BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480887
Length=1576
Score E
Sequences producing significant alignments: (Bits) Value
AT2G20570.2 | Symbols: GPRI1 | GBF's pro-rich region-interactin... 1399 0.0
> AT2G20570.2 | Symbols: GPRI1 | GBF's pro-rich region-interacting
factor 1 | chr2:8855358-8857756 FORWARD LENGTH=1673
Length=1673
Score = 1399 bits (757), Expect = 0.0
Identities = 916/986 (93%), Gaps = 37/986 (4%)
Strand=Plus/Plus
Query 590 GTGGATTGGACACCAGAGCTACACAGGAGATTCGTGGAGGCAGTGGAACAGTTAGGAGTG 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 642 GTGGATTGGACACCAGAGCTACACAGGAGATTCGTGGAGGCAGTGGAACAGTTAGGAGTG 701
Query 650 GACAAAGCTGTTCCTTCTCGAATTCTGGAGCTTATGGGAGTCCATTGTCTCACTCGTCAC 709
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 702 GACAAAGCTGTTCCTTCTCGAATTCTGGAGCTTATGGGAGTCCATTGTCTCACTCGTCAC 761
Query 710 AACGTTGCTAGTCACCTCCAAAAATATAGGTCTCATCGGAAACATTTGCTAGCTCGTGAG 769
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 762 AACGTTGCTAGTCACCTCCAAAAATATAGGTCTCATCGGAAACATTTGCTAGCTCGTGAG 821
Query 770 GCCGAAGCGGCTAATTGGACACGTAAAAGGCATATCTATGGAGTAGACACCGGAGGTAAT 829
||||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||
Sbjct 822 GCCGAAGCGGCTAATTGGACACGCAAAAGGCATATCTATGGAGTAGACACCGGTGCTAAT 881
Query 830 ATTAATGGTCGGAGTAAAAATGGATGGCTTGCACCGGCACCCACTCTCGGGTTT------ 883
|||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 882 CTTAATGGTCGGACTAAAAATGGATGGCTTGCACCGGCACCCACTCTCGGGTTTCCACCA 941
Query 884 CCACCA--C----C---T------CCACCTGTCCATCACCATCATTTTAGACCCTTGCAT 928
|||||| | | | ||||||||||| |||||||||||||| ||| |||||
Sbjct 942 CCACCACCCGTGGCTGTTGCACCGCCACCTGTCCACCACCATCATTTTAGGCCCCTGCAT 1001
Query 929 GTGTGGGGACATCCCACGGTTGATCAGTCCATCATGCCGCATGTGTGGCCAAAACACTTA 988
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 1002 GTGTGGGGACATCCCACGGTTGATCAGTCCATTATGCCGCATGTGTGGCCCAAACACTTA 1061
Query 989 CCTCCACCTTCTACCGTCATGCCTAATCCGCCGTTTTGGGTCTCCGATTCTCCATATTGG 1048
||||| |||||||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1062 CCTCCGCCTTCTACCGCCATGCCTAATCCGCCGTTTTGGGTCTCCGATTCTCCCTATTGG 1121
Query 1049 CATCCAATGCATAACGGGGCGACTCCGTATTTGCCGACCGTAGCTACGAGATTTAGAGCA 1108
|||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct 1122 CATCCAATGCATAACGGGACGACTCCGTATTTACCGACCGTAGCTACGAGATTTAGAGCA 1181
Query 1109 CCGCCGGTTGCCGGAATCCCACATGCTCTGCCGCCACATCACACAG-TGTACAAACCAAA 1167
||||| |||||||||||||| |||||||||||||| |||||||| | |||||||||||||
Sbjct 1182 CCGCCAGTTGCCGGAATCCCGCATGCTCTGCCGCCGCATCACAC-GATGTACAAACCAAA 1240
Query 1168 TCATGGCTTTGGTGGTGCTCGTCCTCCGGTGGACTTACATCCGTCAAAAGAGAGCGTGGA 1227
|| ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1241 TCTTGGATTTGGTGGTGCTCGTCCTCCGGTAGACTTACATCCGTCAAAAGAGAGCGTGGA 1300
Query 1228 TGCAGCCATAGGAGATGTATTAACGAGGCCATGGCTGCCACTTCCGTTGGGATTGAAGCC 1287
||||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||
Sbjct 1301 TGCAGCCATAGGAGATGTATTGACGAGGCCATGGCTGCCACTTCCGTTGGGATTAAATCC 1360
Query 1288 ACCGGCTGTTGACGGTGTTATGACGGAGCTTCACCGTCACGGTGTCTCCGAGGTTCCTCC 1347
||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 1361 GCCGGCTGTTGACGGTGTTATGACAGAGCTTCACCGTCACGGTGTCTCTGAGGTTCCTCC 1420
Query 1348 GACAGCGTCTTGTGCCTGAAACGCACAAGCGCCGTAGGCAAGCC-GAACCAAACAAAA-T 1405
||| ||||||||||||||||||||||||| |||||||||||| ||||||||||||| |
Sbjct 1421 GACCGCGTCTTGTGCCTGAAACGCACAAGATCCGTAGGCAAGCGAGAACCAAACAAAAAT 1480
Query 1406 TCGACGACATGTCTTTCAATTATTGTACCTTTATTTTTCCAAGGGTTGtttttgtttttt 1465
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1481 TCGACGACATGTCTTTCAATTATTGTACTTTTATTTTTCCAAGGGTTGTTTTTGTTTT-- 1538
Query 1466 tGACCCTTGTTGAGTGTTGAGAGTTTAGGGTCTCTTTACTTAATCGTCCCATGTGACTAA 1525
||||||||||| |||| |||||| | |||||||||||||||||||||||||||||
Sbjct 1539 -GACCCTTGTTG--TGTTAAGAGTT-A----CTCTTTACTTAATCGTCCCATGTGACTAA 1590
Query 1526 TAAGGAG-CC-TTTTCATATGTATCT 1549
||||||| || |||||||||||||||
Sbjct 1591 TAAGGAGACCCTTTTCATATGTATCT 1616
Score = 870 bits (471), Expect = 0.0
Identities = 559/599 (93%), Gaps = 16/599 (3%)
Strand=Plus/Plus
Query 1 GAAGAAAGAGACTTACTTTGGATATC-AAACATGTCTAGCTCTCTATTC----TAAGTCT 55
|||||||||||||||||||||||||| |||||||||| ||||||||||| |||||||
Sbjct 1 GAAGAAAGAGACTTACTTTGGATATCAAAACATGTCTTGCTCTCTATTCTAATTAAGTCT 60
Query 56 ACCCTATCTATAACATACATAAAtctctctctctctcCGATTATATTTGGATCTACAAGT 115
| |||||||| |||||||||||| | |||| ||| |||||||||||||||||||||||
Sbjct 61 AGCCTATCTACAACATACATAAA---C-CTCTATCTACGATTATATTTGGATCTACAAGT 116
Query 116 GAAGATTGATCGATGTTAGCTCTGTCTCCGGCGACAAGAGATGGTTGCGAGGGAGCGTCA 175
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 117 GAAGATTGATCGATGTTAGCTCTGTCTCCGGCGACAAGAGATGGTTGCGACGGAGCGTCA 176
Query 176 GAGTTTCTTGATACATCGTGTGGATTCACGATCA-A--CCCGGAGGAGGAGGATGAGTTT 232
|||||||||||||| ||||||||||||||||| | | ||||||||||||||| ||||||
Sbjct 177 GAGTTTCTTGATACGTCGTGTGGATTCACGATTATAAACCCGGAGGAGGAGGAGGAGTTT 236
Query 233 CCGGACTTT-GCTGACCACGGAGATCTTCTTGACATCATCGACTTCGACGATATATTCGG 291
||||| ||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 237 CCGGA-TTTCGCTGACCACGGTGATCTTCTTGACATCATTGACTTCGACGATATATTCGG 295
Query 292 TGTCGCCGGAGATGTGCTTCCTGACTTGGAGATCGACCCCGAGATCTTATCCGGGGATTT 351
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 296 TGTGGCCGGAGATGTGCTTCCTGACTTGGAGATCGACCCTGAGATCTTATCCGGGGATTT 355
Query 352 CTCTGATCACATGAACGCTTCTTCAACGATTACTACGACGTCGGATAAGACTGATAGTCA 411
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 356 CTCCAATCACATGAACGCTTCTTCAACGATTACTACGACGTCGGATAAGACTGATAGTCA 415
Query 412 AGGGGAGACTAAC-AAGAGTATTTCAGGGAAAGGTGAAGAAGTTGTAAGCAAAAGAGACG 470
||||||||||| | ||| ||| ||| ||||||||||||||||| ||||||||||||||||
Sbjct 416 AGGGGAGACTA-CTAAGGGTAGTTCGGGGAAAGGTGAAGAAGTCGTAAGCAAAAGAGACG 474
Query 471 ATGCTGCGGCGGAGACGGTGACTTATGACCGTGAAAGTGACCGGAAAAGGAAGTATTCGT 530
||| ||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |
Sbjct 475 ATGTTGCGGCGGAGACGGTGACTTATGACGGTGACAGTGACCGGAAAAGGAAGTATTCCT 534
Query 531 CTTCAGCTTCTTCCAAGAACAATCGGATCAGTAACAACGAAGGGAAGCGAAAGGTGAAG 589
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 535 CTTCAGCTTCTTCCAAGAACAATCGGATCAGTAACAACGAAGGGAAGAGAAAGGTGAAG 593
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77810844750
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5