGGACAAGACGGAGGTGTTTTTGGG 420
Query 421 TTAAATTTTACAGGACAAGCACAAAGCAACCAAGTGAATGTTTCGACGGGTGTTGTTGAG 480
|||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 421 TTAAATTTCACAGGACAAGCACAAAGCAACCAAGTGAATGTTTCCACCGGTGTTGTTGAG 480
Query 481 ACTCGGATCAATAATGCATTAAGACAACAGTTTCCACTAGCAGTTTACGTGGTGGACAGT 540
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 481 ACTCGGATCAATAATGCATTAAGGCAACAGTTTCCTCTAGCAGTTTACGTGGTGGACAGT 540
Query 541 GTGTTGTTACCCGAAGAGTTGTTCGGAACAAAGACCACTCCCACCGGAGCTCCGGCCCCG 600
|||||||| || || ||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 541 GTGTTGTTGCCGGAGGAGTTATTCGGAACAAAGACCACTCCCACCGGAGCTCCTGCCCCG 600
Query 601 AAATCCACAACTTCATCGTCTGATGCCGATTCTCCAGCTGGTGATGATGAGCACAAATCT 660
|||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 601 AAATCCTCAACTTCATCGTCTGATGCCGATTCTCCAGCTGCTGATGATGAGCACAAATCT 660
Query 661 GCCGGATCAAGCATGAAGAAGACAAGTCTACGGATTGTTCTTGGCTTTGCATTGTTTTGT 720
|||||||||||| |||||| |||||||||| |||||||| || |||||||||||||||||
Sbjct 661 GCCGGATCAAGCGTGAAGAGGACAAGTCTAGGGATTGTTGTTAGCTTTGCATTGTTTTGT 720
Query 721 TGTTCGGTTATATATATTTCTTGA 744
|| ||||||||||||||| |||||
Sbjct 721 TGCTCGGTTATATATATTGCTTGA 744
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36118351693
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5