BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480906
Length=1654
Score E
Sequences producing significant alignments: (Bits) Value
AT2G20710.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 2582 0.0
> AT2G20710.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr2:8926033-8927844 FORWARD LENGTH=1672
Length=1672
Score = 2582 bits (1398), Expect = 0.0
Identities = 1570/1653 (95%), Gaps = 12/1653 (1%)
Strand=Plus/Plus
Query 6 TTAAACCCTAAACCTTAGGTTCTGTG-TTTGAAATCTGTATCATC-TTCAAAGTATGAAG 63
||||||| |||||||||| |||| || |||||||||||||||| | | ||||||||||
Sbjct 25 TTAAACCTTAAACCTTAGCTTCTCTGTTTTGAAATCTGTATCA-CGGCCCAAGTATGAAG 83
Query 64 CAtcttcttcttcttcttcGTCTTGTTCGTCCAAAGCCAAATTACATTCTCAGGAGGAGC 123
|| ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct 84 CA---TCTTCTTCTTCTTCGTCTTGTTCTTCCAAAGCCAAATTACATTCTCAGAAGGAGC 140
Query 124 TTCCTTTTTCACTCCGGCAAGACCACACCATCGCCGTTGGACCCTTACGACACTCTGCAG 183
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 141 TTCCTTTTCCACTCCGGCAAGACCACACCATCGCCGTTGGACCCTTACGACACTCTGCAG 200
Query 184 CGTCGAGTCGCGAGAGCTGGAGATCCCTCTGCTTCGATTATCAGAGTGTTGGATGGATGG 243
||||| ||||||||| | ||||||||||||||||||||||||| ||||||||||||||||
Sbjct 201 CGTCGGGTCGCGAGATCCGGAGATCCCTCTGCTTCGATTATCAAAGTGTTGGATGGATGG 260
Query 244 CTTGATCAAGGGCATCTGGTGAAGACTTCAGAGCTCCATGGCATCATCAAGATGCTTCGC 303
|||||||||||| ||||||| |||||||| ||||||||| |||||||||||||||||||
Sbjct 261 CTTGATCAAGGGAATCTGGTTAAGACTTCGGAGCTCCATAGCATCATCAAGATGCTTCGA 320
Query 304 AAGTTCAGCCGTTTCTCTCACGCCCTTCAGATATCAGATTGGATGAGTGAGCATAGAGTT 363
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 321 AAGTTCAGCCGTTTCTCTCACGCTCTCCAGATATCAGATTGGATGAGTGAGCATAGAGTT 380
Query 364 CATGAGATCACTGAAGGAGATGTTGCGATTCGGCTTGATTTGATTGCTAAAGTTGGTGGT 423
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 381 CATGAGATCTCTGAAGGAGATGTTGCGATTCGGCTTGATTTGATTGCTAAAGTTGGTGGT 440
Query 424 TTGGGAGAAGCAGAGAAGTTTTTCGAAACGATTCCTATGGAGAGGAGGAACTACCATCTC 483
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 441 TTGGGAGAAGCAGAGAAGTTTTTCGAAACTATTCCTATGGAGAGGAGGAACTACCATCTC 500
Query 484 TATGGGGCTCTCTTGAACTGCTATGCGAGCAAGAAGGTGTTGCATAAAGCTGAGCAAGTG 543
|| || |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 501 TACGGTGCTCTCTTGAACTGCTATGCGAGCAAGAAGGTGTTGCACAAAGCTGAGCAAGTG 560
Query 544 TTTCAGGAGATGAAAGAGCTTGGCTTCCTCAAAGGTTGTCTTCCCTACAATGTGATGCTG 603
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 561 TTTCAGGAGATGAAAGAGCTTGGCTTCCTTAAAGGTTGTCTTCCCTACAATGTGATGCTG 620
Query 604 AATCTCTACGTCCGGACTGGGAAATACACAATGGTTGAGAAGTTGCTGCGCGAAATGGAG 663
|||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 621 AATCTCTATGTCCGGACTGGGAAATACACAATGGTTGAGAAGCTGCTGCGCGAAATGGAG 680
Query 664 GATGGGACTGTGAAGCCCGATATCTTCACAGTGAACACGCGGCTCCATGCTTATTCGGCT 723
|||| |||||||||||| || ||||||||||||||||||||| | ||||||||||||| |
Sbjct 681 GATGAGACTGTGAAGCCAGACATCTTCACAGTGAACACGCGGTTGCATGCTTATTCGGTT 740
Query 724 GTATCTGATGTAGAGGGGATGGAGAAGTTTCTGATGCGTTGTGAGGCTGACCCGGGACTT 783
|||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |||
Sbjct 741 GTATCTGATGTAGAGGGGATGGAGAAGTTTCTTATGCGTTGTGAGGCTGACCAGGGGCTT 800
Query 784 CATTTGGACTGGCGCACTTACGCTGATACAGCGAATGGCTACATAAAGGCTGGATTAACT 843
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 801 CATTTGGACTGGCGCACTTACGCCGATACAGCGAATGGCTACATAAAGGCTGGATTAACT 860
Query 844 GAAAAGGCGATAGAGATGCTGCGTAAATCAGAGCAGATGGTGAATCCTCAGAAAAGAAAG 903
|||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 861 GAAAAGGCTCTAGAGATGCTGCGTAAATCAGAGCAGATGGTGAATGCTCAGAAAAGAAAG 920
Query 904 CATGCCTATGAGGTTCTCATGTCATTCTATGGAGCTGCAGGTAAGAAAGAAGAGGTGTAC 963
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 921 CATGCCTATGAGGTTCTCATGTCATTCTATGGAGCTGCAGGTAAGAAAGAAGAGGTGTAC 980
Query 964 CGTCTCTGGAGCTTGTACAAGGAGCTGGACGGGTTCTACAACACGGGATACATAAGCGTG 1023
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 981 CGTCTCTGGAGCTTGTACAAGGAGCTGGACGGGTTCTACAACACTGGATACATAAGCGTG 1040
Query 1024 ATCAGTGCACTCTTGAAGATGGATGACATCGATGAGGTTGAGAAGATTATGGAAGAGTGG 1083
||||||||||||||||||||||||||||| || ||||| ||||| |||||||||||||||
Sbjct 1041 ATCAGTGCACTCTTGAAGATGGATGACATAGAGGAGGTGGAGAAAATTATGGAAGAGTGG 1100
Query 1084 GAAGCTGGACACTCCCTTTTCGATATCCGGATCCCACACTTGTTAATAACGGGGTACTGC 1143
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 1101 GAAGCTGGACACTCCCTTTTCGATATTCGGATCCCACACTTGTTAATAACGGGTTACTGC 1160
Query 1144 AAGAAGGGGATGATGGAAAAGGCAGAGGAAGTAGCAAAGATATTGGTCCAGAAGTGGAGA 1203
||||| || |||||||| |||||||||||||||| ||| |||||||||||||||||||||
Sbjct 1161 AAGAAAGGAATGATGGAGAAGGCAGAGGAAGTAGTAAATATATTGGTCCAGAAGTGGAGA 1220
Query 1204 GTGGAGGATACAAGCACATGGGAGCGTTTAGCTCTCGGGTACAAGATGGCGGGTGAAATG 1263
||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||
Sbjct 1221 GTGGAGGATACAAGCACATGGGAGCGTTTAGCTCTTGGGTACAAGATGGCGGGTAAAATG 1280
Query 1264 GAGAGGGCGGTGGAGAAATGGAAGAGAGCAATAGAGGTGAGCAAGCCAGGGTGGAGACCA 1323
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1281 GAGAAGGCGGTGGAGAAATGGAAGAGAGCAATAGAGGTGAGCAAGCCAGGGTGGAGACCA 1340
Query 1324 CACCAGGTTGTGCTGATGAGCTGTGTGGACTATCTGGAGGGTCAAAGAGACATGGAGAGT 1383
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 1341 CACCAGGTTGTGCTGATGAGCTGTGTGGATTATCTGGAGGGTCAAAGAGACATGGAGGGT 1400
Query 1384 TTGAGAAAGATTTTGAGACTGTTAAGCGAGCGAGGACACATATCATACGATCAGCTACTG 1443
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1401 TTGAGAAAGATTTTGAGACTGTTAAGCGAGCGAGGACACATTTCATACGATCAGCTACTG 1460
Query 1444 TACGATATGAACGGAGCTGGACTGAGTTGGAAGATAGTCGATGCAATGGGAAAAGGTCGA 1503
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1461 TACGACATGAACGGTGCTGGACTGAGTTGGAAGATAGTCGATGCAATGGGAAAAGGTCGA 1520
Query 1504 TACGTTGAGGAAGGAGAAGTAAGAATCTAGACAGTGACACTTTCCAAACAATGAAGTCTT 1563
|||||||||||| |||||||| ||||||||| |||||||| |||||||||||||||||||
Sbjct 1521 TACGTTGAGGAAAGAGAAGTACGAATCTAGAAAGTGACACATTCCAAACAATGAAGTCTT 1580
Query 1564 GAGA-CCATTTGGCTAAATGCAATTTCGTTTCA-CCTACTAGCATTTTTTGGGTTTAAAC 1621
| | |||||||| ||||||||| ||||||||| || || ||||||||||||| |||| |
Sbjct 1581 -ATAACCATTTGGATAAATGCAAGTTCGTTTCATCC-ACAAGCATTTTTTGGGCTTAAGC 1638
Query 1622 TTGTCTTAAGAATGAGTTAACTAATAATAGATT 1654
||||||||| | |||||||||||||||||||||
Sbjct 1639 TTGTCTTAA-A-TGAGTTAACTAATAATAGATT 1669
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81726487260
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5