BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480914
Length=1995
Score E
Sequences producing significant alignments: (Bits) Value
AT2G20780.1 | Symbols: | Major facilitator superfamily protein... 3059 0.0
> AT2G20780.1 | Symbols: | Major facilitator superfamily protein
| chr2:8947242-8949413 REVERSE LENGTH=2078
Length=2078
Score = 3059 bits (1656), Expect = 0.0
Identities = 1911/2029 (94%), Gaps = 37/2029 (2%)
Strand=Plus/Plus
Query 1 TTGGATTACCTCATTAGAAAATT-CACCAATTTGGTCAAATAGAGACGATGAAATTTTTA 59
||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| ||
Sbjct 39 TTGGATTACCTCATTAGAAAATTCCACCAATTTGGTCAAATAGAGACGATGAGATTTCTA 98
Query 60 ACAAGTCTCTCCGGTTCAGATCTAATCATCTAAAGCCCTTCTTCCGAGATCTACGACTTT 119
| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 99 AGAAGTCTCTCCGGTTCAGATCTGGTCATCTAAAGCCCTTCTTCCGAGATCTACGACTTT 158
Query 120 ACTT-CTCAAGTCGTTGTCTGAATTCTC--TCTTTCCGAAAACGGACACCACCTGAGTCT 176
||| ||||||||||||||||||||||| | ||||||||||| ||||||||||||||||
Sbjct 159 -CTTCCTCAAGTCGTTGTCTGAATTCTCTTTTTTTCCGAAAACAGACACCACCTGAGTCT 217
Query 177 GCTGTCTGAAGCCTCGGCGGAGGGAGATGAT---GAATCTGCCGGAGGTTGGAAATGGCG 233
||||||||||||||||||||||||||||||| |||||| ||||||||||| |||||||
Sbjct 218 GCTGTCTGAAGCCTCGGCGGAGGGAGATGATGAAGAATCTTCCGGAGGTTGGTAATGGCG 277
Query 234 GTGGCTCTGGTTTTCCGGCGGTCTCTGTCGGAAATAAGAAGAATAAGTATCAGAGAATGG 293
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 278 GTGGCTCGGGTTTTCCGGCGGTCTCTGTCGGAAATAAGAAGAATAAGTATCAGAGAATGG 337
Query 294 ACTCCGACGCGGA-GAAT--C---ATC-T--TGAAGCAGAGGCTAGAAACAGTAGAACTA 344
||||||||||||| |||| | ||| | ||||||||||||||||||||||||||| |
Sbjct 338 ACTCCGACGCGGAGGAATCGCAGAATCATCGTGAAGCAGAGGCTAGAAACAGTAGAACCA 397
Query 345 GGAAATACGTTATGGCTTGTGCtttttttGCATCGTTGAACAATGTTCTTCTCGGCTACG 404
| |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 398 GAAAATACGTTATGGCTTGTGCCTTTTTTGCATCCTTGAACAATGTTCTTCTCGGCTACG 457
Query 405 ATGTTGGGGTAATGAGCGGTGCGGTGTTGTTCATACAGCAGGATCTCAATATAACGGAGG 464
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 458 ATGTTGGGGTAATGAGCGGTGCGGTGTTGTTCATACAGCAGGATCTCAAAATAACGGAGG 517
Query 465 TGCAGACGGAAGTTCTCATTGGTAGCCTCAGCATTATTTCACTCTTCGGCAGCTTAGCCG 524
||||||||||||| |||||||||||||| ||||| || |||||||| |||||||||||||
Sbjct 518 TGCAGACGGAAGTGCTCATTGGTAGCCTTAGCATCATCTCACTCTTTGGCAGCTTAGCCG 577
Query 525 GCGGCAGAACCTCTGACTCCATCGGTAGAAAATGGACCATGGCCTTGGCTGCTCTCGTCT 584
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 578 GCGGCAGAACCTCTGACTCTATCGGTAGAAAATGGACCATGGCCTTGGCTGCTCTCGTCT 637
Query 585 TTCAGACTGGTGCTGCGGTGATGGCTGTCGCTCCGTCTTTCGAGGTTTTGATGATCGGAA 644
| |||||||||||||| |||||||||||||||||||||||||||||||||||||| || |
Sbjct 638 TCCAGACTGGTGCTGCCGTGATGGCTGTCGCTCCGTCTTTCGAGGTTTTGATGATAGGGA 697
Query 645 GAACTTTAGCCGGCATTGGGATTGGACTTGGTGTCATGATCGCGCCTGTCTACATCGCCG 704
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 698 GAACTTTAGCCGGCATTGGGATTGGGCTTGGTGTCATGATCGCTCCTGTCTACATCGCCG 757
Query 705 AGATATCCCCTACTGTAGCCAGAGGATTTTTCACTTCGTTCCCTGAGATCTTCATAAATC 764
|||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 758 AGATATCCCCCACCGTAGCTAGAGGATTTTTCACTTCGTTCCCTGAGATCTTCATAAATC 817
Query 765 TAGGGATCTTGCTAGGCTATGTTTCGAACTACGCTTTCTCGGGGCTTTCCGTGCATATCA 824
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 818 TAGGGATCTTGCTGGGCTATGTTTCGAACTACGCTTTCTCGGGGCTTTCCGTGCATATCA 877
Query 825 GCTGGAGGATCATGCTTGCAGTTGGGATTCTTCCTTCGGTGTTCATAGGATTTGCGCTGT 884
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 878 GCTGGAGGATCATGCTTGCAGTTGGGATTCTTCCTTCGGTGTTCATAGGATTTGCGCTGT 937
Query 885 GTGTGATCCCTGAGTCGCCGAGGTGGCTGGTGATGAAAGGCCGAGTGGACAGTGCACGAG 944
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 938 GTGTGATCCCTGAGTCGCCGAGGTGGCTGGTGATGAAAGGCCGAGTGGACAGTGCACGAG 997
Query 945 AGGTGCTTATGAAAACGAATGAGCGAGATGATGAAGTAGAAGAGCGGCTTGCAGAGATAC 1004
||||||| ||||||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct 998 AGGTGCTCATGAAAACGAATGAGCGAGATGACGAAGCGGAAGAGCGGCTTGCAGAGATAC 1057
Query 1005 AACTGGCGGCTGCACATACAGAAGGCAGCGAGGAGAGACCGGTGTGGCGTGAGCTTCTAA 1064
|||||||||||||||||||||||||||||||||| || || ||||||||||||||||| |
Sbjct 1058 AACTGGCGGCTGCACATACAGAAGGCAGCGAGGACAGGCCCGTGTGGCGTGAGCTTCTTA 1117
Query 1065 GCCCATCTCCTGTTGTACGGAAAATGCTGATTGTTGGATTTGGGATCCAATGTTTCCAGC 1124
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 1118 GCCCATCTCCTGTTGTACGGAAAATGCTGATTGTTGGATTTGGAATCCAGTGTTTCCAGC 1177
Query 1125 AGATCACAGGAATCGACGCCACAGTCTACTATAGTCCAGAGATCCTGAAAGAGGCTGGGA 1184
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1178 AGATCACAGGAATTGACGCCACAGTCTACTATAGTCCAGAGATCCTGAAAGAGGCTGGGA 1237
Query 1185 TACAAGACGAGACCAAACTGCTCGCTGCAACTGTCGCTGTTGGGGTCACGAAAACAGTGT 1244
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1238 TACAAGACGAGACCAAACTGCTCGCTGCAACTGTCGCTGTTGGTGTCACGAAAACAGTGT 1297
Query 1245 TCATACTATTTGCCACCTTCCTGATCGATAGCGTTGGCCGGAAACCGCTGCTTTATGTGA 1304
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 1298 TCATACTATTTGCCACCTTCCTGATTGATAGTGTTGGCCGGAAACCGCTGCTTTATGTGA 1357
Query 1305 GCACAATTGGAATGACTCTGTGTCTCTTTTGTCTAAGCTTCACGCTCACATTCCTCGGCC 1364
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1358 GCACAATAGGAATGACTCTGTGTCTCTTTTGTCTAAGCTTTACGCTCACATTCCTCGGCC 1417
Query 1365 AAGGAACGCTTGGGATAACCTTGGCTCTTCTCTTTGTTTGTGGGAATGTAGCTTTCTTCT 1424
||||||||||||||||||||||||| ||||||||||||||||| || || || |||||||
Sbjct 1418 AAGGAACGCTTGGGATAACCTTGGCGCTTCTCTTTGTTTGTGGAAACGTTGCCTTCTTCT 1477
Query 1425 CTATAGGGATGGGACCTGTTTGCTGGGTCTTGACGTCAGAGATCTTCCCATTACGGCTAA 1484
| ||||| |||||||||||||||||||||||||| ||||||||||| |||||||| |||
Sbjct 1478 CCATAGGAATGGGACCTGTTTGCTGGGTCTTGACATCAGAGATCTTTCCATTACGATTAA 1537
Query 1485 GAGCCCAGGCCTCAGCGCTTGGGGCGGTCGGAAACAGGGTGTGCAGCGGTCTGGTGGCCA 1544
|||||||||| || |||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 1538 GAGCCCAGGCATCTGCGCTTGGGGCGGTTGGGAACAGGGTGTGCAGCGGTCTGGTGGCCA 1597
Query 1545 TGTCCTTCCTCTCTGTCTCACGTGCCATTACTGTTGGAGGAACCTTCTTCGTTTTCTCCC 1604
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1598 TGTCCTTCCTCTCTGTGTCACGTGCCATCACTGTTGGAGGAACCTTCTTCGTTTTCTCCC 1657
Query 1605 TCGTGTCTGCACTCTCGGTTATCTTCGTGTATGTGCTAGTCCCCGAGACAAGCGGGAAGT 1664
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1658 TCGTGTCTGCACTCTCAGTTATCTTCGTGTATGTGCTAGTCCCCGAGACAAGCGGGAAGT 1717
Query 1665 CGCTGGAGCAGATAGAGTTGATGTTTCAGGGTGGGCTGGAAAGAAAAGACGGTGAAGTTG 1724
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1718 CACTGGAGCAGATAGAGTTGATGTTTCAGGGTGGGCTGGAAAGAAAAGACGGTGAAGTTG 1777
Query 1725 AGCTTGGAGATGCTGAGCGTCTTGTGCGCAAGGAACAGGAGTTTTGAAATTGAACATGTT 1784
|||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 1778 AGCTTGGAGATGCTGAGCGTCTTGTGCGCAAGGAACAGGAGTTTTGAA-TTGATCATGTT 1836
Query 1785 AAAGTAGAAGAGGCAGAAG--A---GA-A-T-----GGTGTTCTGTTCTTGTTTTAGATC 1832
||||||||||||||||||| | || | | ||||||||||||||| |||||||
Sbjct 1837 AAAGTAGAAGAGGCAGAAGTGAAAAGATACTCTTATGGTGTTCTGTTCTTGCATTAGATC 1896
Query 1833 CAAAGAACGTAAGACAGATTTTGTAAGTGCGTTTGATGATCGTATAGACCCAATGCATAT 1892
|||||||||||||| ||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 1897 CAAAGAACGTAAGATAGATTTTGTAAGTGCGTTTGATGATGGTATAGACCCAGTGCATAT 1956
Query 1893 TCCAAAGAAGGCAAATGCTCTGTTTTTTA-TTCCTTGTTTCGAGAAGAAACTATGTCAAT 1951
||||||||| ||| ||||||||||||| ||||||||||| ||||||||| |||| | |
Sbjct 1957 TCCAAAGAAACCAACTGCTCTGTTTTTTTGTTCCTTGTTTCAAGAAGAAACCATGTGA-T 2015
Query 1952 ACTCA-CTCAAAATACAATA----CAGAAAGGACAGAACCTTTGTGTTC 1995
||||| ||||||| |||||| |||||| ||||||||||||||||||
Sbjct 2016 ACTCAACTCAAAAGACAATATATACAGAAATGACAGAACCTTTGTGTTC 2064
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 98844873105
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5