BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480904
Length=630
Score E
Sequences producing significant alignments: (Bits) Value
AT2G20700.1 | Symbols: LLG2 | LORELEI-LIKE-GPI ANCHORED PROTEIN... 987 0.0
> AT2G20700.1 | Symbols: LLG2 | LORELEI-LIKE-GPI ANCHORED PROTEIN
2 | chr2:8924894-8925804 REVERSE LENGTH=691
Length=691
Score = 987 bits (534), Expect = 0.0
Identities = 602/634 (95%), Gaps = 8/634 (1%)
Strand=Plus/Plus
Query 1 aagaaaagagaagagaagagaagaagaaacagagaaaCAATGGAGAtttctccttactgt 60
|||| |||||||||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct 52 AAGAGAAGAGAAGAGAAGAGAGGAAGAATCAGAGAAACAATGGAGATTTCTCCTTACTGT 111
Query 61 ctgctttctcttcttcccattttcctcctctctggtttct-ccttctcATATGATGAATT 119
|||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 112 CTGCTTTCTCTTCTTCCCATTTTCCTCCTCTCTGGTTTCTCCCTT-TCATATGATGAATT 170
Query 120 TGATGGTCACGCAGCCACAAGCAGAGCTCTTCTTCAGACAAGGACAACGTGCAAAGAAGA 179
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 171 TGATGGTCACGCAGCAACAAGCAGAGCTCTTCTTCAGACAAGGACAACCTGCAAAGAAGA 230
Query 180 TTTCGCAAACAAGAACTACACAATCATAACAAGCAGATGTAAAGGACCAAATTATCCGGC 239
||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 231 TTTTGCTAACAAGAACTACACAATCATAACAAGCAGATGCAAAGGACCAAATTATCCGGC 290
Query 240 AAATGTGTGTTGCTCCGCCTTCAAGGACTTTGCTTGCCCTTTTGCAGAAGTTCTTAACGA 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 291 AAATGTGTGTTGCTCCGCCTTCAAGGACTTTGCTTGCCCTTTTGCAGAAGTTCTTAACGA 350
Query 300 CGAAAAGAACGATTGTGCCTCCACAATGTTCAGCTACATCAACCTTTACGGTCGTTATCC 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 351 CGAAAAGAACGATTGTGCCTCCACAATGTTCAGCTACATCAACCTTTACGGTCGTTATCC 410
Query 360 TCCTGGAATCTTTGCCAACATGTGTAAAGAAGGCAAAGAAGGTCTTGACTGCACTAATGT 419
|||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct 411 TCCTGGAATCTTTGCCAACATGTGTAAAGAGGGCAAAGAAGGTCTTGACTGCACTGATGT 470
Query 420 CACCCAGTCCGCATCTGCAACTTCTGATTCTAACCCCCGAGCCTCCGCAACTGCATCTCT 479
||||||||||||||| |||||||||||||||| ||| || |||||| |||||||||||||
Sbjct 471 CACCCAGTCCGCATCCGCAACTTCTGATTCTATCCCACGTGCCTCCACAACTGCATCTCT 530
Query 480 CGCGGTTCTTTCTACCTTCCTCGTTCTCTGTCTTTTGTTCTTGTC-TCCGTGAAGTCTTA 538
||||||||||||||||||||||||||| |||||||||||||| || || ||||||||||
Sbjct 531 CGCGGTTCTTTCTACCTTCCTCGTTCTGTGTCTTTTGTTCTTATCGTCT-TGAAGTCTTA 589
Query 539 ATAACACATCTCAGAACATGTTTTATGGATAAAGAACACATT-ATATATGCCTCTTGGTG 597
||||||||||||||||| |||||||||| |||| |||||||| ||||||||||||||||
Sbjct 590 ATAACACATCTCAGAACTTGTTTTATGGGTAAA-AACACATTTATATATGCCTCTTGGTC 648
Query 598 TTATGTCTTA-AACTCCTTTTCTTTTAAACTTCT 630
|||||| | | |||||| |||||| |||||||||
Sbjct 649 TTATGTAT-ACAACTCCCTTTCTTATAAACTTCT 681
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30391658935
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5