BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480882
Length=1113
Score E
Sequences producing significant alignments: (Bits) Value
AT2G20530.1 | Symbols: ATPHB6, PHB6 | prohibitin 6 | chr2:88419... 1698 0.0
AT4G28510.1 | Symbols: ATPHB1, PHB1 | prohibitin 1 | chr4:14084... 767 0.0
AT1G03860.1 | Symbols: ATPHB2, PHB2 | prohibitin 2 | chr1:97930... 481 7e-135
> AT2G20530.1 | Symbols: ATPHB6, PHB6 | prohibitin 6 | chr2:8841972-8844000
FORWARD LENGTH=1165
Length=1165
Score = 1698 bits (919), Expect = 0.0
Identities = 1053/1116 (94%), Gaps = 15/1116 (1%)
Strand=Plus/Plus
Query 1 AACAAAATCCTGATTGCTGAGCTTTAAACCCTAACCCctctcttcttctctcttctcCTC 60
||||||||||||||| |||||||||||||||||| ||| ||| ||||||||||||||| |
Sbjct 1 AACAAAATCCTGATTTCTGAGCTTTAAACCCTAA-CCC-CTC-TCTTCTCTCTTCTCCAC 57
Query 61 GCCATTTCCAGAATTTTCAGGTCTTCGGCT-AAAACGATGAATTTTAAGAATGTCAAAGT 119
|||||||||||||||||||||| ||| | | |||| ||||||||||||||||||||||||
Sbjct 58 GCCATTTCCAGAATTTTCAGGTGTTC-G-TGAAAA-GATGAATTTTAAGAATGTCAAAGT 114
Query 120 TCCCAAAGGTCCTGGTGGTGGTGTTATAGCTGCGGTGGTTATTGGTGGGCTCGGTCTTTA 179
||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 115 TCCCAAAGGTCCTGGTGGTGGTGTTATAGCTGCGGTGGTTATTGGGGGGCTCAGTCTTTA 174
Query 180 CGGCGCTACACACTCTCTCTACAATGTCGATGGAGGTCATCGAGCCATCGTCTTTAACCG 239
||| ||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 175 CGGTGCTACGCACACTCTCTACAATGTCGATGGAGGTCATCGAGCCATTGTCTTTAACCG 234
Query 240 GCTTGTTGGTATCAAAGACAAGGTCTACCCTGAGGGTACTCACCTTATGATTCCGTGGTT 299
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 235 GCTTGTTGGTATCAAAGACAAGGTCTACCCTGAGGGTACTCACCTTATGATTCCATGGTT 294
Query 300 CGAAAGGCCAATCATCTATGACGTTCGTGCAAAGCCTTATCTAGTTGAGAGTACATCCGG 359
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 295 CGAAAGGCCAATCATCTATGACGTTCGTGCAAAGCCTTATCTAGTTGAGAGCACATCTGG 354
Query 360 GAGCCGTGATCTCCAGATGGTTAAGATTGGGCTTCGGGTTCTTACCCGTCCTATGGCCAA 419
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 355 GAGCCGTGATCTCCAGATGGTTAAGATTGGGCTTCGGGTTCTCACCCGTCCTATGGCTGA 414
Query 420 CCAACTACCAGAGGTATACCGGTCCCTTGGTGAGAATTACCGCGAGAGAGTTTTGCCTTC 479
|||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 415 CCAATTACCAGAGGTATACCGGTCCCTTGGTGAGAATTACCGCGAGAGAGTCTTGCCTTC 474
Query 480 TATCATCCATGAGACCTTGAAAGCTGTGGTTGCTCAGTACAATGCGAGCCAGCTTATTAC 539
||||||||| |||||||||||||||||||||||||||||||| || ||||| ||||||||
Sbjct 475 TATCATCCACGAGACCTTGAAAGCTGTGGTTGCTCAGTACAACGCAAGCCAACTTATTAC 534
Query 540 CCAGAGAGAGTCGGTGAGTAGAGAAATCAGGAAAATCCTAACTGC-ACGAGCCGCAAACT 598
|||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||
Sbjct 535 TCAGAGAGAGTCGGTGAGTAGAGAAATCAGGAAAATCCTAACT-CTAAGAGCCGCAAACT 593
Query 599 TCTACATTGCACTGGATGATGTGTCCATCACAGGCTTGACATTTGGAAAGGAGTTCACGG 658
|| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 594 TCCACATTGCACTGGATGATGTGTCCATCACAGGCTTGACATTCGGAAAGGAGTTCACGG 653
Query 659 CAGCCATAGAAGGAAAGCAGGTCGCAGCTCAAGAGGCCGAGCGGGCTAAGTTCATTGTGG 718
||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |
Sbjct 654 CAGCCATAGAAGGAAAGCAGGTCGCTGCTCAAGAGGCCGAACGGGCTAAGTTCATTGTCG 713
Query 719 AAAAAGCTGAACAGGACAAGCGAAGTGCCGTTATTCGCGCTGAGGGAGAAGCCAAGAGTG 778
| |||||||||||||||||| ||||||| ||||| ||||| |||||||||||||||||||
Sbjct 714 AGAAAGCTGAACAGGACAAGAGAAGTGCTGTTATCCGCGCCGAGGGAGAAGCCAAGAGTG 773
Query 779 CTCAGCTCATAGGTCAAGCAATCGCAAACAACCAAGCGTTCTTAACGCTGAGGAAGATCG 838
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 774 CTCAGCTCATTGGTCAAGCAATCGCAAACAACCAAGCGTTCTTAACACTGAGGAAGATCG 833
Query 839 AAGCAGCTAGAGAGATCGCACAGACCATCTCAAAGTCGGCAAATAAGGTTTACTTGAGCT 898
||||||||||||||||||||||||||||||| | |||||| || ||||||||||||||||
Sbjct 834 AAGCAGCTAGAGAGATCGCACAGACCATCTCTAGGTCGGCGAACAAGGTTTACTTGAGCT 893
Query 899 CTAACGATCTATTGCTTAACCTACAGGCTATGGACCTTGATGTGAAGCCCAAGAAGTAGA 958
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 894 CTAACGATCTGTTGCTTAACCTACAGGCTATGGACCTTGATGTGAAGCCGAAGAAGTAGA 953
Query 959 GGATGATATGATTAAACCACGCCAGAGCTCTCTCTCTTCCATAATCGTCTTTCCAATTCA 1018
| |||||||||||||||||| |||||||||| ||| | |||||||||| ||| |||||||
Sbjct 954 GAATGATATGATTAAACCACACCAGAGCTCT-TCT-T-CCATAATCGTATTTTCAATTCA 1010
Query 1019 CGGATTCTTAGACTAAAAGCTATG-GATTCTATCTTGTGAATTTCAGACACTATCGTGCG 1077
||||||||||||| |||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 1011 CGGATTCTTAGACCAAAAGCTATGAG-TTCTATCTTGTGAATTTCAGACACTATCGTGCG 1069
Query 1078 TTTTGTAGTCTTTCTTTTGGGAGATCAAGaaaaaaa 1113
||| ||||||||||||||| ||||||||||| ||||
Sbjct 1070 TTT-GTAGTCTTTCTTTTGTGAGATCAAGAAGAAAA 1104
> AT4G28510.1 | Symbols: ATPHB1, PHB1 | prohibitin 1 | chr4:14084749-14086844
REVERSE LENGTH=1185
Length=1185
Score = 767 bits (415), Expect = 0.0
Identities = 654/771 (85%), Gaps = 10/771 (1%)
Strand=Plus/Plus
Query 158 TTATTGGTGGGCTCGGTCTTTACGGCGCTACACACTCTCTCTACAATGTCGATGGAGGTC 217
||||||||||||| ||||| || || ||||| ||| |||||||||||| || ||||| |
Sbjct 165 TTATTGGTGGGCTTGGTCTCTATGGTGCTACGCACAGTCTCTACAATGTTGAAGGAGGAC 224
Query 218 ATCGAGCCATCGTCTTTAACCGGCTT-GTTGGTATCAAAGACAAGGTCTACCCTGAGGGT 276
||||||||||| | || || | | || || ||||| ||||| ||||| ||||||||||||
Sbjct 225 ATCGAGCCATCATGTTCAATC-GTTTAGTCGGTATTAAAGATAAGGTTTACCCTGAGGGT 283
Query 277 ACTCACCTTATGATTCCGTGGTTCGAAAGGCCAATCATCTATGACGTTCGTGCAAAG-CC 335
|| |||||||||||||| ||||| |||||||| ||||||||||||||||||| | ||
Sbjct 284 ACACACCTTATGATTCCTTGGTTTGAAAGGCCGGTCATCTATGACGTTCGTGC-TCGACC 342
Query 336 TTATCTAGTTGAGAGTACATCCGGGAGCCGTGATCTCCAGATGGTTAAGATTGGGCTTCG 395
||| || ||||||||||||||||| ||||||||||| |||||||| || ||||||||| |
Sbjct 343 TTACCTTGTTGAGAGTACATCCGGAAGCCGTGATCTTCAGATGGTGAAAATTGGGCTTAG 402
Query 396 GGTTCTTACCCGTCCTATGGCCA-ACCAACTACCAGAGGTATACCGGTCCCTTGGTGAGA 454
|||||| || ||||| |||| || |||| |||| || | ||| | |||||||||||
Sbjct 403 GGTTCTCACACGTCCCATGG-CAGACCAGTTACCTGAAATCTACAGAAGCCTTGGTGAGA 461
Query 455 ATTACCGCGAGAGAGTTTTGCCTTCTATCATCCATGAGACCTTGAAAGCTGTGGTTGCTC 514
| ||| ||||||||||| | |||||||| ||| | ||||| |||||||||||||||||||
Sbjct 462 ACTACAGCGAGAGAGTTCTACCTTCTATAATCAACGAGACTTTGAAAGCTGTGGTTGCTC 521
Query 515 AGTACAATGCGAGCCAGCTTATTACCCAGAGAGAGTCGGTGAGTAGAGAAATCAGGAAAA 574
|||||||||| |||||||||||||| ||||||||| |||| ||||| || |||||||| |
Sbjct 522 AGTACAATGCAAGCCAGCTTATTACTCAGAGAGAGGCGGTCAGTAGGGAGATCAGGAAGA 581
Query 575 TCCTAACTGCACGAGCCGCAAACTTCTACATTGCACTGGATGATGTGTCCATCACAGGCT 634
| || |||| |||||| ||||||||| | |||| || || ||||||||||||||| |
Sbjct 582 TTCTGACTGAACGAGCAGCAAACTTCAATGTTGCGCTTGACGATGTGTCCATCACAAACC 641
Query 635 TGACATTTGGAAAGGAGTTCACGGCAGCCATAGAAGGAAAGCAGGTCGCAGCTCAAGAGG 694
||||||| || ||||||||||| || ||||| |||| ||||||||| || ||||||||||
Sbjct 642 TGACATTCGGGAAGGAGTTCACAGCTGCCATTGAAGCAAAGCAGGTGGCGGCTCAAGAGG 701
Query 695 CCGAGCGGGCTAAGTTCATTGTGGAAAAAGCTGAACAGGACAAGCGAAGTGCCGTTATTC 754
| |||||||||||||||||||| || || || ||||| |||||| ||||||| ||||| |
Sbjct 702 CTGAGCGGGCTAAGTTCATTGTTGAGAAGGCCGAACAAGACAAGAGAAGTGCTGTTATCC 761
Query 755 GCGCTGAGGGAGAAGCCAAGAGTGCTCAGCTCATAGGTCAAGCAATCGCAAACAACCAAG 814
|||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 762 GCGCCCAGGGAGAAGCCAAGAGTGCTCAGCTCATTGGTCAAGCAATTGCAAACAACCAAG 821
Query 815 CGTTCT-TAACGCTGAGGAAGATCGAAGCAGCTAGAGAGATCGCACAGACCATCTCAAAG 873
|||| | | ||||| ||||||||||| || || |||||||| ||||||||||| ||||
Sbjct 822 CGTT-TATCACGCTCAGGAAGATCGAGGCTGCAAGAGAGATTGCACAGACCATAGCAAAC 880
Query 874 TCGGCAAATAAGGTTTACTTGAGCTCTA-ACGATCTATTGCTTAACCTACA 923
||||| || ||||||||||||||||| | ||||||| ||||||||||||||
Sbjct 881 TCGGCGAACAAGGTTTACTTGAGCTC-AGACGATCTTTTGCTTAACCTACA 930
> AT1G03860.1 | Symbols: ATPHB2, PHB2 | prohibitin 2 | chr1:979308-981885
REVERSE LENGTH=1280
Length=1280
Score = 481 bits (260), Expect = 7e-135
Identities = 613/781 (78%), Gaps = 34/781 (4%)
Strand=Plus/Plus
Query 157 GTTATTGGTGGGCTCGGTCTTTACGGCGC-TACACACT-CTCTCTACAATGTCGATGGAG 214
|||||||||||||||||| | || || | ||| | | ||||||||||||||||||||
Sbjct 183 GTTATTGGTGGGCTCGGTGTCTA-TGCCCTTAC-TAATAGTCTCTACAATGTCGATGGAG 240
Query 215 GTCATCGAGCCATCGTCTTTAACCGGCTT-GTTGGTATCAAAGACAAGGTCTACCCTGAG 273
| || || || || | || |||| | || ||||||||| || ||||| ||||| ||
Sbjct 241 GACACCGTGCTGTCATGTTCAACC-GATTAACTGGTATCAAGGAAAAGGTGTACCCAGAA 299
Query 274 GGTACTCACCTTATGATTCCGTGGTTCGAAAGGCCAATCATCTATGACGTTCGTGCAA-A 332
|| || || ||||| | || ||||| |||||||||||||||||||||||||||||| |
Sbjct 300 GGCACACATTTTATGGTGCCATGGTTTGAAAGGCCAATCATCTATGACGTTCGTGCACGA 359
Query 333 GCCTTATCTAGTTGAGAGTAC-ATCCGGGAGCCGTGATCTCCAGATGGTTAAGATTGGGC 391
||||| || || ||||| || | | || || | |||||| |||||||| || |||||
Sbjct 360 -CCTTACCTTGTAGAGAGCACCA-CTGGTAGTCATGATCTTCAGATGGTGAAAATTGGA- 416
Query 392 TTC-GGGTTCTTACCCGTCCTATGGCCAACCAACTACCAGAGGTATACCGGTCCCTTGGT 450
|| ||||||| || ||||| |||| ||| | || || | ||||| |||||||
Sbjct 417 TTAAGGGTTCTCACACGTCCCATGGGTGACCGTTTGCCTCAGATTTACCGAACCCTTGGC 476
Query 451 GAGAATTACCGCGAGAGAGTT-TTGCCTTCTATCATCCATGAGACCTTGAAAGCTGTGGT 509
||||| ||| |||| || ||| || ||||| ||||||||||| ||| | ||||| |||||
Sbjct 477 GAGAACTACAGCGAAAGGGTTCTT-CCTTCCATCATCCATGAAACCCTAAAAGCAGTGGT 535
Query 510 TGCTCAGTACAATGCGAGCCAGCTTATTACCCAGAGAGA-GTCGGTGAGTAGAGAAATCA 568
|||||||||||||| |||||||| |||||||||||||| | | ||||| ||||| || |
Sbjct 536 AGCTCAGTACAATGCAAGCCAGCTCATTACCCAGAGAGAAG-CTGTGAGCAGAGAGAT-A 593
Query 569 GGAAA-ATCCTAACTGCA-CGAGCCGCAAACTTCT-ACATTGCACTGGATGATGTGTCCA 625
| || || || || | | || || | ||||| | ||||||| || |||||||| ||||
Sbjct 594 CGCAAGATTCTGACAG-AGCGGGCTTCTAACTT-TGACATTGCTCTTGATGATGTCTCCA 651
Query 626 TCACAGGCT-TGACATTTGG-AAAGGAGTTCACGGCAGCCATAGAAGG-AAAGCAGGTCG 682
|||| | || ||||||| || |||| ||||||| ||||| || || || ||| || || |
Sbjct 652 TCAC-GACTCTGACATTCGGCAAAG-AGTTCACCGCAGCTATCGA-GGCAAAACAAGTTG 708
Query 683 CAGCTCAAGAGGCCGAGCGGGCTAAGTTCATTGTGGAAAAAGCTGAACAGGACAAGCGAA 742
| ||||| || || || |||||||||||||||||||| ||||| ||||| |||| | |||
Sbjct 709 CTGCTCAGGAAGCTGAACGGGCTAAGTTCATTGTGGAGAAAGCCGAACAAGACAGGAGAA 768
Query 743 GTGCCGTTATTCGCGCTG-AGGGAGAAGCCAAGAGTGCTCAGCTCATAGGTCAAGCAATC 801
|||| ||||| || || | |||||||||| || ||||||||||| || || ||||||||
Sbjct 769 GTGCGGTTATCCGTGC-GCAGGGAGAAGCTAAAAGTGCTCAGCTTATCGGACAAGCAATT 827
Query 802 GCAAACAACCAAGCGTTCTTAACGCTGAGGAAGATCGAAGCAGCTAGAGAGATCGCACAG 861
|| ||||| || || ||| | || ||||| ||||| ||||| || |||||||| ||||||
Sbjct 828 GCGAACAATCAGGCATTCATCACTCTGAGAAAGATTGAAGCTGCGAGAGAGATTGCACAG 887
Query 862 ACCATCT-CA-AAGTCGGCAAATAAGGTTTACTTGAGCTCTAACGATCTATTGCTTAACC 919
||||| | || || || || || ||||||||| ||||||| |||||||| ||||||||||
Sbjct 888 ACCAT-TGCACAA-TCTGCTAACAAGGTTTACCTGAGCTCCAACGATCTGTTGCTTAACC 945
Query 920 T 920
|
Sbjct 946 T 946
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54567992415
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5