BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480903
Length=1108
Score E
Sequences producing significant alignments: (Bits) Value
AT2G20690.1 | Symbols: | lumazine-binding family protein | chr... 1596 0.0
> AT2G20690.1 | Symbols: | lumazine-binding family protein | chr2:8923305-8924974
FORWARD LENGTH=1206
Length=1206
Score = 1596 bits (864), Expect = 0.0
Identities = 1042/1123 (93%), Gaps = 32/1123 (3%)
Strand=Plus/Plus
Query 1 AAGATTGGTTCTTGAGAAATGATGGCTGCTCGTACTCATTGTATCAACCTCATCCCCAAA 60
||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 20 AAGTTTGGTTCTTGAGAAATGATGGCGGCTCGTACTCATTGTATCAACCTTATCCCCAAA 79
Query 61 GTATGTCTTCCTCAAT-C--GAGAACTGGTGAATCAGTGAGTAATCTCAGATTTGATTGC 117
||||||||||| |||| | |||||||| |||||||||| |||||||||||||||||||
Sbjct 80 GTATGTCTTCCACAATCCTTCAGAACTGGAGAATCAGTGACTAATCTCAGATTTGATTGC 139
Query 118 GTCTCTAACTCATCGAAGCTTTCTCTCAAGACATCATGT-G--G---AAG-A--CATCAC 168
|||||||| |||||||||||||||||||||||||||||| | | ||| | ||||||
Sbjct 140 GTCTCTAAGTCATCGAAGCTTTCTCTCAAGACATCATGTGGAAGATCAAGAACGCATCAC 199
Query 169 CGGAGACAAAATCTCAGCATCCGATCCGTGTTTACTGGAATCGTGGAGGAAATGGGAGAA 228
||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 200 CGGAGGCAAAATCTCAGCATCCGGTCCGTGTTTACTGGAATCGTGGAGGAAATGGGTGAA 259
Query 229 GTCAAGAACTTGGGAATGGCTGATCACGGAGGATTCGACCTCAAAATCGGAGCGAGAGTG 288
|||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 260 GTCAAGGACTTGGGAATGGCCGATCACGGAGGATTCGACCTCAAAATCGGAGCGAGAGTG 319
Query 289 GTGTTAGAGGACGTGAAGCTCGGTGACAGCATCGCGGTGAACGGGACTTGTTTAACGGTG 348
||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||
Sbjct 320 GTGTTAGAGGACGTGAAGCTCGGTGACAGTATCGCCGTGAACGGTACTTGTTTAACGGTG 379
Query 349 ACGGAGTTCAACGCAGAGGAGTTCACAGTGGGGTTAGCACCAGAGACGCTGCGAAAAACA 408
|||||||| |||||||||||||||||||| ||||||||||| ||||||||| ||||||||
Sbjct 380 ACGGAGTTTAACGCAGAGGAGTTCACAGTAGGGTTAGCACCGGAGACGCTGAGAAAAACA 439
Query 409 TCGTTGGAGGAGCTAAAGAAAGGATCTCCGGTGAATCTGGAGCGTGCGTTGCAGCCAGTG 468
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 440 TCGTTGGAGGAGTTAAAGAAAGGATCTCCGGTGAATCTGGAGCGTGCGTTGCAGCCAGTG 499
Query 469 AGCCGGATGGGTGGACACGTGGTTCAGGGACACGTGGATGGGACGGGAGTGATTGAATCA 528
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 500 AGCAGGATGGGTGGACACGTGGTTCAGGGACACGTGGATGGGACGGGAGTGATTGAATCA 559
Query 529 ATGGAGGTAGAGGGTGATTCTCTGTGGGTGAAGGTGAAAGCTGACAAGGGTTTGTTGAAA 588
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 560 ATGGAGGTAGAGGGTGATTCTTTGTGGGTGAAGGTGAAAGCTGACAAGGGTTTGTTGAAA 619
Query 589 TACATTGTGCCTAAAGGATTTGTGGCTGTTGATGGGACTAGCTTGACGGTTGTTGATGTG 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 620 TACATTGTGCCTAAAGGATTTGTGGCTGTTGATGGGACTAGCTTGACGGTTGTTGATGTG 679
Query 649 TTTGATGAAGAGAGTTGTTTCAATTTCATGATGGTTGCTTATACGCAGCAGAAAGTGGTG 708
|||||||||||||| |||||||||||||||||| ||||||||||||| ||||| || |||
Sbjct 680 TTTGATGAAGAGAGCTGTTTCAATTTCATGATGATTGCTTATACGCAACAGAATGTAGTG 739
Query 709 ATTCCTACTAAGA-GTATTGGGCAGAAAGTGAATCTTGAGGTTGATATCATGGGGAAATA 767
||||| ||||||| | ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 740 ATTCCGACTAAGAAG-ATTGGGCAGAAAGTGAATCTTGAGGTTGATATCATGGGGAAGTA 798
Query 768 TGTTGAGAGGCTTCTCACCAGTGGTGGCTTCTCCTTGAACATGGCAGAGGAAAAGAAATG 827
|||||||||||||||||||||||||||||||||| || | || | || |||| | ||
Sbjct 799 TGTTGAGAGGCTTCTCACCAGTGGTGGCTTCTCC---AA-A-GGAAAAG-AAAATATTTG 852
Query 828 ATTAGATGGGACTTGGGATTGGGAGCTTTTGGTGAGCGGAGCTTGACCTTTTGGCCTCGG 887
||| |||||||||||||| |||||||||| | ||||||||||||||||||||||||| ||
Sbjct 853 ATTTGATGGGACTTGGGAGTGGGAGCTTT-GTTGAGCGGAGCTTGACCTTTTGGCCTGGG 911
Query 888 GTTCTAGGTAAGATGTATTCT-AACCTCTGTTTCTTCGTAATGGTGCTAGTGAACAGTCC 946
||| | || ||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 912 GTT--A--TA---TGTAT-CTTAACCTCTGTTTCTTCGTAATGGTGCTAGTGAACAGTCC 963
Query 947 ACGCATTTAGGCGCGGTGAGAAAAGTAGATGAACCTTATCGAGTAATGATGATCAAATCA 1006
||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||
Sbjct 964 ACGCATTTAGGCGCGGTGAGAAAAGTAAATCAACCTTATTGAGTAATGATGATCAAATCA 1023
Query 1007 TTCGTGTAATAAACCCAAGAATCAAATTGTGTAATGTGGCATTGCCCTTTTTAAA-CATA 1065
|||||||||||||||||||||||||||| |||||| ||||| ||||| ||||||| | ||
Sbjct 1024 TTCGTGTAATAAACCCAAGAATCAAATTTTGTAATATGGCAGTGCCCCTTTTAAAACTTA 1083
Query 1066 GATTCTGTTTTGCTTCTTGTTAGGCCTTCATATGTATATCTTT 1108
||||||||| ||||| ||||||| |||||||||||||||||||
Sbjct 1084 GATTCTGTTATGCTT-TTGTTAGACCTTCATATGTATATCTTT 1125
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54316989690
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5