BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480917
Length=1790
Score E
Sequences producing significant alignments: (Bits) Value
AT2G20800.1 | Symbols: NDB4 | NAD(P)H dehydrogenase B4 | chr2:8... 2841 0.0
AT4G05020.2 | Symbols: NDB2 | NAD(P)H dehydrogenase B2 | chr4:2... 141 2e-32
> AT2G20800.1 | Symbols: NDB4 | NAD(P)H dehydrogenase B4 | chr2:8953252-8955761
REVERSE LENGTH=1811
Length=1811
Score = 2841 bits (1538), Expect = 0.0
Identities = 1713/1796 (95%), Gaps = 18/1796 (1%)
Strand=Plus/Plus
Query 1 TTTCTTTTGGATCTGAGGTTTGAGAAATTTGCCGAATCATCATCATGAGCTTCCATAGCT 60
||||||||||||||||||||||||||| | | |||| | |||||| ||||||||||
Sbjct 28 TTTCTTTTGGATCTGAGGTTTGAGAAA--T--C--ATCA--A-CATGAGTTTCCATAGCT 78
Query 61 TTTACCAGAGAGCTTTTAGCTTGTTCAAGGCTTACCCTTCTGCTTCCAAGCTTCTTGTTT 120
||||||||||||||| |||||| |||||||||||||||||| |||||||| ||||| ||
Sbjct 79 TTTACCAGAGAGCTTCTAGCTTATTCAAGGCTTACCCTTCTACTTCCAAGATTCTTCTTC 138
Query 121 TCAGCTCTTTCA---GTGGTGGTGGTGTACTGGTGTATTCAGACTCGAATCCATTGAAAC 177
||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 139 TCAGCACTTTCAGTGGTGGTGGTGGTGTACTGGTGTATTCAGACTCGAATCCATTGAAAC 198
Query 178 GTATATTACACGCAGACGCTACTCTTGACTCAGATGGTCAA-CCAATAAGGAAGAAGAAG 236
||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct 199 GTATATTACACGCAGACGCTACTCTTGACTCAGATGG-CAACCCAATAAGGAAGAAGAAG 257
Query 237 GTGGTCGTTCTTGGCAGTGGGTGGAGTGGCTACAGCTTCTTGAATTACTTGAACAACCCT 296
|||||||||||||||||||| ||||| |||||||||||||||| ||||||||||||||||
Sbjct 258 GTGGTCGTTCTTGGCAGTGGATGGAGCGGCTACAGCTTCTTGAGTTACTTGAACAACCCT 317
Query 297 AACTATGATGTTCAAGTTGTCTCTCCTCGTAACTTTTTCCTATTCACTCCTCTCTTGCCA 356
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 318 AACTATGATGTTCAAGTTGTCTCTCCTCGTAACTTTTTCCTCTTCACTCCTCTCTTGCCA 377
Query 357 AGTGTTACCAATGGTACTGTCGAAGCCCGTAGCATTGTTGAACCCATTCGTGGTCTTATG 416
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 378 AGTGTCACCAATGGTACTGTCGAAGCCCGTAGCATTGTTGAACCCATTCGTGGTCTTATG 437
Query 417 CGCAAGAAAGGATTTGAGTACAAAGAAGCAGAGTGTGTGAAGATTGATCCATCGAACAAG 476
|||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct 438 CGCAAGAAAGGATTTGAGTACAAAGAAGCAGAGTGTGTCAAGATTGATGCATCGAACAAG 497
Query 477 AAACTCCACTGCCGGTCCAAGGAAGGGTCAAGTCTTAAGGGCACAACAGAGTTTGACATG 536
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 498 AAAATCCACTGCCGGTCCAAGGAAGGGTCAAGTCTTAAGGGCACAACAGAGTTTGACATG 557
Query 537 GATTATGACATTCT-AGTCATAGCTGTTGGAGCTAAGCCTAACACATTCAACACCCCTGG 595
|||||||||||||| | || |||||||||| |||||||||||||||||||||||||||||
Sbjct 558 GATTATGACATTCTCA-TCTTAGCTGTTGGTGCTAAGCCTAACACATTCAACACCCCTGG 616
Query 596 AGTTGAGGAACATGCCTATTTCCTTAAAGAAGCAGAGGATGCTCTAAACATCCGTCATTC 655
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 617 AGTTGAGGAACATGCCTATTTCCTCAAAGAAGCAGAGGATGCTCTAAACATTCGTCATTC 676
Query 656 GGTCATCGACTGTTTCGAGAGAGCCTCTCTTCCTAATCTAACTGAAGAAGAGAGGAAAAA 715
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 677 AGTCATCGACTGTTTCGAGAGAGCCTCTCTTCCGAATCTAACTGAAGAAGAGAGGAAAAA 736
Query 716 GATTCTGCATTTCGTTGTGGTTGGTGGAGGACCAACTGGGGTTGAGTTCTCAGCAGAGCT 775
||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||
Sbjct 737 GATTCTGCATTTCGTTGTGGTTGGTGGAGGACCAACTGGAGTCGAGTTCTCTGCAGAGCT 796
Query 776 TCATGATTTCTTAGTCCAGGATGTGGCTAAGATATACCCAAAGGTCCAAGAGTTCACAAG 835
|||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 797 TCATGATTTCCTAGTCCAGGATGTGGCTAAGATTTACCCAAAGGTCCAAGAGTTCACAAA 856
Query 836 AATCACTCTTCTCGAAGCAGGCGACCACATCCTCAACATGTTTGACAAGAGAATCACTGC 895
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 857 AATCACTCTTCTTGAAGCAGGCGACCACATTCTCAACATGTTTGACAAGAGAATCACTGC 916
Query 896 TTTTGCTGAGGAAAAGTTCCAGAGAGACGGTATAGATCTGAAGACAGGTTCAATGGTTGT 955
|||||||||||||||||||||| |||| ||||| ||||||||||||||||||||||||||
Sbjct 917 TTTTGCTGAGGAAAAGTTCCAGCGAGATGGTATTGATCTGAAGACAGGTTCAATGGTTGT 976
Query 956 GGGAGTGACTGCTGATGAGATATCCACAAAGGAAAGAGAAACTGGCAAAATTGTCTCTGA 1015
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 977 GGGAGTGACTGCTGATGAGATATCCACAAAGGAAAGAGAAACTGGCAAGATTGTCTCCGA 1036
Query 1016 ACCTTATGGTATGGTTGTGTGGTCAACAGGAATTGGTTCACGTCCTGTCATCAGAGACTT 1075
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1037 ACCTTATGGTATGGTTGTGTGGTCAACAGGAATTGGTTCACGTCCTGTCATCAAAGACTT 1096
Query 1076 TATGCAGCAGATTGGTCAGGGGCAGAGGCGTGTCTTAGCTACTGACGAATGGCTTAGAGT 1135
||||||||||||||||||||| ||||| |||||||| ||||| |||||||||||||||||
Sbjct 1097 TATGCAGCAGATTGGTCAGGGACAGAGACGTGTCTTGGCTACCGACGAATGGCTTAGAGT 1156
Query 1136 GGAGGGATGTGA-GGATGTCTATGCTTTAGGTGACACTGCAACGATCAACCAACGCAGAG 1194
||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1157 AGAGGGATGTGACGG-TGTCTATGCTTTAGGTGACACTGCAACGATCAACCAACGCAGAG 1215
Query 1195 TCATGGAAGATATAGCTGCGATTTTTAGCAAAGCCGACAAGGGAAACACAGGAACTTTAA 1254
||||||||||||||||||||||||| | |||||| ||||||||||||||||||||||| |
Sbjct 1216 TCATGGAAGATATAGCTGCGATTTTCAACAAAGCAGACAAGGGAAACACAGGAACTTTGA 1275
Query 1255 ACAAGAAAGATTTCAATGGTGTGGTTAAAGACATTTGCCAGAGGTACCCTCAGGTGGAGC 1314
| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1276 AGAAGAAAGATTTCAATAGTGTGGTTAAAGACATTTGCCAGAGGTACCCTCAGGTGGAGC 1335
Query 1315 TCTACTTAAAGAAGAATAAACTGAAGAACATTGCACATTTGCTCAAGAGTGCAAATGGTG 1374
||||||| ||||||||||| ||||||||||||||| | ||||||||||||||||||||||
Sbjct 1336 TCTACTTGAAGAAGAATAAGCTGAAGAACATTGCAAACTTGCTCAAGAGTGCAAATGGTG 1395
Query 1375 AGGACACACAAGTAAACATCGAGAATTTTAAGCAAGCTCTCTCTGAGGTTGATTCACAGA 1434
||||||||||||| || ||||| || ||||||||||||||||||||||||||||||||||
Sbjct 1396 AGGACACACAAGTGAATATCGAAAAGTTTAAGCAAGCTCTCTCTGAGGTTGATTCACAGA 1455
Query 1435 TGAAGAACCTTCCAGCAACTGCACAGGTTGCATCACAACAAGGGAAGTACCTCGCAAAGT 1494
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1456 TGAAGAACCTTCCAGCAACTGCACAGGTTGCATCACAACAAGGGAAGTACCTTGCAAAGT 1515
Query 1495 GCTTCAACAAAATGGAGAAATGTGAGAGGAAGCCAGAGGGACCATTGAGGTTTAGAGGAG 1554
||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct 1516 GCTTCAACAAAATGGAGAAATGTGAGAAGAAGCCAGAGGGACCATTGAGGTTCAGAGGAG 1575
Query 1555 AGGGTCGACATCGGTTCCAACCATTCAGATACAGACATTTTGGATCGTTTGCTCCGCTGG 1614
||||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||
Sbjct 1576 AGGGTCGACATCGGTTCCAGCCATTCAGGTACAGACATTTTGGATCGTTTGCTCCACTGG 1635
Query 1615 GAGGGGAACAGACAGCAGCAGAACTGCCAGGGGATTGGGTCTCCATTGGACACAGCAGCC 1674
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 1636 GAGGGGAACAGACAGCAGCTGAACTGCCAGGAGATTGGGTCTCCATTGGACACAGCAGCC 1695
Query 1675 AGTGGCTCTGGTACTCTGTCTACGCCAGCAAACTGGTAAGCTGGCGCACAAGGATGCTCG 1734
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1696 AGTGGCTTTGGTACTCTGTCTACGCCAGCAAACTGGTGAGCTGGCGCACAAGGATGCTCG 1755
Query 1735 TCATCTCTGATTGGACTCGACGCTTTGTCTTTGGCCGTGACTCTAGCAGCATCTAA 1790
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1756 TCATCTCTGATTGGACTCGACGCTTTGTCTTTGGCCGTGACTCTAGCAGCATCTAA 1811
> AT4G05020.2 | Symbols: NDB2 | NAD(P)H dehydrogenase B2 | chr4:2572621-2576595
FORWARD LENGTH=2364
Length=2364
Score = 141 bits (76), Expect = 2e-32
Identities = 153/190 (81%), Gaps = 6/190 (3%)
Strand=Plus/Plus
Query 1602 TTTGCTCCGCTGGGAGGGGAACAGACAGCAGCAGAACTGCCAGGGGATTGGGTCTCCATT 1661
||||| || ||||||||||| || || |||||| |||| ||||| |||||||| || |||
Sbjct 1803 TTTGCACCACTGGGAGGGGAGCAAACGGCAGCACAACTTCCAGGAGATTGGGTTTCTATT 1862
Query 1662 GGACACAGCAGCCAGTGGCTCTGGTACTCTGTCTACGCCAGCAAACTGGTAAGCTGGCGC 1721
||||||||||||||||||||||||||||| ||||||||||| || | || ||||||||
Sbjct 1863 GGACACAGCAGCCAGTGGCTCTGGTACTCCGTCTACGCCAGTAAGCAAGTGAGCTGGCGT 1922
Query 1722 ACAAG-GATGCTCGTCATCTCTGATTGGACTCGACGC-TTTG-TCTTTGGCCGTGACTCT 1778
|| || | |||| || | || ||||||| | || || ||| ||||||| | || ||
Sbjct 1923 ACGAGAG-TGCTTGTGGTTTCAGATTGGA-T-GAGGCGTTTCATCTTTGGTAGAGATTCC 1979
Query 1779 AGCAGCATCT 1788
|| |||||||
Sbjct 1980 AGTAGCATCT 1989
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88553761380
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5