BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480913
Length=1481
Score E
Sequences producing significant alignments: (Bits) Value
AT2G20770.1 | Symbols: GCL2 | GCR2-like 2 | chr2:8945318-894731... 2230 0.0
> AT2G20770.1 | Symbols: GCL2 | GCR2-like 2 | chr2:8945318-8947310
FORWARD LENGTH=1549
Length=1549
Score = 2230 bits (1207), Expect = 0.0
Identities = 1365/1440 (95%), Gaps = 16/1440 (1%)
Strand=Plus/Plus
Query 19 GAAAGAGACAACAATGGCGGATCGGTTCTTCGATAACGTGATGCCTGATTTCGTGAAGGA 78
||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 50 GAAAGAGACGACAATGGCGGGTCGGTTCTTCGATAACGTGATGCCTGATTTCGTGAAGGA 109
Query 79 GAAGGAAAGTGAATCTGGAGGAGATTCGCTTAGGAATCTGCTCGCTATGCCGTATTCGTC 138
||||||||||| ||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct 110 GAAGGAAAGTGTATCTGGAGGAGATACGCTTAGGAATCTGCTTGCTATGCCGTATTCGTC 169
Query 139 TCTCTCGCAGCAGCTCAAACGATCCGCTTTGGATCTCAAGGAAACTGTAGTGATGGAAAC 198
|||||||||||||||||| || ||||||||||||||||| ||||| |||||||| |||||
Sbjct 170 TCTCTCGCAGCAGCTCAAGCGGTCCGCTTTGGATCTCAAAGAAACCGTAGTGATTGAAAC 229
Query 199 TTGGGGTTTTAGTGGGCAGACTGTTGAAGACTTCAGTCTTTACTCTGGAACTCTTGGAGC 258
||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 230 TTGGGGTTTTAGTGGACAGACTGTTGAAGACTTCACTCTTTACTCTGGAACTCTTGGAGC 289
Query 259 TGCGTTTTTACTCTTTAGAGCTTATCAGGTTACTGGAAACGCCAATGATCTTTCCCTTTG 318
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||
Sbjct 290 TGCGTTTTTACTCTTTAGAGCTTATCAGGTTACTGGCAACGCCAACGATCTTTCCCTCTG 349
Query 319 CTTGGAAATCGTCAAAGCTTGTGATGCTGCTTCTGCTTCCTCAGGGGATGTTACTTTTCT 378
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 350 CTTGGAAATCGTCAAAGCTTGTGATACTGCTTCTGCTTCCTCAGGGGATGTTACTTTTCT 409
Query 379 CTGTGGCCGAGCTGGTGTTTGTGGTCTTGGCGCCGCTGCAGCTAAGCTTTCTGGTGAGGA 438
||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 410 CTGTGGCCGAGCTGGTGTTTGTGGTCTTGGCGCTGTTGCAGCTAAGCTTTCTGGTGAGGA 469
Query 439 GGAGTTGCTCAATTACTATTTGGCG-CAATTTCGTCTGATAAGACTATCTAGTGATCTTC 497
|| ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 470 AGATTTGCTCAATTACTATTTGG-GACAATTTCGTCTGATAAGACTATCTAGTGATCTTC 528
Query 498 CTAACGAGCTTTTGTATGGAAGAGTTGGTTATCTATGGGCTTGTTTGTTCATCAACAAGT 557
|||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct 529 CTAACGAGCTTTTGTATGGAAGAGTTGGTTATCTATGGGCTTGTCTGTTTATCAACAAGT 588
Query 558 ACATTGGCAAAGAAACTTTGTCTTCAGATACCATTCGCGAAGTTGCTCAGGAGATTATCA 617
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 589 ACATCGGCAAAGAAACTTTGTCTTCAGATACCATCCGCGAAGTTGCTCAGGAGATTATCA 648
Query 618 AGGACGGAAGATCAATGGCTAAGAAAGGAAGCTCACCGCTTATGTTTGAATGGTATGGCA 677
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 649 AGGAAGGAAGATCAATGGCTAAGAAAGGAAGCTCACCGCTTATGTTTGAATGGTATGGCA 708
Query 678 AACGGTACTGGGGTGCAGCACATGGGCTTGCTGGTATTATGCACGTATTGATGGATGTTC 737
|| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 709 AAAGGTACTGGGGTGCAGCACATGGACTTGCTGGTATTATGCACGTATTGATGGATGTTC 768
Query 738 AGCTGAAGCCTGACGAGGCAGAGGATGTGAAGGGAACCCTTAAGTATATGATCAAGAATC 797
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 769 AGCTGAAGCCTGACGAGGCAGAAGATGTGAAGGGAACCCTTAAGTATATGATCAAGAATC 828
Query 798 GGTTTCCAAGTGGAAATTACCCTGCTAGTGAAGAGGATAGGAAGAAAGATGTCCTTGTGC 857
||||||||||||||||||||||||||||||||||||||| |||||||||| | |||||||
Sbjct 829 GGTTTCCAAGTGGAAATTACCCTGCTAGTGAAGAGGATAAGAAGAAAGATATTCTTGTGC 888
Query 858 ATTGGTGTCATGGAGCTCCTGGGATTGCTCTCACACTTGTGAAAGCTGCTGAGGTTTTTG 917
|||||||||||||||| ||||||||||| |||||||||| ||| || |||||||||||||
Sbjct 889 ATTGGTGTCATGGAGCCCCTGGGATTGCCCTCACACTTGGGAAGGCGGCTGAGGTTTTTG 948
Query 918 GGGAGAGAGAGTTTCTGGAAGCGGGTGCAGCTGCAGCAGAGGTGGTTTGGAACCGTGGAT 977
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 949 GGGAGAGAGAGTTTCTGGAAGCGAGTGCAGCTGCAGCAGAGGTGGTTTGGAACCGTGGAT 1008
Query 978 TGCTCAAGCGGGTGGGGATCTGTCATGGAATAAGTGGGAATGCATATGTTTTTCTCT-CG 1036
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||| | ||
Sbjct 1009 TGCTCAAGCGCGTGGGGATCTGTCATGGAATAAGTGGGAACGCATATGTTTTTCT-TGCG 1067
Query 1037 CTTTACAGAGCTACGGGAATGAGTGAGTATCTGTACCGTGCAAAAGCCTTTGCCAGTTTT 1096
||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct 1068 CTTTACAGAGCTACGGGAAGGAGTGAGTATCTATACCGTGCAAAAGCCTTTGCCAGTTTC 1127
Query 1097 CTGCTTGATAGAGGCCCCAAGTTACTCTCAAAAGGAGAAATGCATGGAGGTGATAGTCCT 1156
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1128 CTGCTTGATAGAGGCCCCAAGTTACTCTCAAAAGGAGAAATGCATGGAGGTGATAGTCCT 1187
Query 1157 TATTCCTTGTTTGAAGGCTTTGCAGGCATGGCCTATCTCTACCTTGACATGTTCGACCCA 1216
|||||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||
Sbjct 1188 TATTCCTTGTTTGAAGGCGTTGCAGGCATGGCCTATCTCTTCCTTGACATGGTCGACCCA 1247
Query 1217 TCTCAAGCCAGGTTCCCAGGTTACGAGCTTTAAACTTCTAGATCGATAACAATCTCCATA 1276
||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1248 TCTGAAGCCAGGTTCCCAGGTTACGAGCTTTAAACTTCTTGATCGATAACAATCTCC--- 1304
Query 1277 CTTTTGTCCATCAAATCCTTATCTCTTGTTATGGAGGAGGCACAAGGTAAGAGAGGgtgt 1336
||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 1305 -----GTCCATCAAATCCTTCTCTCTTGTTATGGAGGATGCACAAGGTAAGAGAGGGTGT 1359
Query 1337 gtgtatgtgtgtgtTTACTACTAGCAAAATCTTGTTGTTGTTGTTTGATGGTGAATCAGT 1396
| || | |||||||||| ||||||||||||||| |||||||| | |||||||||| |||
Sbjct 1360 GAGTGTATGTGTGTTTAGTACTAGCAAAATCTTCTTGTTGTT-T--GATGGTGAATAAGT 1416
Query 1397 TTGAGTTGATATCTATTGGAACTGTCCGGAGAGCCTGTAACTTTATGA-TGTTAGAAGGA 1455
|||||||||||| || |||||||||||||||||||||||||||||| |||||||||||
Sbjct 1417 TTGAGTTGATATATAGCCGAACTGTCCGGAGAGCCTGTAACTTTATGAGTGTTAGAAGGA 1476
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73041792975
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5