BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480895
Length=1611
Score E
Sequences producing significant alignments: (Bits) Value
AT2G20610.1 | Symbols: SUR1, HLS3, RTY, ALF1, RTY1 | Tyrosine t... 2593 0.0
> AT2G20610.1 | Symbols: SUR1, HLS3, RTY, ALF1, RTY1 | Tyrosine
transaminase family protein | chr2:8877960-8880388 REVERSE
LENGTH=1669
Length=1669
Score = 2593 bits (1404), Expect = 0.0
Identities = 1548/1617 (96%), Gaps = 11/1617 (1%)
Strand=Plus/Plus
Query 1 TTATAGAAAAAAGAACTCAAAGCAAAGAGAGATA-ATGAGCGAAGAACAACCACACGCCA 59
||||||||| |||||||||||||| ||||||| | |||||||||||||||||||||||||
Sbjct 57 TTATAGAAAGAAGAACTCAAAGCACAGAGAGA-AGATGAGCGAAGAACAACCACACGCCA 115
Query 60 ATCTGGCGGTTCCCGCGTTTAAAACTGAGAAAGATCCCATAACGCAAACGCAAAATAGTC 119
|||| ||||||||||||||||||||||||||||| |||||||||||||| | |||| |||
Sbjct 116 ATCTAGCGGTTCCCGCGTTTAAAACTGAGAAAGAGCCCATAACGCAAACACGAAATGGTC 175
Query 120 AAAGTAGCGTTTGGCGTTTCGGTGGAAGCGATAAGGCAGCGAAAGCATCCACCGTAACAC 179
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 176 AAAGTAGCGTTTGGCGTTTCGGTGGAAGTGATAAGGCAGCGAAAGCATCCACCGTAACGC 235
Query 180 TGAGAGGTGTCATCTACATGCTCTTCGACAACTGCAGCAAAGATGTCAATAAGACCATTT 239
| ||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct 236 TTAGAGGTGTCATCTACATGCTCTTCGACAACTGCGGCAAAGACGTCAATAAGACCATTT 295
Query 240 TACCCCTCGGCCACGGTGACCCTTCCGTCTACCCTTGCTTCCGTACCTGTATCGAAGCTG 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 296 TACCCCTCGGCCACGGTGACCCTTCCGTCTACCCTTGCTTCCGTACCTGTATCGAAGCTG 355
Query 300 AAGACGCCGTTGTCGACGTCCTCCGCTCCGGCAAAGGCAATTCTTACGGTCCCGGAGCTG 359
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 356 AAGACGCCGTCGTCGACGTCCTTCGCTCCGGCAAAGGCAATTCTTACGGTCCCGGAGCTG 415
Query 360 GGATTCCCCCCGCAAGACGAGCCGTTGCCGATTATATGAACCGAGATCTTCCGCACAAGT 419
|||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 416 GGATTCTCCCCGCAAGACGAGCCGTTGCTGATTATATGAACCGAGATCTTCCGCACAAGT 475
Query 420 TAACGCCGGAAGATATCTTCCTGACCGCTGGATGCAACCAAGGGATAGAGATCGTGTTCG 479
||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 476 TAACGCCTGAAGATATTTTTCTGACCGCTGGATGCAACCAAGGGATAGAGATCGTGTTCG 535
Query 480 AATCGTTGGCTCGACCAAACGCAAACATCTTGCTCCCACGTCCTGGCTTCCCTCATTACG 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 536 AATCGTTGGCTCGACCAAACGCAAACATCTTGCTCCCACGTCCTGGCTTCCCTCACTACG 595
Query 540 ACGCTCGTGCTGCTTACAGTGGTCTCGAGGTTCGCAAGTTTGATCTTCTTCCTGAGAAAG 599
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 596 ACGCTCGTGCTGCTTACAGTGGTCTCGAGGTTCGCAAGTTTGATCTTCTTCCCGAGAAAG 655
Query 600 AATGGGAGATTGATCTCGAAGGTATTGAAGCCATTGCAGACGAGAACACTGTGGCTATGG 659
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 656 AATGGGAGATTGATCTTGAAGGTATCGAAGCCATTGCAGACGAGAACACTGTGGCTATGG 715
Query 660 TTGTAATTAACCCCAACAATCCCTGTGGAAATGTCTACTCTCACGACCATCTCAAAAAGG 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 716 TTGTAATTAACCCCAACAATCCCTGTGGAAATGTCTACTCTCACGACCATCTCAAAAAGG 775
Query 720 TTGCAGAGACGGCTCGTAAGCTGGGGATAATGGTGATCTCAGACGAAGTATATGACCAAA 779
|||||||||||||| | ||||| |||||||||||||||||||||||||||||||||| ||
Sbjct 776 TTGCAGAGACGGCTAGGAAGCTCGGGATAATGGTGATCTCAGACGAAGTATATGACCGAA 835
Query 780 CTATATTCGGAGACAATCCATTTGTTCCAATGGGAAAGTTCGCATCGATTGTTCCTGTGT 839
|||||||||||||||||||||||||| ||||||| ||||| || ||||| || ||||| |
Sbjct 836 CTATATTCGGAGACAATCCATTTGTTTCAATGGGGAAGTTTGCTTCGATAGTCCCTGTAT 895
Query 840 TGACACTAGCAGGTATATCTAAGGGATGGGTTGTTCCTGGATGGAAAATTGGCTGGATCG 899
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 896 TGACACTAGCAGGCATATCTAAGGGATGGGTTGTTCCTGGATGGAAAATTGGCTGGATCG 955
Query 900 CCTTGAATGATCCCGAGGGCATTTTCGAGACCACCAAGGTGGTACAATCCATCAAACAGA 959
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 956 CCTTGAATGATCCCGAGGGCGTTTTCGAGACCACCAAGGTGTTACAATCCATCAAACAGA 1015
Query 960 ATCTTGACGTAACTCCTGACCCTGCCACAATAATTCAGGCTGCACTTCCCGCGATCCTGG 1019
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1016 ATCTTGACGTAACTCCTGACCCTGCCACAATAATTCAGGCTGCACTTCCAGCGATCCTGG 1075
Query 1020 AGAAAGCGGATAAAAACTTCTTTGCAAAGAAGAACAAGATACTCAAACATAATGTTGATT 1079
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1076 AGAAAGCGGACAAAAACTTCTTTGCAAAGAAGAACAAGATACTCAAACATAATGTTGATT 1135
Query 1080 TGGTGTGTGATAGGCTTAAGGACATCCCCTGTGTCGTTTGTCCCAAGAAACCTGAGTCTT 1139
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1136 TGGTGTGTGATAGGCTCAAGGACATCCCCTGTGTCGTCTGTCCCAAGAAACCTGAGTCTT 1195
Query 1140 GCACTTACTTATTGACAAAGCTTG-AGCTGTCATTGATGGATAACATCAAGGACGATATA 1198
|||||||||||||||||||| ||| ||||||||||||||||||| |||||||||||||||
Sbjct 1196 GCACTTACTTATTGACAAAG-TTGGAGCTGTCATTGATGGATAATATCAAGGACGATATA 1254
Query 1199 GATTTCTGCGTAAAGCTGGCCAGAGAGGAGAATCTCGTGTTTCTACCAGGTGATGCTCTG 1258
||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1255 GATTTTTGCGTAAAACTGGCCAGAGAGGAGAATCTCGTGTTTCTACCAGGGGATGCTCTG 1314
Query 1259 GGTTTGAAGAACTGGATGAGGATAACCATTGGAGTCGAAGCTCATATGCTTGAGGATGCA 1318
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1315 GGTTTGAAGAACTGGATGAGGATAACCATCGGAGTCGAAGCTCATATGCTTGAGGATGCA 1374
Query 1319 CTTGAGAGATTGAAGGGTTTCTGTACACGTCATGCCAAGAAAACAGAGACAGAAACTGAG 1378
||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1375 CTTGAGAGACTGAAGGGTTTCTGTACACGTCATGCCAAGAAGACAGAGACAGAAACTGAG 1434
Query 1379 TCACTTCAAGCTTTGAAACTGAGTGATAATAATCTCGAAATGTAAAACAGAAGAAG--GT 1436
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 1435 TCACTTCAAGCTTTGAAACTGAGTGATAATAATCTCGAAATGTAAAACAGAAGAGGATGT 1494
Query 1437 GTGTGCCCAAAAGAATATTCTTATGAT-GATAATTTTGATTCTTGTTTTTCCATTTTTGA 1495
||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| ||
Sbjct 1495 GTGTGCCCAAAAGAATATTCTTATGATAGATAATTTTGATTCTTGCTTTTCCATTT--GA 1552
Query 1496 TTTCCCTAAGTATTTGATTATCTACGTTAATAAAAACTATGGTTAATTTTTCAA-TAACA 1554
|||||| |||||||||||||||||| ||||||||||||||||||| ||| |||| || ||
Sbjct 1553 TTTCCCAAAGTATTTGATTATCTACATTAATAAAAACTATGGTTA-TTTGTCAAATAGCA 1611
Query 1555 ATATTGGGAACATAAATTAAGGATCTATCATCCATGAAAAAGAATTTCTTTGCTTTT 1611
||||||||||||||||| ||||||||| ||||||||||| |||||||||||| ||||
Sbjct 1612 ATATTGGGAACATAAATGAAGGATCTAGCATCCATGAAAGAGAATTTCTTTGTTTTT 1668
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79567863825
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5