BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480911
Length=1132
Score E
Sequences producing significant alignments: (Bits) Value
AT2G20750.1 | Symbols: ATEXPB1, EXPB1, ATHEXP BETA 1.5 | expans... 1546 0.0
> AT2G20750.1 | Symbols: ATEXPB1, EXPB1, ATHEXP BETA 1.5 | expansin
B1 | chr2:8941119-8942689 FORWARD LENGTH=1141
Length=1141
Score = 1546 bits (837), Expect = 0.0
Identities = 1025/1114 (92%), Gaps = 20/1114 (2%)
Strand=Plus/Plus
Query 25 gttttttt-ttGGCTTGTCTCTCCGGTCAAAATGCAGCTCTTTCCGGTCATCCTACCGAC 83
|||||||| |||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct 36 GTTTTTTTGTTGGCTAGTCTCTTCGGTCAAAATGCAGCTCTTTCCGGTCATCCTACCGAC 95
Query 84 ACTATGCGTCTTCTTCCACCTTCTAAGAGGCGGCTCTGGCTCTACTCCATCGTTGACTCA 143
||||||||||||| |||||||||||| | | |||||||||||||||||| ||||||||||
Sbjct 96 ACTATGCGTCTTCCTCCACCTTCTAATAAGTGGCTCTGGCTCTACTCCACCGTTGACTCA 155
Query 144 CTCCAGTCAACAAGTGGCAGTCACCCGTTGGCTTCCCGCAACTGCCACCTGGTACGGAAG 203
||||| |||||||||||||| ||| |||||||||||||| || || ||||||||||||||
Sbjct 156 CTCCAATCAACAAGTGGCAGCCACTCGTTGGCTTCCCGCCACCGCAACCTGGTACGGAAG 215
Query 204 TCCCGAGGGCGACGGCAGCAGTGGAGGAGCTTGTGGTTACGGGTCACTAGTGGACGTGAA 263
| ||||||| ||||||||||| |||||||||||||||||||| || | |||||||||||
Sbjct 216 TGCCGAGGGAGACGGCAGCAGCGGAGGAGCTTGTGGTTACGGATCGTTGGTGGACGTGAA 275
Query 264 GCCGTTTAAGGCAAGAGTTGGAGCGGTGAGTCCGATTCTGTTCAAGGGTGGTGAAGGCTG 323
|||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 276 GCCGTTTAAGGCTAGAGTCGGAGCGGTGAGTCCGATTCTGTTCAAAGGTGGTGAAGGCTG 335
Query 324 TGGTGCATGTTACAAGGTCAGGTGTCTCGACAAGACCATTTGCTCTAAGAGAGCAGTCAC 383
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 336 CGGTGCATGCTACAAGGTCAGGTGTCTCGACAAGACCATTTGCTCTAAGAGAGCAGTCAC 395
Query 384 CATTATTGTCACCGACCAGTCACCGTCAGGACCATCTGCTAAAGCAAACCACACTCACTT 443
|||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 396 CATTATTGCCACCGACCAGTCACCGTCAGGACCATCTGCTAAAGCAAAACACACTCATTT 455
Query 444 CGACCTTAGCGGTGCCGCCTTTGGACATATGGCTATTCCCGGCCATAACGGTGTCATCCG 503
|||||| || || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 456 CGACCTCAGTGGCGCCGCCTTTGGACATATGGCTATTCCCGGCCATAACGGTGTCATCCG 515
Query 504 CAACCGTGGCCTATTAAACATCCTCTACGGCCGAACGGCATGCAAATACAAAGGGAAGAA 563
|||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct 516 CAACCGTGGCCTATTAAACATCCTCTACCGCCGAACGGCATGCAAATACAGAGGGAAGAA 575
Query 564 CATAGCCTTCCATGTGAATGCAGGATCAACAGATTATTGGTTATCTCTTCTCATTGAGTA 623
|||||| || |||||||| ||||||||||| |||||||||||||| ||||||||||||||
Sbjct 576 CATAGCGTTTCATGTGAACGCAGGATCAACTGATTATTGGTTATCGCTTCTCATTGAGTA 635
Query 624 TGAAGACGGTGAAGGAGACATTGGCTCTATGCACATTCGTCAAGCGGGGTCTAAGGAGTG 683
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 636 TGAAGACGGTGAAGGAGACATTGGCTCTATGCACATTCGTCAAGCGGGATCTAAGGAGTG 695
Query 684 GATAGCAATGAAGCACATATGGGGAGCAAACTGGTGCATTGTCGAAGGACCACTCAAGGG 743
|||| | |||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 696 GATATCGATGAAGCACATATGGGGAGCGAACTGGTGCATCGTCGAAGGACCACTCAAGGG 755
Query 744 ACCATTCTCTGTGAAGCTTACAACTTTGTCCAACAACAAGACACTCTCTGCCGCCGACGT 803
||||||||| |||||||| ||||||||||||||||| ||||||||||| ||| |||||||
Sbjct 756 ACCATTCTCCGTGAAGCTCACAACTTTGTCCAACAATAAGACACTCTCCGCCACCGACGT 815
Query 804 CATCCCCAGTAACTGGGTTCCCAAAGCTACTTACACCTCCCGCCTCAACTTCTCCCCTGT 863
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 816 CATCCCCAGTAACTGGGTTCCCAAAGCTACTTACACCTCTCGCCTCAACTTCTCCCCTGT 875
Query 864 TCTCTAATTAACCACTCTTCGttttt-ttttGTTGTGGGAGAGAGTAACACAGAGAGGAC 922
|||||||||| || |||||| |||||||||||||||||| |||||||||| |||
Sbjct 876 TCTCTAATTAGCCTCTCTTCAAAAAAATTTTGTTGTGGGAGAGAGGAACACAGAGAAGAC 935
Query 923 AATGAGTGAGCCATCTCCAAAGTTAGGGGAAGAAGAGCTTG-CAATGTGTGTGTGACTAC 981
|||||||||||||||||||||||||||||| |||||||| || |||||||||||||||
Sbjct 936 AATGAGTGAGCCATCTCCAAAGTTAGGGGATTAAGAGCTTTTCATTGTGTGTGTGACTAC 995
Query 982 TAACTTTTTATGTTGTCCATTTTCAttttttttCCTTGTCCATAGGGATGTGTGTATCAA 1041
|||| || |||||||||| ||||||||||||| |||| |||||||||||||||||||||
Sbjct 996 TAACATTCTATGTTGTCCCTTTTCATTTTTTT-CCTTCTCCATAGGGATGTGTGTATCA- 1053
Query 1042 TCATCTATAATCTTGTTTGTGGGACATTACTATATATAAGAAGAGAATTTACAAAAGATG 1101
|| | ||||| |||||||||||||||||||||||| | ||| |||||||||||||
Sbjct 1054 TC-T--ATAATGTTGTTTGTGGGACATTACTATATA-A-GAA-----TTTACAAAAGATG 1103
Query 1102 TAATAATGTGCA-A---AATCTCATTCCTTTTTT 1131
||||||||| | | |||||||||||||||||
Sbjct 1104 TAATAATGTA-ATATGCAATCTCATTCCTTTTTT 1136
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55521802770
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5