BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480909
Length=978
Score E
Sequences producing significant alignments: (Bits) Value
AT2G20740.1 | Symbols: | Tetraspanin family protein | chr2:893... 1363 0.0
> AT2G20740.1 | Symbols: | Tetraspanin family protein | chr2:8935607-8937512
FORWARD LENGTH=1067
Length=1067
Score = 1363 bits (738), Expect = 0.0
Identities = 830/873 (95%), Gaps = 12/873 (1%)
Strand=Plus/Plus
Query 24 TCTTTTTCGATTTCTCTTCCTCCTAGACCCAACCGACGAAGAGAATTTGATTTGTTGTTG 83
||||| ||||||||||||| ||||||||||||| ||||||||||||||| |||||| |
Sbjct 82 TCTTTATCGATTTCTCTTCTTCCTAGACCCAACAGACGAAGAGAATTTG--TTGTTG--G 137
Query 84 ATTGTGTCTGGTCTCTTCGTCTAGG--GTTTTTGGGTGATTAAAGATGGTGAGGATCGTG 141
|||| ||||||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct 138 -TTGTCTCTGGTCTCTTCGTCTAGGTTTTTTTTGGGTTATTAAAGATGGTGAGGATCGTG 196
Query 142 AGAAGTTGTTTACAGTCCATGTTAAAGCTCGTGAATTCTCTAATTGGGATGGTTGGGATT 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 197 AGAAGTTGTTTACAGTCCATGTTAAAGCTCGTGAATTCTCTAATTGGGATGGTTGGGATT 256
Query 202 GCTATGATTCTCTACGCTGTTTGGCTGATTAGGCAATGGCAAGAACAAATGGGAAATCTT 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 257 GCTATGATTCTCTACGCTGTTTGGCTGATTAGGCAATGGCAAGAACAAATGGGAAATCTT 316
Query 262 CCATTTGCTGATTCTGATCACCCTGTTCCATGGTTCATTTATTCATTTCTCGGTCTCGGG 321
|| |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 317 CCTTTTGCTGATTCTGATCACCCTGTTCCGTGGTTCATTTATTCATTTCTTGGTCTCGGG 376
Query 322 GCCATTCTCTGTGTTGTCACTTGCGCCGGGCACATAGCTGCTGAAACCGTGAATGGATGT 381
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 377 GCCATTCTCTGTGTTGTCACTTGTGCCGGGCACATAGCTGCTGAAACCGTGAATGGATGT 436
Query 382 TGCCTTTACTTGTATATGGGATTCATTGTCTTGCTAGTTATGGTTGAAGGCGGTGTGGTT 441
|||||||||||||||||||||||||| ||||||||| |||||||||||||||||| |||
Sbjct 437 TGCCTTTACTTGTATATGGGATTCATAGTCTTGCTAACTATGGTTGAAGGCGGTGTAGTT 496
Query 442 GCCGATATCTTTCTAAATCGTGACTGGAAAAAGGACTTTCCAGAGGATCCAAGTGGTGCT 501
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 497 GCCGATATCTTTCTAAACCGTGACTGGAAAAAGGACTTTCCAGAGGATCCAAGTGGTGCT 556
Query 502 TTCCACCAGTTCTCTAAGTTCATCAAGTCAAACTTCAAGATTTGCAAGTGGCTAGGTCTC 561
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 557 TTCCACCAGTTCTCTAAGTTCATCGAGTCAAACTTCAAGATTTGCAAGTGGATAGGTCTC 616
Query 562 TCTATTGTCTGTGTCCAGGGTCTATCAGTTTTATTAGCCATGTTGCTCAAAGCTCTTGGA 621
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 617 TCTATTGTCTGTGTCCAGGGTCTATCAGTTTTAATAGCCATGTTGCTCAAAGCTCTTGGA 676
Query 622 CCTCACCCTTACCGTCATTATGACAGTGACGATGAATACAATGTAAGCACAGTTGCACTC 681
||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 677 CCTCACCCTCACCGACATTATGATAGTGACGATGAATACAATGTAAGCACAGTTGCACTC 736
Query 682 CTGCAGGATGGTCGTCAGCCGCCTCCATACGTTGTTGGAGAACCCATGTATGGAGCCAAA 741
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 737 CTGCAGGATGCTCGTCAGCCGCCTCCATACGTTGTTGGAGAACCCATGTATGGAGCCAAA 796
Query 742 TCGGGAGCTTGGGCAGTTAGGATTAATGAAAGGGCGAACCGATGAGAGGTGCAAACCAAG 801
||||||||||| ||||||| |||||||||||||| ||||| ||||||||| |||| |||
Sbjct 797 CCGGGAGCTTGGACAGTTAG-ATTAATGAAAGGGCAAACCGGTGAGAGGTGAAAACAAAG 855
Query 802 AAACTCGTAGAAGAAAAATGGCAAAG-AG--TCTGCTATTTCCATGTGTGCATTTACATT 858
||||||||||||||||| |||||||| || |||||| ||||||||||||||||||| ||
Sbjct 856 AAACTCGTAGAAGAAAA-TGGCAAAGCAGAGTCTGCTCTTTCCATGTGTGCATTTACTTT 914
Query 859 GGCTTCTTGTTGCATCTCTTTCTTTCACTATTT 891
|||||||| ||||||||||||||||||||||||
Sbjct 915 GGCTTCTTATTGCATCTCTTTCTTTCACTATTT 947
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47873142091
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5